EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000013216 (Gene tree)
Gene ID: -
Gene Symbol: snrpf
Alias: snrpfl
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 1799 bases
Position: chrCCOE01000931.1:185799-187597
Accession: ZDB-GENE-040930-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000017055	LSM	PF01423.22	6.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000017521	-	258	-	ENSACIP00000017055	85 (aa)	-	-

Gene Model

Click here to download ENSACIG00000013216's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000013216's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000013216	snrpf	78	50.000	ENSACIG00000016711	lsm6	83	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000013216	snrpf	99	97.619	ENSG00000139343	SNRPF	98	97.619	Homo_sapiens
ENSACIG00000013216	snrpf	99	100.000	ENSAPOG00000003377	snrpf	66	100.000	Acanthochromis_polyacanthus
ENSACIG00000013216	snrpf	87	83.784	ENSAMEG00000018718	-	85	84.932	Ailuropoda_melanoleuca
ENSACIG00000013216	snrpf	99	97.619	ENSAMEG00000002166	-	99	97.619	Ailuropoda_melanoleuca
ENSACIG00000013216	snrpf	100	100.000	ENSAOCG00000015108	snrpf	100	100.000	Amphiprion_ocellaris
ENSACIG00000013216	snrpf	100	100.000	ENSAPEG00000022022	snrpf	100	100.000	Amphiprion_percula
ENSACIG00000013216	snrpf	99	100.000	ENSATEG00000022625	snrpf	90	100.000	Anabas_testudineus
ENSACIG00000013216	snrpf	99	96.429	ENSACAG00000014073	SNRPF	97	96.429	Anolis_carolinensis
ENSACIG00000013216	snrpf	99	97.619	ENSANAG00000032845	SNRPF	98	97.619	Aotus_nancymaae
ENSACIG00000013216	snrpf	84	88.732	ENSANAG00000020297	-	65	88.732	Aotus_nancymaae
ENSACIG00000013216	snrpf	86	67.123	ENSANAG00000025860	-	82	67.123	Aotus_nancymaae
ENSACIG00000013216	snrpf	100	100.000	ENSACLG00000016066	snrpf	100	100.000	Astatotilapia_calliptera
ENSACIG00000013216	snrpf	86	97.260	ENSAMXG00000007421	snrpf	85	97.260	Astyanax_mexicanus
ENSACIG00000013216	snrpf	89	90.789	ENSBTAG00000050012	-	90	90.411	Bos_taurus
ENSACIG00000013216	snrpf	99	97.619	ENSBTAG00000016271	SNRPF	98	97.619	Bos_taurus
ENSACIG00000013216	snrpf	93	69.620	WBGene00004918	snr-5	87	71.622	Caenorhabditis_elegans
ENSACIG00000013216	snrpf	99	97.619	ENSCJAG00000002705	-	98	97.619	Callithrix_jacchus
ENSACIG00000013216	snrpf	99	97.619	ENSCAFG00000006395	-	76	97.619	Canis_familiaris
ENSACIG00000013216	snrpf	85	90.278	ENSCAFG00000031151	-	86	90.541	Canis_familiaris
ENSACIG00000013216	snrpf	92	85.897	ENSCAFG00020013161	-	74	94.286	Canis_lupus_dingo
ENSACIG00000013216	snrpf	85	90.278	ENSCAFG00020010823	-	86	90.541	Canis_lupus_dingo
ENSACIG00000013216	snrpf	86	91.892	ENSTSYG00000036502	-	85	91.892	Carlito_syrichta
ENSACIG00000013216	snrpf	86	83.562	ENSTSYG00000030635	-	84	83.562	Carlito_syrichta
ENSACIG00000013216	snrpf	96	90.244	ENSTSYG00000031636	-	62	91.892	Carlito_syrichta
ENSACIG00000013216	snrpf	99	97.619	ENSCAPG00000007242	SNRPF	99	97.619	Cavia_aperea
ENSACIG00000013216	snrpf	99	97.619	ENSCPOG00000013898	SNRPF	98	97.619	Cavia_porcellus
ENSACIG00000013216	snrpf	99	88.095	ENSCCAG00000033627	-	57	89.041	Cebus_capucinus
ENSACIG00000013216	snrpf	99	97.619	ENSCCAG00000037378	-	98	97.619	Cebus_capucinus
ENSACIG00000013216	snrpf	99	96.429	ENSCCAG00000017356	-	98	96.429	Cebus_capucinus
ENSACIG00000013216	snrpf	99	97.619	ENSCLAG00000007200	SNRPF	98	97.619	Chinchilla_lanigera
ENSACIG00000013216	snrpf	99	97.619	ENSCSAG00000003602	-	68	97.619	Chlorocebus_sabaeus
ENSACIG00000013216	snrpf	73	96.774	ENSCHOG00000009392	SNRPF	97	96.774	Choloepus_hoffmanni
ENSACIG00000013216	snrpf	99	85.714	ENSCPBG00000001985	-	87	87.671	Chrysemys_picta_bellii
ENSACIG00000013216	snrpf	86	89.041	ENSCPBG00000006227	-	85	89.041	Chrysemys_picta_bellii
ENSACIG00000013216	snrpf	99	91.667	ENSCPBG00000024287	-	59	93.151	Chrysemys_picta_bellii
ENSACIG00000013216	snrpf	99	86.905	ENSCPBG00000026463	-	85	87.671	Chrysemys_picta_bellii
ENSACIG00000013216	snrpf	99	88.095	ENSCSAVG00000007498	-	83	90.411	Ciona_savignyi
ENSACIG00000013216	snrpf	99	97.619	ENSCGRG00001017100	-	98	97.619	Cricetulus_griseus_chok1gshd
ENSACIG00000013216	snrpf	87	90.541	ENSCGRG00001008965	-	57	90.541	Cricetulus_griseus_chok1gshd
ENSACIG00000013216	snrpf	93	91.139	ENSCGRG00000018878	-	92	90.541	Cricetulus_griseus_crigri
ENSACIG00000013216	snrpf	99	97.619	ENSCGRG00000000336	-	98	97.619	Cricetulus_griseus_crigri
ENSACIG00000013216	snrpf	99	98.810	ENSCSEG00000004748	snrpf	98	98.810	Cynoglossus_semilaevis
ENSACIG00000013216	snrpf	99	100.000	ENSCVAG00000000397	snrpf	67	100.000	Cyprinodon_variegatus
ENSACIG00000013216	snrpf	99	97.674	ENSDARG00000105037	snrpf	98	97.674	Danio_rerio
ENSACIG00000013216	snrpf	85	81.944	ENSDNOG00000049373	-	63	81.944	Dasypus_novemcinctus
ENSACIG00000013216	snrpf	99	97.619	ENSDNOG00000043775	-	54	97.619	Dasypus_novemcinctus
ENSACIG00000013216	snrpf	99	96.429	ENSDNOG00000048989	-	75	96.429	Dasypus_novemcinctus
ENSACIG00000013216	snrpf	82	87.143	ENSDORG00000025351	-	97	87.143	Dipodomys_ordii
ENSACIG00000013216	snrpf	69	94.915	ENSDORG00000029740	-	72	94.915	Dipodomys_ordii
ENSACIG00000013216	snrpf	99	77.381	FBgn0000426	SmF	83	80.822	Drosophila_melanogaster
ENSACIG00000013216	snrpf	99	97.619	ENSETEG00000001558	-	98	97.619	Echinops_telfairi
ENSACIG00000013216	snrpf	96	75.610	ENSEBUG00000001793	-	72	86.567	Eptatretus_burgeri
ENSACIG00000013216	snrpf	99	97.619	ENSECAG00000019817	SNRPF	68	97.619	Equus_caballus
ENSACIG00000013216	snrpf	99	97.619	ENSEEUG00000013509	SNRPF	99	97.619	Erinaceus_europaeus
ENSACIG00000013216	snrpf	99	94.048	ENSELUG00000007737	RUXF	84	95.890	Esox_lucius
ENSACIG00000013216	snrpf	99	97.619	ENSELUG00000003121	RUXF	98	97.619	Esox_lucius
ENSACIG00000013216	snrpf	96	75.610	ENSFCAG00000031148	-	70	73.684	Felis_catus
ENSACIG00000013216	snrpf	86	72.603	ENSFCAG00000021942	-	84	72.603	Felis_catus
ENSACIG00000013216	snrpf	99	97.619	ENSFCAG00000029966	-	98	97.619	Felis_catus
ENSACIG00000013216	snrpf	99	97.619	ENSFALG00000010799	SNRPF	98	97.619	Ficedula_albicollis
ENSACIG00000013216	snrpf	99	97.619	ENSFDAG00000002831	-	98	97.619	Fukomys_damarensis
ENSACIG00000013216	snrpf	99	100.000	ENSFHEG00000003240	snrpf	74	100.000	Fundulus_heteroclitus
ENSACIG00000013216	snrpf	99	100.000	ENSGMOG00000007741	snrpf	99	100.000	Gadus_morhua
ENSACIG00000013216	snrpf	99	97.619	ENSGALG00000011409	SNRPF	98	97.619	Gallus_gallus
ENSACIG00000013216	snrpf	100	98.824	ENSGAFG00000016187	snrpf	98	98.824	Gambusia_affinis
ENSACIG00000013216	snrpf	99	98.810	ENSGACG00000020055	snrpf	99	98.810	Gasterosteus_aculeatus
ENSACIG00000013216	snrpf	87	90.541	ENSGAGG00000012945	-	67	91.781	Gopherus_agassizii
ENSACIG00000013216	snrpf	93	88.608	ENSGAGG00000022991	-	80	91.176	Gopherus_agassizii
ENSACIG00000013216	snrpf	71	88.333	ENSGAGG00000011163	-	86	91.837	Gopherus_agassizii
ENSACIG00000013216	snrpf	79	83.582	ENSGAGG00000014132	-	81	83.582	Gopherus_agassizii
ENSACIG00000013216	snrpf	71	93.333	ENSGAGG00000020974	-	52	90.323	Gopherus_agassizii
ENSACIG00000013216	snrpf	96	78.049	ENSGGOG00000039936	-	81	75.342	Gorilla_gorilla
ENSACIG00000013216	snrpf	91	74.026	ENSGGOG00000039564	-	88	72.603	Gorilla_gorilla
ENSACIG00000013216	snrpf	100	97.647	ENSGGOG00000001127	-	100	97.647	Gorilla_gorilla
ENSACIG00000013216	snrpf	99	97.619	ENSHGLG00000009108	SNRPF	98	97.619	Heterocephalus_glaber_female
ENSACIG00000013216	snrpf	99	96.429	ENSHGLG00000021172	-	98	96.429	Heterocephalus_glaber_female
ENSACIG00000013216	snrpf	99	97.619	ENSHGLG00100008103	-	99	97.619	Heterocephalus_glaber_male
ENSACIG00000013216	snrpf	99	96.429	ENSHGLG00100019596	-	98	96.429	Heterocephalus_glaber_male
ENSACIG00000013216	snrpf	75	87.324	ENSHCOG00000018663	snrpf	55	87.324	Hippocampus_comes
ENSACIG00000013216	snrpf	100	100.000	ENSIPUG00000018994	snrpf	100	100.000	Ictalurus_punctatus
ENSACIG00000013216	snrpf	99	97.619	ENSSTOG00000010434	-	98	97.619	Ictidomys_tridecemlineatus
ENSACIG00000013216	snrpf	99	78.571	ENSJJAG00000004558	-	87	79.452	Jaculus_jaculus
ENSACIG00000013216	snrpf	79	91.045	ENSJJAG00000004828	-	86	92.857	Jaculus_jaculus
ENSACIG00000013216	snrpf	99	97.619	ENSJJAG00000011272	-	98	97.619	Jaculus_jaculus
ENSACIG00000013216	snrpf	99	82.143	ENSJJAG00000010502	-	87	83.562	Jaculus_jaculus
ENSACIG00000013216	snrpf	100	100.000	ENSKMAG00000013566	snrpf	99	100.000	Kryptolebias_marmoratus
ENSACIG00000013216	snrpf	99	98.810	ENSLBEG00000008800	snrpf	98	98.810	Labrus_bergylta
ENSACIG00000013216	snrpf	99	97.619	ENSLACG00000002456	-	72	97.619	Latimeria_chalumnae
ENSACIG00000013216	snrpf	99	97.619	ENSLOCG00000015744	snrpf	98	97.619	Lepisosteus_oculatus
ENSACIG00000013216	snrpf	99	97.619	ENSLAFG00000017426	SNRPF	98	97.619	Loxodonta_africana
ENSACIG00000013216	snrpf	100	98.824	ENSMAMG00000016593	snrpf	100	98.824	Mastacembelus_armatus
ENSACIG00000013216	snrpf	100	100.000	ENSMZEG00005014701	snrpf	100	100.000	Maylandia_zebra
ENSACIG00000013216	snrpf	99	97.619	ENSMGAG00000011453	-	76	97.619	Meleagris_gallopavo
ENSACIG00000013216	snrpf	86	93.151	ENSMAUG00000008799	-	85	93.151	Mesocricetus_auratus
ENSACIG00000013216	snrpf	87	97.297	ENSMAUG00000016909	-	100	97.297	Mesocricetus_auratus
ENSACIG00000013216	snrpf	87	97.297	ENSMAUG00000019737	-	100	97.297	Mesocricetus_auratus
ENSACIG00000013216	snrpf	72	90.164	ENSMAUG00000010289	-	66	94.000	Mesocricetus_auratus
ENSACIG00000013216	snrpf	86	90.411	ENSMICG00000030494	-	58	90.411	Microcebus_murinus
ENSACIG00000013216	snrpf	99	97.619	ENSMICG00000012153	-	98	97.619	Microcebus_murinus
ENSACIG00000013216	snrpf	99	97.619	ENSMOCG00000020437	Snrpf	98	97.619	Microtus_ochrogaster
ENSACIG00000013216	snrpf	86	84.932	ENSMOCG00000022166	-	80	84.932	Microtus_ochrogaster
ENSACIG00000013216	snrpf	80	80.882	ENSMOCG00000020220	-	87	80.882	Microtus_ochrogaster
ENSACIG00000013216	snrpf	99	98.810	ENSMMOG00000007127	snrpf	99	98.810	Mola_mola
ENSACIG00000013216	snrpf	99	97.619	ENSMODG00000008091	SNRPF	74	97.619	Monodelphis_domestica
ENSACIG00000013216	snrpf	100	100.000	ENSMALG00000012328	snrpf	100	100.000	Monopterus_albus
ENSACIG00000013216	snrpf	99	97.619	MGP_CAROLIEiJ_G0015735	-	98	97.619	Mus_caroli
ENSACIG00000013216	snrpf	99	97.619	ENSMUSG00000020018	Snrpf	98	97.619	Mus_musculus
ENSACIG00000013216	snrpf	99	97.619	MGP_PahariEiJ_G0031350	Snrpf	98	97.619	Mus_pahari
ENSACIG00000013216	snrpf	99	97.619	MGP_SPRETEiJ_G0016553	Snrpf	98	97.619	Mus_spretus
ENSACIG00000013216	snrpf	99	97.619	ENSMPUG00000007176	-	75	97.619	Mustela_putorius_furo
ENSACIG00000013216	snrpf	99	97.619	ENSMLUG00000029201	-	79	97.619	Myotis_lucifugus
ENSACIG00000013216	snrpf	99	97.619	ENSMLUG00000013577	-	99	97.619	Myotis_lucifugus
ENSACIG00000013216	snrpf	99	97.619	ENSMLUG00000026149	-	79	97.619	Myotis_lucifugus
ENSACIG00000013216	snrpf	99	97.619	ENSMLUG00000027932	-	79	97.619	Myotis_lucifugus
ENSACIG00000013216	snrpf	99	78.571	ENSMLUG00000026269	-	69	76.712	Myotis_lucifugus
ENSACIG00000013216	snrpf	99	97.619	ENSNGAG00000024292	-	98	97.619	Nannospalax_galili
ENSACIG00000013216	snrpf	74	90.476	ENSNGAG00000005851	-	71	90.000	Nannospalax_galili
ENSACIG00000013216	snrpf	99	100.000	ENSNBRG00000011682	snrpf	86	100.000	Neolamprologus_brichardi
ENSACIG00000013216	snrpf	86	69.863	ENSMEUG00000000671	SNRPF	86	69.863	Notamacropus_eugenii
ENSACIG00000013216	snrpf	100	97.647	ENSODEG00000010328	-	100	97.647	Octodon_degus
ENSACIG00000013216	snrpf	99	97.619	ENSOCUG00000010925	SNRPF	74	97.619	Oryctolagus_cuniculus
ENSACIG00000013216	snrpf	86	97.260	ENSORLG00020008216	snrpf	86	97.260	Oryzias_latipes_hni
ENSACIG00000013216	snrpf	86	97.260	ENSORLG00015007418	snrpf	86	97.260	Oryzias_latipes_hsok
ENSACIG00000013216	snrpf	100	98.824	ENSOMEG00000003018	snrpf	100	98.824	Oryzias_melastigma
ENSACIG00000013216	snrpf	86	95.890	ENSOGAG00000030323	-	85	95.890	Otolemur_garnettii
ENSACIG00000013216	snrpf	99	97.619	ENSOARG00000011853	-	73	97.619	Ovis_aries
ENSACIG00000013216	snrpf	96	78.049	ENSPPAG00000037544	-	81	75.342	Pan_paniscus
ENSACIG00000013216	snrpf	91	74.026	ENSPPAG00000037479	-	88	72.603	Pan_paniscus
ENSACIG00000013216	snrpf	96	74.390	ENSPPRG00000007449	-	74	73.973	Panthera_pardus
ENSACIG00000013216	snrpf	99	97.619	ENSPPRG00000005875	-	98	97.619	Panthera_pardus
ENSACIG00000013216	snrpf	99	97.619	ENSPTIG00000007520	SNRPF	98	97.619	Panthera_tigris_altaica
ENSACIG00000013216	snrpf	96	76.829	ENSPTIG00000005117	-	87	73.973	Panthera_tigris_altaica
ENSACIG00000013216	snrpf	91	74.026	ENSPTRG00000047717	-	88	72.603	Pan_troglodytes
ENSACIG00000013216	snrpf	96	78.049	ENSPTRG00000043814	-	81	75.342	Pan_troglodytes
ENSACIG00000013216	snrpf	99	100.000	ENSPKIG00000014784	snrpf	92	100.000	Paramormyrops_kingsleyae
ENSACIG00000013216	snrpf	99	97.619	ENSPSIG00000016462	SNRPF	98	97.619	Pelodiscus_sinensis
ENSACIG00000013216	snrpf	99	98.810	ENSPMGG00000023548	snrpf	99	98.810	Periophthalmus_magnuspinnatus
ENSACIG00000013216	snrpf	99	97.619	ENSPEMG00000023326	Snrpf	98	97.619	Peromyscus_maniculatus_bairdii
ENSACIG00000013216	snrpf	100	100.000	ENSPLAG00000023932	snrpf	100	100.000	Poecilia_latipinna
ENSACIG00000013216	snrpf	100	100.000	ENSPMEG00000003377	snrpf	100	100.000	Poecilia_mexicana
ENSACIG00000013216	snrpf	100	98.824	ENSPREG00000022635	snrpf	98	98.824	Poecilia_reticulata
ENSACIG00000013216	snrpf	99	97.619	ENSPPYG00000004847	-	98	97.619	Pongo_abelii
ENSACIG00000013216	snrpf	99	97.619	ENSPCOG00000023833	-	98	97.619	Propithecus_coquereli
ENSACIG00000013216	snrpf	99	97.619	ENSPVAG00000009036	SNRPF	98	97.619	Pteropus_vampyrus
ENSACIG00000013216	snrpf	100	100.000	ENSPNYG00000021712	snrpf	100	100.000	Pundamilia_nyererei
ENSACIG00000013216	snrpf	100	98.824	ENSPNAG00000019117	snrpf	100	98.824	Pygocentrus_nattereri
ENSACIG00000013216	snrpf	99	97.619	ENSRNOG00000005556	Snrpf	98	97.619	Rattus_norvegicus
ENSACIG00000013216	snrpf	86	94.521	ENSRBIG00000030414	-	85	94.521	Rhinopithecus_bieti
ENSACIG00000013216	snrpf	86	94.521	ENSRROG00000021975	-	85	94.521	Rhinopithecus_roxellana
ENSACIG00000013216	snrpf	82	60.563	YPR182W	SMX3	83	60.563	Saccharomyces_cerevisiae
ENSACIG00000013216	snrpf	99	97.619	ENSSBOG00000036179	-	98	97.619	Saimiri_boliviensis_boliviensis
ENSACIG00000013216	snrpf	86	82.192	ENSSBOG00000032297	-	83	82.192	Saimiri_boliviensis_boliviensis
ENSACIG00000013216	snrpf	89	77.215	ENSSBOG00000027638	-	89	77.215	Saimiri_boliviensis_boliviensis
ENSACIG00000013216	snrpf	99	96.429	ENSSBOG00000012868	-	98	96.429	Saimiri_boliviensis_boliviensis
ENSACIG00000013216	snrpf	99	97.619	ENSSHAG00000012294	SNRPF	76	97.619	Sarcophilus_harrisii
ENSACIG00000013216	snrpf	74	100.000	ENSSFOG00015021523	snrpf	94	100.000	Scleropages_formosus
ENSACIG00000013216	snrpf	99	98.810	ENSSMAG00000005533	snrpf	97	98.810	Scophthalmus_maximus
ENSACIG00000013216	snrpf	74	100.000	ENSSDUG00000016283	snrpf	75	100.000	Seriola_dumerili
ENSACIG00000013216	snrpf	99	100.000	ENSSLDG00000005119	snrpf	98	100.000	Seriola_lalandi_dorsalis
ENSACIG00000013216	snrpf	93	72.152	ENSSLDG00000003885	-	89	75.342	Seriola_lalandi_dorsalis
ENSACIG00000013216	snrpf	100	97.647	ENSSPUG00000014590	-	100	97.647	Sphenodon_punctatus
ENSACIG00000013216	snrpf	99	100.000	ENSSPAG00000003283	snrpf	95	100.000	Stegastes_partitus
ENSACIG00000013216	snrpf	99	97.619	ENSSSCG00000000895	SNRPF	98	97.619	Sus_scrofa
ENSACIG00000013216	snrpf	81	98.551	ENSTRUG00000014956	snrpf	100	98.551	Takifugu_rubripes
ENSACIG00000013216	snrpf	99	98.810	ENSTNIG00000012672	snrpf	98	98.810	Tetraodon_nigroviridis
ENSACIG00000013216	snrpf	86	69.863	ENSTTRG00000006070	SNRPF	85	69.863	Tursiops_truncatus
ENSACIG00000013216	snrpf	99	84.524	ENSUAMG00000001101	-	86	86.301	Ursus_americanus
ENSACIG00000013216	snrpf	99	97.619	ENSUAMG00000008176	-	98	97.619	Ursus_americanus
ENSACIG00000013216	snrpf	86	86.301	ENSUMAG00000006177	-	86	86.301	Ursus_maritimus
ENSACIG00000013216	snrpf	99	97.619	ENSUMAG00000003528	-	98	97.619	Ursus_maritimus
ENSACIG00000013216	snrpf	99	97.619	ENSVPAG00000008712	-	98	97.619	Vicugna_pacos
ENSACIG00000013216	snrpf	89	89.474	ENSVVUG00000023821	-	94	89.041	Vulpes_vulpes
ENSACIG00000013216	snrpf	86	74.667	ENSXETG00000021630	snrpf	86	72.000	Xenopus_tropicalis
ENSACIG00000013216	snrpf	100	98.824	ENSXCOG00000013860	snrpf	98	98.824	Xiphophorus_couchianus
ENSACIG00000013216	snrpf	100	100.000	ENSXMAG00000015448	snrpf	100	100.000	Xiphophorus_maculatus