EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000013234 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 4559 bases
Position: chrCCOE01000517.1:267850-272408
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000016982	RRM_1	PF00076.22	1.2e-56	1	4
ENSACIP00000016982	RRM_1	PF00076.22	1.2e-56	2	4
ENSACIP00000016982	RRM_1	PF00076.22	1.2e-56	3	4
ENSACIP00000016982	RRM_1	PF00076.22	1.2e-56	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000017439	-	1776	-	ENSACIP00000016982	591 (aa)	-	-

Gene Model

Click here to download ENSACIG00000013234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000013234's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000013234	ncl	57	34.722	ENSACIG00000021004	-	67	35.417
ENSACIG00000013234	ncl	64	35.065	ENSACIG00000021941	-	86	36.702

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000013234	ncl	62	81.600	ENSAPOG00000023888	ncl	68	81.818	Acanthochromis_polyacanthus
ENSACIG00000013234	ncl	66	42.029	ENSAPOG00000014534	-	67	42.188	Acanthochromis_polyacanthus
ENSACIG00000013234	ncl	66	41.346	ENSAOCG00000014792	-	61	42.159	Amphiprion_ocellaris
ENSACIG00000013234	ncl	65	73.412	ENSAOCG00000003133	ncl	56	30.641	Amphiprion_ocellaris
ENSACIG00000013234	ncl	66	41.587	ENSAPEG00000013612	-	60	42.416	Amphiprion_percula
ENSACIG00000013234	ncl	62	81.867	ENSAPEG00000002769	ncl	69	82.086	Amphiprion_percula
ENSACIG00000013234	ncl	71	43.848	ENSATEG00000019862	-	81	44.221	Anabas_testudineus
ENSACIG00000013234	ncl	62	80.533	ENSATEG00000013343	ncl	54	80.533	Anabas_testudineus
ENSACIG00000013234	ncl	85	54.791	ENSAPLG00000012897	-	64	56.848	Anas_platyrhynchos
ENSACIG00000013234	ncl	62	62.467	ENSACAG00000001006	-	52	62.368	Anolis_carolinensis
ENSACIG00000013234	ncl	51	89.037	ENSACLG00000026031	ncl	82	89.037	Astatotilapia_calliptera
ENSACIG00000013234	ncl	62	68.267	ENSAMXG00000001647	ncl	81	68.771	Astyanax_mexicanus
ENSACIG00000013234	ncl	57	42.939	ENSCHIG00000012665	-	54	42.597	Capra_hircus
ENSACIG00000013234	ncl	75	50.917	ENSCHIG00000003401	-	51	50.679	Capra_hircus
ENSACIG00000013234	ncl	62	61.376	ENSCPBG00000016444	-	56	61.436	Chrysemys_picta_bellii
ENSACIG00000013234	ncl	62	76.517	ENSCSEG00000015089	ncl	76	76.316	Cynoglossus_semilaevis
ENSACIG00000013234	ncl	62	76.613	ENSCVAG00000012600	ncl	55	76.064	Cyprinodon_variegatus
ENSACIG00000013234	ncl	62	73.867	ENSDARG00000002710	ncl	86	72.590	Danio_rerio
ENSACIG00000013234	ncl	60	47.500	ENSDNOG00000040257	-	61	47.514	Dasypus_novemcinctus
ENSACIG00000013234	ncl	66	43.434	ENSDNOG00000031611	-	66	45.257	Dasypus_novemcinctus
ENSACIG00000013234	ncl	69	48.095	ENSELUG00000022826	-	82	49.608	Esox_lucius
ENSACIG00000013234	ncl	62	70.106	ENSELUG00000006033	ncl	57	70.263	Esox_lucius
ENSACIG00000013234	ncl	62	57.368	ENSFALG00000007592	-	54	57.368	Ficedula_albicollis
ENSACIG00000013234	ncl	62	75.733	ENSFHEG00000018000	ncl	85	65.462	Fundulus_heteroclitus
ENSACIG00000013234	ncl	63	67.467	ENSGMOG00000001341	ncl	59	67.120	Gadus_morhua
ENSACIG00000013234	ncl	62	57.784	ENSGALG00000032930	NCL	55	57.784	Gallus_gallus
ENSACIG00000013234	ncl	62	74.933	ENSGAFG00000015375	ncl	51	74.734	Gambusia_affinis
ENSACIG00000013234	ncl	62	74.734	ENSGACG00000008970	ncl	74	74.734	Gasterosteus_aculeatus
ENSACIG00000013234	ncl	62	61.538	ENSGAGG00000013330	-	56	61.436	Gopherus_agassizii
ENSACIG00000013234	ncl	62	90.515	ENSHBUG00000006869	ncl	70	91.057	Haplochromis_burtoni
ENSACIG00000013234	ncl	68	74.505	ENSHCOG00000010234	ncl	72	67.749	Hippocampus_comes
ENSACIG00000013234	ncl	51	70.297	ENSIPUG00000024556	ncl	78	70.957	Ictalurus_punctatus
ENSACIG00000013234	ncl	62	77.005	ENSKMAG00000008111	ncl	74	76.862	Kryptolebias_marmoratus
ENSACIG00000013234	ncl	62	78.933	ENSLBEG00000019073	ncl	76	78.723	Labrus_bergylta
ENSACIG00000013234	ncl	68	43.230	ENSLBEG00000007915	-	67	43.797	Labrus_bergylta
ENSACIG00000013234	ncl	61	43.272	ENSLBEG00000014278	-	81	43.611	Labrus_bergylta
ENSACIG00000013234	ncl	67	51.225	ENSLACG00000022167	-	79	52.815	Latimeria_chalumnae
ENSACIG00000013234	ncl	65	62.245	ENSLACG00000009328	ncl	72	64.247	Latimeria_chalumnae
ENSACIG00000013234	ncl	60	66.106	ENSLOCG00000004828	ncl	74	65.952	Lepisosteus_oculatus
ENSACIG00000013234	ncl	66	41.463	ENSMAMG00000003479	-	69	40.838	Mastacembelus_armatus
ENSACIG00000013234	ncl	62	90.515	ENSMZEG00005017438	ncl	70	91.057	Maylandia_zebra
ENSACIG00000013234	ncl	60	57.258	ENSMGAG00000008147	-	80	63.717	Meleagris_gallopavo
ENSACIG00000013234	ncl	53	81.013	ENSMMOG00000008553	ncl	85	82.278	Mola_mola
ENSACIG00000013234	ncl	58	78.632	ENSMALG00000014827	ncl	72	78.409	Monopterus_albus
ENSACIG00000013234	ncl	58	45.875	ENSMPUG00000001663	-	59	45.875	Mustela_putorius_furo
ENSACIG00000013234	ncl	61	58.556	ENSMEUG00000012335	-	64	52.135	Notamacropus_eugenii
ENSACIG00000013234	ncl	63	38.462	ENSONIG00000010631	-	97	38.710	Oreochromis_niloticus
ENSACIG00000013234	ncl	62	90.515	ENSONIG00000012508	ncl	70	91.057	Oreochromis_niloticus
ENSACIG00000013234	ncl	70	57.143	ENSOANG00000008732	-	61	59.948	Ornithorhynchus_anatinus
ENSACIG00000013234	ncl	65	38.481	ENSORLG00000004645	-	83	39.474	Oryzias_latipes
ENSACIG00000013234	ncl	60	79.330	ENSORLG00000007055	ncl	72	77.926	Oryzias_latipes
ENSACIG00000013234	ncl	62	77.867	ENSORLG00020017943	ncl	68	77.926	Oryzias_latipes_hni
ENSACIG00000013234	ncl	65	38.481	ENSORLG00020003497	-	74	38.947	Oryzias_latipes_hni
ENSACIG00000013234	ncl	63	75.798	ENSORLG00015013815	ncl	86	79.612	Oryzias_latipes_hsok
ENSACIG00000013234	ncl	65	38.945	ENSORLG00015006613	-	77	39.737	Oryzias_latipes_hsok
ENSACIG00000013234	ncl	65	39.750	ENSOMEG00000015864	-	82	40.263	Oryzias_melastigma
ENSACIG00000013234	ncl	62	77.333	ENSOMEG00000020786	ncl	51	77.128	Oryzias_melastigma
ENSACIG00000013234	ncl	62	74.064	ENSPKIG00000002604	ncl	72	74.194	Paramormyrops_kingsleyae
ENSACIG00000013234	ncl	80	59.413	ENSPSIG00000002361	-	53	60.574	Pelodiscus_sinensis
ENSACIG00000013234	ncl	62	72.654	ENSPMGG00000004709	ncl	86	71.299	Periophthalmus_magnuspinnatus
ENSACIG00000013234	ncl	61	57.218	ENSPCIG00000003293	-	62	50.336	Phascolarctos_cinereus
ENSACIG00000013234	ncl	71	67.467	ENSPLAG00000024026	ncl	51	76.267	Poecilia_latipinna
ENSACIG00000013234	ncl	71	67.467	ENSPMEG00000006000	ncl	51	76.064	Poecilia_mexicana
ENSACIG00000013234	ncl	62	90.786	ENSPNYG00000020494	ncl	70	91.057	Pundamilia_nyererei
ENSACIG00000013234	ncl	62	69.312	ENSPNAG00000006192	ncl	72	70.106	Pygocentrus_nattereri
ENSACIG00000013234	ncl	61	52.800	ENSSHAG00000002702	-	60	52.344	Sarcophilus_harrisii
ENSACIG00000013234	ncl	62	73.670	ENSSFOG00015008583	ncl	75	73.797	Scleropages_formosus
ENSACIG00000013234	ncl	54	44.860	ENSSFOG00015013153	-	76	45.847	Scleropages_formosus
ENSACIG00000013234	ncl	64	45.547	ENSSMAG00000007582	-	61	46.032	Scophthalmus_maximus
ENSACIG00000013234	ncl	62	78.515	ENSSMAG00000021241	ncl	54	78.100	Scophthalmus_maximus
ENSACIG00000013234	ncl	65	43.210	ENSSDUG00000010922	-	70	43.717	Seriola_dumerili
ENSACIG00000013234	ncl	63	81.867	ENSSDUG00000006128	ncl	86	81.867	Seriola_dumerili
ENSACIG00000013234	ncl	63	43.959	ENSSLDG00000015784	-	65	43.684	Seriola_lalandi_dorsalis
ENSACIG00000013234	ncl	62	80.533	ENSSLDG00000002012	ncl	54	81.117	Seriola_lalandi_dorsalis
ENSACIG00000013234	ncl	62	58.612	ENSSPUG00000008244	-	60	58.505	Sphenodon_punctatus
ENSACIG00000013234	ncl	70	42.488	ENSSPAG00000001859	-	61	44.032	Stegastes_partitus
ENSACIG00000013234	ncl	51	78.827	ENSSPAG00000002637	ncl	86	78.827	Stegastes_partitus
ENSACIG00000013234	ncl	60	77.222	ENSTRUG00000008185	ncl	54	77.236	Takifugu_rubripes
ENSACIG00000013234	ncl	62	74.866	ENSTNIG00000012186	ncl	78	74.734	Tetraodon_nigroviridis
ENSACIG00000013234	ncl	77	53.293	ENSXETG00000009517	ncl	71	62.667	Xenopus_tropicalis
ENSACIG00000013234	ncl	64	48.889	ENSXCOG00000003524	ncl	87	59.894	Xiphophorus_couchianus
ENSACIG00000013234	ncl	62	40.633	ENSXCOG00000007369	-	89	40.584	Xiphophorus_couchianus
ENSACIG00000013234	ncl	62	76.533	ENSXMAG00000005914	ncl	51	76.330	Xiphophorus_maculatus