EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000013582 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 4640 bases
Position: chrCCOE01000489.1:2176560-2181199
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000017438	Smg4_UPF3	PF03467.15	2.9e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000017909	-	1365	-	ENSACIP00000017438	454 (aa)	-	-

Gene Model

Click here to download ENSACIG00000013582's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000013582's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000013582	upf3b	92	46.903	ENSACIG00000020468	upf3a	69	70.874

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000013582	upf3b	94	51.762	ENSG00000125351	UPF3B	96	64.286	Homo_sapiens
ENSACIG00000013582	upf3b	100	85.961	ENSAPOG00000012775	upf3b	100	84.881	Acanthochromis_polyacanthus
ENSACIG00000013582	upf3b	94	51.982	ENSAMEG00000000163	UPF3B	94	53.863	Ailuropoda_melanoleuca
ENSACIG00000013582	upf3b	100	86.463	ENSAOCG00000000706	upf3b	100	81.878	Amphiprion_ocellaris
ENSACIG00000013582	upf3b	100	85.313	ENSAPEG00000005545	upf3b	100	84.233	Amphiprion_percula
ENSACIG00000013582	upf3b	100	82.051	ENSATEG00000018742	upf3b	100	77.564	Anabas_testudineus
ENSACIG00000013582	upf3b	89	49.286	ENSACAG00000001540	UPF3A	96	46.620	Anolis_carolinensis
ENSACIG00000013582	upf3b	98	55.202	ENSACAG00000003625	UPF3B	98	54.043	Anolis_carolinensis
ENSACIG00000013582	upf3b	100	51.125	ENSANAG00000025598	-	96	54.386	Aotus_nancymaae
ENSACIG00000013582	upf3b	94	52.193	ENSANAG00000021894	-	97	64.593	Aotus_nancymaae
ENSACIG00000013582	upf3b	100	84.449	ENSACLG00000001649	upf3b	100	83.369	Astatotilapia_calliptera
ENSACIG00000013582	upf3b	66	82.558	ENSAMXG00000000199	upf3b	100	82.558	Astyanax_mexicanus
ENSACIG00000013582	upf3b	55	61.818	ENSBTAG00000035615	UPF3B	88	60.073	Bos_taurus
ENSACIG00000013582	upf3b	94	52.423	ENSCJAG00000004975	UPF3B	97	64.115	Callithrix_jacchus
ENSACIG00000013582	upf3b	94	52.203	ENSCAFG00000018426	UPF3B	96	51.193	Canis_familiaris
ENSACIG00000013582	upf3b	94	52.318	ENSCAFG00020004074	UPF3B	94	52.391	Canis_lupus_dingo
ENSACIG00000013582	upf3b	94	54.681	ENSCHIG00000018011	-	88	59.707	Capra_hircus
ENSACIG00000013582	upf3b	94	54.894	ENSCHIG00000000247	-	94	51.820	Capra_hircus
ENSACIG00000013582	upf3b	94	52.193	ENSTSYG00000014690	UPF3B	96	58.605	Carlito_syrichta
ENSACIG00000013582	upf3b	93	38.688	ENSCCAG00000029813	-	51	58.824	Cebus_capucinus
ENSACIG00000013582	upf3b	55	46.245	ENSCCAG00000021964	-	82	45.276	Cebus_capucinus
ENSACIG00000013582	upf3b	94	51.762	ENSCATG00000017506	UPF3B	97	64.593	Cercocebus_atys
ENSACIG00000013582	upf3b	63	60.968	ENSCLAG00000003260	UPF3B	94	54.646	Chinchilla_lanigera
ENSACIG00000013582	upf3b	63	57.585	ENSCSAG00000018348	UPF3B	100	50.400	Chlorocebus_sabaeus
ENSACIG00000013582	upf3b	97	54.367	ENSCPBG00000020685	UPF3B	96	52.954	Chrysemys_picta_bellii
ENSACIG00000013582	upf3b	55	61.538	ENSCANG00000029220	UPF3B	85	60.073	Colobus_angolensis_palliatus
ENSACIG00000013582	upf3b	67	55.963	ENSCGRG00001006858	-	94	51.648	Cricetulus_griseus_chok1gshd
ENSACIG00000013582	upf3b	67	55.352	ENSCGRG00001013643	-	75	57.143	Cricetulus_griseus_chok1gshd
ENSACIG00000013582	upf3b	86	55.831	ENSCGRG00000007627	Upf3b	93	57.531	Cricetulus_griseus_crigri
ENSACIG00000013582	upf3b	98	47.629	ENSCSEG00000005106	upf3a	51	62.069	Cynoglossus_semilaevis
ENSACIG00000013582	upf3b	99	73.292	ENSCSEG00000002046	upf3b	99	72.500	Cynoglossus_semilaevis
ENSACIG00000013582	upf3b	88	48.926	ENSCVAG00000022333	upf3a	82	48.946	Cyprinodon_variegatus
ENSACIG00000013582	upf3b	100	77.371	ENSCVAG00000005030	upf3b	100	72.629	Cyprinodon_variegatus
ENSACIG00000013582	upf3b	99	63.753	ENSDARG00000000489	upf3b	99	68.657	Danio_rerio
ENSACIG00000013582	upf3b	94	50.964	ENSDNOG00000008665	UPF3B	94	52.575	Dasypus_novemcinctus
ENSACIG00000013582	upf3b	94	54.204	ENSDORG00000006077	Upf3b	94	52.784	Dipodomys_ordii
ENSACIG00000013582	upf3b	94	52.318	ENSEASG00005012919	UPF3B	94	55.188	Equus_asinus_asinus
ENSACIG00000013582	upf3b	94	52.318	ENSECAG00000016947	UPF3B	94	55.188	Equus_caballus
ENSACIG00000013582	upf3b	92	47.816	ENSELUG00000011050	upf3a	86	46.119	Esox_lucius
ENSACIG00000013582	upf3b	99	67.423	ENSELUG00000020389	upf3b	100	65.844	Esox_lucius
ENSACIG00000013582	upf3b	94	52.070	ENSFCAG00000004388	UPF3B	94	53.509	Felis_catus
ENSACIG00000013582	upf3b	94	54.678	ENSFALG00000001569	UPF3B	94	55.509	Ficedula_albicollis
ENSACIG00000013582	upf3b	94	52.527	ENSFDAG00000018869	UPF3B	94	53.659	Fukomys_damarensis
ENSACIG00000013582	upf3b	100	76.774	ENSFHEG00000017895	upf3b	100	75.054	Fundulus_heteroclitus
ENSACIG00000013582	upf3b	60	55.556	ENSGMOG00000019615	upf3a	52	66.864	Gadus_morhua
ENSACIG00000013582	upf3b	100	67.722	ENSGMOG00000001621	upf3b	100	67.797	Gadus_morhua
ENSACIG00000013582	upf3b	99	53.942	ENSGALG00000008618	UPF3B	99	52.165	Gallus_gallus
ENSACIG00000013582	upf3b	100	74.569	ENSGAFG00000000829	upf3b	100	73.491	Gambusia_affinis
ENSACIG00000013582	upf3b	93	47.608	ENSGAFG00000021170	upf3a	89	47.289	Gambusia_affinis
ENSACIG00000013582	upf3b	100	72.747	ENSGACG00000017435	upf3b	94	86.381	Gasterosteus_aculeatus
ENSACIG00000013582	upf3b	97	55.652	ENSGAGG00000001219	UPF3B	96	55.604	Gopherus_agassizii
ENSACIG00000013582	upf3b	94	51.762	ENSGGOG00000023995	UPF3B	98	53.093	Gorilla_gorilla
ENSACIG00000013582	upf3b	100	84.017	ENSHBUG00000017393	upf3b	100	82.937	Haplochromis_burtoni
ENSACIG00000013582	upf3b	71	52.586	ENSHGLG00000011189	-	78	50.294	Heterocephalus_glaber_female
ENSACIG00000013582	upf3b	94	51.868	ENSHGLG00000019582	-	94	53.215	Heterocephalus_glaber_female
ENSACIG00000013582	upf3b	74	52.632	ENSHGLG00100001889	-	54	60.435	Heterocephalus_glaber_male
ENSACIG00000013582	upf3b	94	51.868	ENSHGLG00100002042	-	94	50.661	Heterocephalus_glaber_male
ENSACIG00000013582	upf3b	100	71.822	ENSHCOG00000017004	upf3b	100	66.951	Hippocampus_comes
ENSACIG00000013582	upf3b	93	44.804	ENSHCOG00000013985	upf3a	66	69.182	Hippocampus_comes
ENSACIG00000013582	upf3b	100	67.091	ENSIPUG00000019249	upf3b	100	66.242	Ictalurus_punctatus
ENSACIG00000013582	upf3b	91	50.797	ENSIPUG00000023450	upf3a	84	49.176	Ictalurus_punctatus
ENSACIG00000013582	upf3b	94	51.322	ENSSTOG00000001101	UPF3B	94	52.412	Ictidomys_tridecemlineatus
ENSACIG00000013582	upf3b	94	50.877	ENSJJAG00000000053	Upf3b	94	51.868	Jaculus_jaculus
ENSACIG00000013582	upf3b	100	78.186	ENSKMAG00000020300	upf3b	100	77.322	Kryptolebias_marmoratus
ENSACIG00000013582	upf3b	59	85.507	ENSLBEG00000028689	upf3b	58	80.682	Labrus_bergylta
ENSACIG00000013582	upf3b	100	56.522	ENSLACG00000008691	UPF3B	100	57.732	Latimeria_chalumnae
ENSACIG00000013582	upf3b	99	62.473	ENSLOCG00000015238	upf3b	100	62.393	Lepisosteus_oculatus
ENSACIG00000013582	upf3b	96	51.398	ENSLAFG00000001267	UPF3B	96	53.448	Loxodonta_africana
ENSACIG00000013582	upf3b	94	51.542	ENSMFAG00000045414	UPF3B	97	64.593	Macaca_fascicularis
ENSACIG00000013582	upf3b	94	51.542	ENSMMUG00000020222	UPF3B	97	64.593	Macaca_mulatta
ENSACIG00000013582	upf3b	94	51.542	ENSMNEG00000039794	UPF3B	97	64.593	Macaca_nemestrina
ENSACIG00000013582	upf3b	94	51.762	ENSMLEG00000010999	UPF3B	97	64.593	Mandrillus_leucophaeus
ENSACIG00000013582	upf3b	100	84.665	ENSMZEG00005007871	upf3b	100	83.585	Maylandia_zebra
ENSACIG00000013582	upf3b	86	48.649	ENSMGAG00000014837	UPF3A	94	44.717	Meleagris_gallopavo
ENSACIG00000013582	upf3b	83	53.453	ENSMGAG00000007728	UPF3B	99	52.538	Meleagris_gallopavo
ENSACIG00000013582	upf3b	94	49.339	ENSMAUG00000008705	Upf3b	90	50.805	Mesocricetus_auratus
ENSACIG00000013582	upf3b	55	61.818	ENSMICG00000001743	UPF3B	85	60.073	Microcebus_murinus
ENSACIG00000013582	upf3b	99	48.992	ENSMOCG00000017893	Upf3b	100	48.193	Microtus_ochrogaster
ENSACIG00000013582	upf3b	100	79.482	ENSMMOG00000004183	upf3b	100	78.834	Mola_mola
ENSACIG00000013582	upf3b	90	55.714	ENSMODG00000010232	UPF3B	96	52.998	Monodelphis_domestica
ENSACIG00000013582	upf3b	92	49.074	ENSMODG00000003159	UPF3A	52	63.090	Monodelphis_domestica
ENSACIG00000013582	upf3b	100	82.189	ENSMALG00000008042	upf3b	100	81.974	Monopterus_albus
ENSACIG00000013582	upf3b	94	51.322	MGP_CAROLIEiJ_G0032999	Upf3b	83	53.202	Mus_caroli
ENSACIG00000013582	upf3b	94	51.096	ENSMUSG00000036572	Upf3b	94	50.769	Mus_musculus
ENSACIG00000013582	upf3b	94	51.322	MGP_PahariEiJ_G0031543	Upf3b	83	53.202	Mus_pahari
ENSACIG00000013582	upf3b	94	51.096	MGP_SPRETEiJ_G0034152	Upf3b	94	50.769	Mus_spretus
ENSACIG00000013582	upf3b	71	57.429	ENSMPUG00000001531	UPF3B	96	53.642	Mustela_putorius_furo
ENSACIG00000013582	upf3b	94	52.412	ENSMLUG00000010821	UPF3B	83	56.608	Myotis_lucifugus
ENSACIG00000013582	upf3b	94	51.101	ENSNGAG00000008231	Upf3b	94	51.327	Nannospalax_galili
ENSACIG00000013582	upf3b	89	53.606	ENSNLEG00000014897	UPF3B	88	54.567	Nomascus_leucogenys
ENSACIG00000013582	upf3b	94	54.167	ENSODEG00000002186	-	94	52.328	Octodon_degus
ENSACIG00000013582	upf3b	100	85.591	ENSONIG00000002536	upf3b	100	84.946	Oreochromis_niloticus
ENSACIG00000013582	upf3b	94	51.392	ENSOCUG00000010213	UPF3B	94	51.386	Oryctolagus_cuniculus
ENSACIG00000013582	upf3b	100	73.650	ENSORLG00000001026	upf3b	100	72.354	Oryzias_latipes
ENSACIG00000013582	upf3b	97	49.036	ENSORLG00000010911	upf3a	55	64.394	Oryzias_latipes
ENSACIG00000013582	upf3b	100	73.218	ENSORLG00020003758	upf3b	100	76.562	Oryzias_latipes_hni
ENSACIG00000013582	upf3b	100	73.002	ENSORLG00015012954	upf3b	100	71.706	Oryzias_latipes_hsok
ENSACIG00000013582	upf3b	100	73.650	ENSOMEG00000014736	upf3b	100	73.218	Oryzias_melastigma
ENSACIG00000013582	upf3b	94	50.552	ENSOGAG00000033003	-	85	52.250	Otolemur_garnettii
ENSACIG00000013582	upf3b	94	51.868	ENSOGAG00000004643	-	94	53.289	Otolemur_garnettii
ENSACIG00000013582	upf3b	94	54.545	ENSOARG00000016051	-	94	51.489	Ovis_aries
ENSACIG00000013582	upf3b	94	51.762	ENSPPAG00000040390	UPF3B	98	53.093	Pan_paniscus
ENSACIG00000013582	upf3b	94	52.412	ENSPPRG00000023536	UPF3B	94	52.851	Panthera_pardus
ENSACIG00000013582	upf3b	94	51.483	ENSPTIG00000015264	UPF3B	94	53.017	Panthera_tigris_altaica
ENSACIG00000013582	upf3b	94	51.762	ENSPTRG00000022228	UPF3B	98	53.093	Pan_troglodytes
ENSACIG00000013582	upf3b	94	51.762	ENSPANG00000000900	UPF3B	97	64.593	Papio_anubis
ENSACIG00000013582	upf3b	99	65.812	ENSPKIG00000019226	upf3b	92	82.394	Paramormyrops_kingsleyae
ENSACIG00000013582	upf3b	55	58.846	ENSPSIG00000005833	UPF3B	66	67.021	Pelodiscus_sinensis
ENSACIG00000013582	upf3b	87	49.302	ENSPSIG00000007468	UPF3A	54	62.338	Pelodiscus_sinensis
ENSACIG00000013582	upf3b	57	84.733	ENSPMGG00000016067	upf3b	95	85.115	Periophthalmus_magnuspinnatus
ENSACIG00000013582	upf3b	93	47.778	ENSPMGG00000012696	upf3a	87	48.649	Periophthalmus_magnuspinnatus
ENSACIG00000013582	upf3b	94	53.478	ENSPEMG00000012352	Upf3b	94	49.469	Peromyscus_maniculatus_bairdii
ENSACIG00000013582	upf3b	83	50.847	ENSPCIG00000019590	-	66	65.333	Phascolarctos_cinereus
ENSACIG00000013582	upf3b	92	56.410	ENSPCIG00000028914	UPF3B	83	56.000	Phascolarctos_cinereus
ENSACIG00000013582	upf3b	93	48.519	ENSPFOG00000013222	upf3a	51	63.218	Poecilia_formosa
ENSACIG00000013582	upf3b	93	46.262	ENSPLAG00000011960	upf3a	88	44.000	Poecilia_latipinna
ENSACIG00000013582	upf3b	100	75.431	ENSPLAG00000019922	upf3b	100	74.353	Poecilia_latipinna
ENSACIG00000013582	upf3b	100	75.431	ENSPLAG00000005105	upf3b	100	74.353	Poecilia_latipinna
ENSACIG00000013582	upf3b	93	47.253	ENSPMEG00000000836	upf3a	50	62.661	Poecilia_mexicana
ENSACIG00000013582	upf3b	100	75.216	ENSPMEG00000023532	upf3b	100	74.138	Poecilia_mexicana
ENSACIG00000013582	upf3b	56	61.314	ENSPPYG00000020675	-	82	59.854	Pongo_abelii
ENSACIG00000013582	upf3b	94	53.319	ENSPCAG00000009464	UPF3B	94	52.484	Procavia_capensis
ENSACIG00000013582	upf3b	94	53.070	ENSPCOG00000021960	UPF3B	94	52.632	Propithecus_coquereli
ENSACIG00000013582	upf3b	94	47.447	ENSPVAG00000014075	UPF3B	94	43.534	Pteropus_vampyrus
ENSACIG00000013582	upf3b	100	84.665	ENSPNYG00000009846	upf3b	100	83.153	Pundamilia_nyererei
ENSACIG00000013582	upf3b	99	69.296	ENSPNAG00000021528	upf3b	100	77.907	Pygocentrus_nattereri
ENSACIG00000013582	upf3b	67	55.963	ENSRNOG00000039994	Upf3b	94	50.549	Rattus_norvegicus
ENSACIG00000013582	upf3b	94	51.762	ENSRROG00000041031	UPF3B	97	64.593	Rhinopithecus_roxellana
ENSACIG00000013582	upf3b	94	52.863	ENSSBOG00000019740	UPF3B	99	63.158	Saimiri_boliviensis_boliviensis
ENSACIG00000013582	upf3b	93	48.526	ENSSHAG00000009895	UPF3A	53	62.393	Sarcophilus_harrisii
ENSACIG00000013582	upf3b	98	54.772	ENSSHAG00000008634	UPF3B	99	53.222	Sarcophilus_harrisii
ENSACIG00000013582	upf3b	94	48.753	ENSSFOG00015021851	upf3a	90	48.402	Scleropages_formosus
ENSACIG00000013582	upf3b	99	65.021	ENSSFOG00015005614	upf3b	100	63.519	Scleropages_formosus
ENSACIG00000013582	upf3b	100	79.744	ENSSMAG00000012913	upf3b	100	81.712	Scophthalmus_maximus
ENSACIG00000013582	upf3b	100	85.591	ENSSDUG00000005682	upf3b	100	82.366	Seriola_dumerili
ENSACIG00000013582	upf3b	93	47.111	ENSSDUG00000009680	upf3a	55	71.910	Seriola_dumerili
ENSACIG00000013582	upf3b	100	86.452	ENSSLDG00000003130	upf3b	100	82.151	Seriola_lalandi_dorsalis
ENSACIG00000013582	upf3b	85	50.732	ENSSARG00000004147	UPF3B	93	54.854	Sorex_araneus
ENSACIG00000013582	upf3b	99	54.898	ENSSPUG00000013082	UPF3B	99	49.281	Sphenodon_punctatus
ENSACIG00000013582	upf3b	99	85.435	ENSSPAG00000009989	upf3b	99	84.783	Stegastes_partitus
ENSACIG00000013582	upf3b	93	45.244	ENSSPAG00000007938	upf3a	72	67.516	Stegastes_partitus
ENSACIG00000013582	upf3b	94	52.193	ENSSSCG00000012617	UPF3B	94	53.422	Sus_scrofa
ENSACIG00000013582	upf3b	87	51.716	ENSTGUG00000009493	UPF3A	98	46.747	Taeniopygia_guttata
ENSACIG00000013582	upf3b	87	54.342	ENSTGUG00000003413	UPF3B	93	56.404	Taeniopygia_guttata
ENSACIG00000013582	upf3b	100	76.989	ENSTRUG00000010645	upf3b	100	72.258	Takifugu_rubripes
ENSACIG00000013582	upf3b	99	67.452	ENSTNIG00000015763	upf3b	100	62.179	Tetraodon_nigroviridis
ENSACIG00000013582	upf3b	94	44.206	ENSTBEG00000003229	UPF3B	63	53.535	Tupaia_belangeri
ENSACIG00000013582	upf3b	94	53.524	ENSUAMG00000024565	UPF3B	94	54.066	Ursus_americanus
ENSACIG00000013582	upf3b	87	55.556	ENSUMAG00000002150	UPF3B	84	54.433	Ursus_maritimus
ENSACIG00000013582	upf3b	81	51.145	ENSVPAG00000009971	UPF3B	93	53.571	Vicugna_pacos
ENSACIG00000013582	upf3b	94	52.318	ENSVVUG00000011594	UPF3B	97	63.158	Vulpes_vulpes
ENSACIG00000013582	upf3b	97	50.435	ENSXETG00000007440	upf3b	94	69.124	Xenopus_tropicalis
ENSACIG00000013582	upf3b	93	46.729	ENSXCOG00000018591	upf3a	50	61.181	Xiphophorus_couchianus
ENSACIG00000013582	upf3b	100	66.161	ENSXCOG00000016586	upf3b	98	85.714	Xiphophorus_couchianus
ENSACIG00000013582	upf3b	100	74.569	ENSXMAG00000013680	upf3b	100	73.491	Xiphophorus_maculatus
ENSACIG00000013582	upf3b	93	48.724	ENSXMAG00000013452	upf3a	84	48.975	Xiphophorus_maculatus