EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000014426 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 10122 bases
Position: chrCCOE01001473.1:877543-887664
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000018496	zf-C2H2	PF00096.26	1.2e-18	1	3
ENSACIP00000018496	zf-C2H2	PF00096.26	1.2e-18	2	3
ENSACIP00000018496	zf-C2H2	PF00096.26	1.2e-18	3	3
ENSACIP00000018496	zf-met	PF12874.7	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000018993	-	1851	-	ENSACIP00000018496	616 (aa)	-	-
ENSACIT00000019003	-	1347	-	ENSACIP00000018506	449 (aa)	-	-

Gene Model

Click here to download ENSACIG00000014426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000014426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000014426	prdm1b	56	67.188	ENSACIG00000009747	-	78	37.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000014426	prdm1b	62	78.075	ENSAPOG00000022084	prdm1b	84	77.889	Acanthochromis_polyacanthus
ENSACIG00000014426	prdm1b	75	66.154	ENSAPOG00000014135	-	62	66.154	Acanthochromis_polyacanthus
ENSACIG00000014426	prdm1b	96	70.764	ENSAOCG00000002230	prdm1b	99	72.727	Amphiprion_ocellaris
ENSACIG00000014426	prdm1b	98	71.144	ENSAPEG00000019826	prdm1b	97	72.020	Amphiprion_percula
ENSACIG00000014426	prdm1b	55	68.182	ENSATEG00000021017	prdm1a	58	68.182	Anabas_testudineus
ENSACIG00000014426	prdm1b	93	37.842	ENSATEG00000014034	-	79	37.842	Anabas_testudineus
ENSACIG00000014426	prdm1b	98	79.242	ENSATEG00000006924	prdm1b	97	79.242	Anabas_testudineus
ENSACIG00000014426	prdm1b	93	86.806	ENSACLG00000005487	prdm1b	89	86.806	Astatotilapia_calliptera
ENSACIG00000014426	prdm1b	65	63.636	ENSCSEG00000009707	prdm1a	60	63.636	Cynoglossus_semilaevis
ENSACIG00000014426	prdm1b	65	66.667	ENSCVAG00000019081	prdm1a	52	66.667	Cyprinodon_variegatus
ENSACIG00000014426	prdm1b	97	74.461	ENSCVAG00000016746	prdm1b	96	74.585	Cyprinodon_variegatus
ENSACIG00000014426	prdm1b	98	75.497	ENSFHEG00000019848	prdm1b	97	75.497	Fundulus_heteroclitus
ENSACIG00000014426	prdm1b	97	76.847	ENSGAFG00000016191	prdm1b	96	77.340	Gambusia_affinis
ENSACIG00000014426	prdm1b	92	69.522	ENSGACG00000002716	prdm1b	85	69.243	Gasterosteus_aculeatus
ENSACIG00000014426	prdm1b	94	86.528	ENSHBUG00000001475	prdm1b	95	86.528	Haplochromis_burtoni
ENSACIG00000014426	prdm1b	97	70.549	ENSHCOG00000003617	prdm1b	96	70.549	Hippocampus_comes
ENSACIG00000014426	prdm1b	90	52.921	ENSIPUG00000013740	prdm1b	91	52.921	Ictalurus_punctatus
ENSACIG00000014426	prdm1b	92	73.369	ENSKMAG00000011218	prdm1b	90	73.369	Kryptolebias_marmoratus
ENSACIG00000014426	prdm1b	88	38.274	ENSKMAG00000016247	-	74	38.274	Kryptolebias_marmoratus
ENSACIG00000014426	prdm1b	98	77.377	ENSLBEG00000020955	prdm1b	97	77.377	Labrus_bergylta
ENSACIG00000014426	prdm1b	75	75.362	ENSLOCG00000004978	prdm1b	62	75.362	Lepisosteus_oculatus
ENSACIG00000014426	prdm1b	97	84.859	ENSMZEG00005026361	prdm1b	91	84.859	Maylandia_zebra
ENSACIG00000014426	prdm1b	96	78.057	ENSMMOG00000013458	prdm1b	98	78.057	Mola_mola
ENSACIG00000014426	prdm1b	97	75.207	ENSMALG00000011410	prdm1b	98	75.372	Monopterus_albus
ENSACIG00000014426	prdm1b	89	89.157	ENSONIG00000013583	prdm1b	74	89.157	Oreochromis_niloticus
ENSACIG00000014426	prdm1b	97	68.395	ENSORLG00000010025	prdm1b	97	68.618	Oryzias_latipes
ENSACIG00000014426	prdm1b	92	70.000	ENSORLG00015009022	prdm1b	92	69.898	Oryzias_latipes_hsok
ENSACIG00000014426	prdm1b	72	75.000	ENSPKIG00000022335	prdm1b	75	47.276	Paramormyrops_kingsleyae
ENSACIG00000014426	prdm1b	87	69.414	ENSPFOG00000003103	prdm1b	84	69.414	Poecilia_formosa
ENSACIG00000014426	prdm1b	97	78.808	ENSPLAG00000018491	prdm1b	96	78.808	Poecilia_latipinna
ENSACIG00000014426	prdm1b	98	78.783	ENSPMEG00000007869	prdm1b	97	78.783	Poecilia_mexicana
ENSACIG00000014426	prdm1b	97	77.905	ENSPREG00000011327	prdm1b	96	77.905	Poecilia_reticulata
ENSACIG00000014426	prdm1b	70	66.667	ENSPVAG00000011732	PRDM1	58	66.667	Pteropus_vampyrus
ENSACIG00000014426	prdm1b	90	39.968	ENSPNAG00000028442	prdm1a	75	39.968	Pygocentrus_nattereri
ENSACIG00000014426	prdm1b	90	58.289	ENSSFOG00015021896	prdm1b	77	58.289	Scleropages_formosus
ENSACIG00000014426	prdm1b	98	76.183	ENSSMAG00000020467	prdm1b	97	76.481	Scophthalmus_maximus
ENSACIG00000014426	prdm1b	98	81.148	ENSSDUG00000020610	prdm1b	97	81.148	Seriola_dumerili
ENSACIG00000014426	prdm1b	88	38.548	ENSSDUG00000000524	-	74	38.548	Seriola_dumerili
ENSACIG00000014426	prdm1b	97	80.858	ENSSLDG00000021973	prdm1b	98	80.858	Seriola_lalandi_dorsalis
ENSACIG00000014426	prdm1b	88	37.760	ENSSLDG00000001957	-	74	37.760	Seriola_lalandi_dorsalis
ENSACIG00000014426	prdm1b	94	78.522	ENSSPAG00000000803	prdm1b	97	77.944	Stegastes_partitus
ENSACIG00000014426	prdm1b	87	40.098	ENSSPAG00000009830	-	73	40.098	Stegastes_partitus
ENSACIG00000014426	prdm1b	95	78.778	ENSXCOG00000018920	prdm1b	84	78.778	Xiphophorus_couchianus
ENSACIG00000014426	prdm1b	95	77.265	ENSXMAG00000016765	prdm1b	95	77.265	Xiphophorus_maculatus