EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000015982 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 10175 bases
Position: chrCCOE01001432.1:999226-1009400
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000020650	RNA_pol_Rpb1_5	PF04998.17	2.9e-101	1	1
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	1	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	2	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	3	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	4	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	5	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	6	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	7	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	8	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	9	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	10	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	11	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	12	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	13	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	14	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	15	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	16	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	17	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	18	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	19	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	20	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	21	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	22	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	23	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	24	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	25	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	26	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	27	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	28	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	29	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	30	31
ENSACIP00000020650	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	31	31
ENSACIP00000020650	RNA_pol_Rpb1_4	PF05000.17	1.2e-37	1	1
ENSACIP00000020650	RNA_pol_Rpb1_2	PF00623.20	5.6e-75	1	1
ENSACIP00000020650	RNA_pol_Rpb1_3	PF04983.18	2.7e-50	1	1
ENSACIP00000020650	RNA_pol_Rpb1_1	PF04997.12	7.7e-109	1	1
ENSACIP00000020650	RNA_pol_Rpb1_7	PF04990.12	5.9e-55	1	1
ENSACIP00000020650	RNA_pol_Rpb1_6	PF04992.14	2.8e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000021187	-	5787	-	ENSACIP00000020650	1928 (aa)	-	-

Gene Model

Click here to download ENSACIG00000015982's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000015982's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000015982	polr2a	64	37.665	ENSACIG00000024504	polr3a	89	37.665

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000015982	polr2a	82	96.464	ENSAPOG00000006552	polr2a	90	95.844	Acanthochromis_polyacanthus
ENSACIG00000015982	polr2a	81	92.131	ENSAMEG00000016265	-	82	92.141	Ailuropoda_melanoleuca
ENSACIG00000015982	polr2a	100	96.823	ENSAOCG00000004255	polr2a	100	95.021	Amphiprion_ocellaris
ENSACIG00000015982	polr2a	100	99.066	ENSAPEG00000012623	polr2a	100	99.066	Amphiprion_percula
ENSACIG00000015982	polr2a	100	98.755	ENSATEG00000019644	polr2a	100	98.755	Anabas_testudineus
ENSACIG00000015982	polr2a	81	92.795	ENSACAG00000014561	POLR2A	82	92.804	Anolis_carolinensis
ENSACIG00000015982	polr2a	81	94.787	ENSANAG00000020093	-	82	94.794	Aotus_nancymaae
ENSACIG00000015982	polr2a	100	99.015	ENSACLG00000006735	polr2a	100	99.015	Astatotilapia_calliptera
ENSACIG00000015982	polr2a	100	97.770	ENSAMXG00000020046	polr2a	100	97.770	Astyanax_mexicanus
ENSACIG00000015982	polr2a	81	92.489	ENSBTAG00000046765	POLR2A	82	92.498	Bos_taurus
ENSACIG00000015982	polr2a	81	92.427	ENSCAFG00000016532	POLR2A	99	91.816	Canis_familiaris
ENSACIG00000015982	polr2a	81	94.024	ENSCAFG00020007929	-	81	94.032	Canis_lupus_dingo
ENSACIG00000015982	polr2a	81	92.489	ENSCHIG00000027173	-	82	92.498	Capra_hircus
ENSACIG00000015982	polr2a	92	92.308	ENSTSYG00000012803	-	82	94.794	Carlito_syrichta
ENSACIG00000015982	polr2a	98	89.216	ENSCAPG00000001882	-	100	90.337	Cavia_aperea
ENSACIG00000015982	polr2a	99	87.849	ENSCPOG00000014812	-	99	93.587	Cavia_porcellus
ENSACIG00000015982	polr2a	81	94.787	ENSCCAG00000020938	-	82	94.794	Cebus_capucinus
ENSACIG00000015982	polr2a	81	94.024	ENSCATG00000013680	-	82	94.032	Cercocebus_atys
ENSACIG00000015982	polr2a	81	94.660	ENSCLAG00000012196	-	82	94.667	Chinchilla_lanigera
ENSACIG00000015982	polr2a	81	83.652	ENSCSAG00000011644	-	82	83.672	Chlorocebus_sabaeus
ENSACIG00000015982	polr2a	90	84.334	ENSCPBG00000012697	POLR2A	99	86.111	Chrysemys_picta_bellii
ENSACIG00000015982	polr2a	98	75.682	ENSCING00000007884	-	99	75.916	Ciona_intestinalis
ENSACIG00000015982	polr2a	98	75.000	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSACIG00000015982	polr2a	81	93.140	ENSCANG00000010622	-	82	93.149	Colobus_angolensis_palliatus
ENSACIG00000015982	polr2a	81	89.574	ENSCGRG00001003538	Polr2a	81	89.587	Cricetulus_griseus_chok1gshd
ENSACIG00000015982	polr2a	81	91.079	ENSCGRG00000012105	Polr2a	85	91.090	Cricetulus_griseus_crigri
ENSACIG00000015982	polr2a	99	97.613	ENSCSEG00000002635	polr2a	100	97.613	Cynoglossus_semilaevis
ENSACIG00000015982	polr2a	100	96.897	ENSCVAG00000005156	polr2a	100	96.389	Cyprinodon_variegatus
ENSACIG00000015982	polr2a	100	95.323	ENSDARG00000099966	polr2a	100	94.814	Danio_rerio
ENSACIG00000015982	polr2a	81	89.006	ENSDNOG00000016482	-	82	89.019	Dasypus_novemcinctus
ENSACIG00000015982	polr2a	81	94.787	ENSDORG00000008667	Polr2a	82	94.794	Dipodomys_ordii
ENSACIG00000015982	polr2a	99	68.516	FBgn0003277	RpII215	99	74.658	Drosophila_melanogaster
ENSACIG00000015982	polr2a	94	87.642	ENSETEG00000002540	-	87	87.757	Echinops_telfairi
ENSACIG00000015982	polr2a	81	85.527	ENSEBUG00000013967	polr2a	82	84.950	Eptatretus_burgeri
ENSACIG00000015982	polr2a	81	92.689	ENSEASG00005019114	-	82	92.698	Equus_asinus_asinus
ENSACIG00000015982	polr2a	81	92.489	ENSECAG00000018485	POLR2A	82	92.498	Equus_caballus
ENSACIG00000015982	polr2a	85	94.660	ENSEEUG00000001154	-	95	94.660	Erinaceus_europaeus
ENSACIG00000015982	polr2a	88	95.205	ENSELUG00000014284	polr2a	84	95.205	Esox_lucius
ENSACIG00000015982	polr2a	81	94.132	ENSFDAG00000008287	-	82	94.140	Fukomys_damarensis
ENSACIG00000015982	polr2a	99	96.294	ENSFHEG00000001768	polr2a	99	95.161	Fundulus_heteroclitus
ENSACIG00000015982	polr2a	99	90.723	ENSGMOG00000007725	polr2a	100	90.738	Gadus_morhua
ENSACIG00000015982	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	93.382	Gambusia_affinis
ENSACIG00000015982	polr2a	99	91.100	ENSGACG00000019366	polr2a	100	93.540	Gasterosteus_aculeatus
ENSACIG00000015982	polr2a	81	91.931	ENSGGOG00000014800	-	96	93.096	Gorilla_gorilla
ENSACIG00000015982	polr2a	99	98.981	ENSHBUG00000018937	polr2a	98	98.981	Haplochromis_burtoni
ENSACIG00000015982	polr2a	81	94.851	ENSHGLG00000012381	POLR2A	82	94.857	Heterocephalus_glaber_female
ENSACIG00000015982	polr2a	81	94.851	ENSHGLG00100014843	POLR2A	82	94.857	Heterocephalus_glaber_male
ENSACIG00000015982	polr2a	100	96.236	ENSHCOG00000011874	polr2a	100	95.727	Hippocampus_comes
ENSACIG00000015982	polr2a	100	97.303	ENSIPUG00000002613	Polr2a	100	97.303	Ictalurus_punctatus
ENSACIG00000015982	polr2a	81	94.787	ENSSTOG00000001304	-	82	94.794	Ictidomys_tridecemlineatus
ENSACIG00000015982	polr2a	81	94.787	ENSJJAG00000013049	Polr2a	82	94.794	Jaculus_jaculus
ENSACIG00000015982	polr2a	81	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSACIG00000015982	polr2a	99	98.443	ENSLBEG00000027652	polr2a	100	98.443	Labrus_bergylta
ENSACIG00000015982	polr2a	80	83.365	ENSLACG00000012071	POLR2A	81	83.439	Latimeria_chalumnae
ENSACIG00000015982	polr2a	89	94.707	ENSLOCG00000013863	polr2a	85	90.653	Lepisosteus_oculatus
ENSACIG00000015982	polr2a	93	89.516	ENSLAFG00000008626	-	86	91.878	Loxodonta_africana
ENSACIG00000015982	polr2a	51	93.258	ENSMFAG00000007042	-	99	93.258	Macaca_fascicularis
ENSACIG00000015982	polr2a	81	94.723	ENSMMUG00000023620	-	91	91.816	Macaca_mulatta
ENSACIG00000015982	polr2a	81	94.278	ENSMNEG00000040407	-	81	94.286	Macaca_nemestrina
ENSACIG00000015982	polr2a	80	90.208	ENSMLEG00000030263	-	99	93.258	Mandrillus_leucophaeus
ENSACIG00000015982	polr2a	100	96.745	ENSMAMG00000003351	polr2a	100	96.236	Mastacembelus_armatus
ENSACIG00000015982	polr2a	100	98.133	ENSMZEG00005021429	polr2a	100	98.133	Maylandia_zebra
ENSACIG00000015982	polr2a	51	94.495	ENSMAUG00000021055	-	99	94.495	Mesocricetus_auratus
ENSACIG00000015982	polr2a	81	93.837	ENSMICG00000013372	-	98	93.756	Microcebus_murinus
ENSACIG00000015982	polr2a	99	92.322	ENSMOCG00000018279	Polr2a	100	92.332	Microtus_ochrogaster
ENSACIG00000015982	polr2a	84	95.720	ENSMMOG00000012515	polr2a	92	95.099	Mola_mola
ENSACIG00000015982	polr2a	81	92.117	ENSMODG00000007009	-	82	92.126	Monodelphis_domestica
ENSACIG00000015982	polr2a	91	96.097	ENSMALG00000008716	polr2a	99	98.475	Monopterus_albus
ENSACIG00000015982	polr2a	81	94.787	MGP_CAROLIEiJ_G0016587	Polr2a	82	94.794	Mus_caroli
ENSACIG00000015982	polr2a	81	94.787	ENSMUSG00000005198	Polr2a	82	94.794	Mus_musculus
ENSACIG00000015982	polr2a	81	90.358	MGP_PahariEiJ_G0017718	Polr2a	82	90.370	Mus_pahari
ENSACIG00000015982	polr2a	81	94.787	MGP_SPRETEiJ_G0017423	Polr2a	82	94.794	Mus_spretus
ENSACIG00000015982	polr2a	81	92.365	ENSMPUG00000009648	-	82	92.374	Mustela_putorius_furo
ENSACIG00000015982	polr2a	81	91.878	ENSMLUG00000009088	-	82	91.889	Myotis_lucifugus
ENSACIG00000015982	polr2a	81	94.787	ENSNGAG00000002543	Polr2a	82	94.794	Nannospalax_galili
ENSACIG00000015982	polr2a	100	99.066	ENSNBRG00000002005	polr2a	100	99.066	Neolamprologus_brichardi
ENSACIG00000015982	polr2a	81	94.787	ENSNLEG00000009460	-	82	94.794	Nomascus_leucogenys
ENSACIG00000015982	polr2a	93	95.207	ENSMEUG00000008611	-	96	85.407	Notamacropus_eugenii
ENSACIG00000015982	polr2a	80	92.167	ENSOPRG00000015116	-	99	91.535	Ochotona_princeps
ENSACIG00000015982	polr2a	81	91.227	ENSODEG00000017674	-	83	91.661	Octodon_degus
ENSACIG00000015982	polr2a	100	97.406	ENSONIG00000009231	polr2a	100	96.897	Oreochromis_niloticus
ENSACIG00000015982	polr2a	99	88.563	ENSOCUG00000017929	-	100	91.754	Oryctolagus_cuniculus
ENSACIG00000015982	polr2a	100	98.548	ENSORLG00000006431	polr2a	100	98.548	Oryzias_latipes
ENSACIG00000015982	polr2a	100	98.548	ENSORLG00020010235	polr2a	100	98.548	Oryzias_latipes_hni
ENSACIG00000015982	polr2a	100	98.444	ENSORLG00015007075	polr2a	100	98.444	Oryzias_latipes_hsok
ENSACIG00000015982	polr2a	91	95.769	ENSOMEG00000010713	polr2a	99	98.124	Oryzias_melastigma
ENSACIG00000015982	polr2a	81	92.489	ENSOGAG00000033608	-	82	92.498	Otolemur_garnettii
ENSACIG00000015982	polr2a	84	92.489	ENSOARG00000013874	-	90	91.878	Ovis_aries
ENSACIG00000015982	polr2a	81	94.690	ENSPPAG00000043734	-	89	90.338	Pan_paniscus
ENSACIG00000015982	polr2a	81	94.787	ENSPTRG00000008691	POLR2A	82	94.794	Pan_troglodytes
ENSACIG00000015982	polr2a	81	94.024	ENSPANG00000024099	-	82	94.032	Papio_anubis
ENSACIG00000015982	polr2a	77	95.656	ENSPKIG00000005727	polr2a	85	95.656	Paramormyrops_kingsleyae
ENSACIG00000015982	polr2a	98	90.826	ENSPSIG00000014006	POLR2A	100	90.685	Pelodiscus_sinensis
ENSACIG00000015982	polr2a	100	97.758	ENSPMGG00000019734	polr2a	100	97.758	Periophthalmus_magnuspinnatus
ENSACIG00000015982	polr2a	81	94.787	ENSPEMG00000012521	Polr2a	82	94.794	Peromyscus_maniculatus_bairdii
ENSACIG00000015982	polr2a	82	92.122	ENSPCIG00000028851	-	82	91.501	Phascolarctos_cinereus
ENSACIG00000015982	polr2a	99	96.728	ENSPFOG00000007890	polr2a	85	95.533	Poecilia_formosa
ENSACIG00000015982	polr2a	99	96.932	ENSPLAG00000007399	polr2a	99	96.932	Poecilia_latipinna
ENSACIG00000015982	polr2a	100	98.761	ENSPMEG00000002071	polr2a	99	98.761	Poecilia_mexicana
ENSACIG00000015982	polr2a	100	98.755	ENSPREG00000013122	polr2a	100	98.755	Poecilia_reticulata
ENSACIG00000015982	polr2a	81	92.489	ENSPPYG00000007924	-	82	91.878	Pongo_abelii
ENSACIG00000015982	polr2a	73	95.132	ENSPCAG00000006951	-	74	95.132	Procavia_capensis
ENSACIG00000015982	polr2a	81	94.787	ENSPCOG00000025260	-	82	94.794	Propithecus_coquereli
ENSACIG00000015982	polr2a	81	92.179	ENSPVAG00000005069	-	82	92.188	Pteropus_vampyrus
ENSACIG00000015982	polr2a	100	96.999	ENSPNYG00000022340	polr2a	100	96.490	Pundamilia_nyererei
ENSACIG00000015982	polr2a	100	95.982	ENSPNAG00000011237	polr2a	100	95.473	Pygocentrus_nattereri
ENSACIG00000015982	polr2a	81	92.427	ENSRNOG00000028834	Polr2a	82	92.436	Rattus_norvegicus
ENSACIG00000015982	polr2a	81	94.723	ENSRBIG00000002471	-	91	91.811	Rhinopithecus_bieti
ENSACIG00000015982	polr2a	81	92.427	ENSRROG00000029583	-	82	91.816	Rhinopithecus_roxellana
ENSACIG00000015982	polr2a	84	50.522	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSACIG00000015982	polr2a	81	94.787	ENSSBOG00000000808	-	82	94.794	Saimiri_boliviensis_boliviensis
ENSACIG00000015982	polr2a	99	97.720	ENSSFOG00015023275	polr2a	100	97.720	Scleropages_formosus
ENSACIG00000015982	polr2a	100	95.931	ENSSMAG00000009137	polr2a	100	95.422	Scophthalmus_maximus
ENSACIG00000015982	polr2a	100	98.807	ENSSDUG00000020466	polr2a	100	98.807	Seriola_dumerili
ENSACIG00000015982	polr2a	100	98.755	ENSSLDG00000020613	polr2a	100	98.755	Seriola_lalandi_dorsalis
ENSACIG00000015982	polr2a	97	88.278	ENSSARG00000005875	-	99	88.414	Sorex_araneus
ENSACIG00000015982	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSACIG00000015982	polr2a	81	91.558	ENSSSCG00000028278	-	82	91.569	Sus_scrofa
ENSACIG00000015982	polr2a	98	90.208	ENSTRUG00000012320	polr2a	81	89.820	Takifugu_rubripes
ENSACIG00000015982	polr2a	92	94.603	ENSTNIG00000010136	polr2a	100	92.746	Tetraodon_nigroviridis
ENSACIG00000015982	polr2a	76	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSACIG00000015982	polr2a	81	90.813	ENSTTRG00000014273	-	82	90.825	Tursiops_truncatus
ENSACIG00000015982	polr2a	93	94.356	ENSUAMG00000014866	-	100	91.484	Ursus_americanus
ENSACIG00000015982	polr2a	74	91.061	ENSUMAG00000015732	-	79	91.061	Ursus_maritimus
ENSACIG00000015982	polr2a	61	97.826	ENSVPAG00000008842	-	76	97.826	Vicugna_pacos
ENSACIG00000015982	polr2a	81	92.427	ENSVVUG00000027878	-	83	91.816	Vulpes_vulpes
ENSACIG00000015982	polr2a	80	92.070	ENSXETG00000012465	polr2a	82	92.080	Xenopus_tropicalis
ENSACIG00000015982	polr2a	96	97.917	ENSXCOG00000001804	polr2a	100	97.917	Xiphophorus_couchianus
ENSACIG00000015982	polr2a	100	98.755	ENSXMAG00000015687	polr2a	100	98.755	Xiphophorus_maculatus