EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000016116 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 952 bases
Position: chrCCOE01000273.1:23691-24642
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000020819	RRM_1	PF00076.22	1.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000021361	-	531	-	ENSACIP00000020819	176 (aa)	-	-

Gene Model

Click here to download ENSACIG00000016116's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000016116's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000016116	cirbpa	66	38.889	ENSACIG00000000511	-	71	38.889
ENSACIG00000016116	cirbpa	56	33.673	ENSACIG00000020091	-	66	30.263

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000016116	cirbpa	70	87.218	ENSAPOG00000004458	cirbpa	100	70.918	Acanthochromis_polyacanthus
ENSACIG00000016116	cirbpa	100	72.727	ENSAOCG00000016212	cirbpa	100	75.269	Amphiprion_ocellaris
ENSACIG00000016116	cirbpa	100	70.213	ENSAPEG00000011989	cirbpa	99	74.317	Amphiprion_percula
ENSACIG00000016116	cirbpa	100	81.081	ENSATEG00000014985	cirbpa	99	86.740	Anabas_testudineus
ENSACIG00000016116	cirbpa	100	97.159	ENSACLG00000002094	-	100	97.159	Astatotilapia_calliptera
ENSACIG00000016116	cirbpa	100	51.456	ENSAMXG00000015612	cirbpb	82	59.322	Astyanax_mexicanus
ENSACIG00000016116	cirbpa	100	63.452	ENSCSEG00000014344	cirbpa	100	63.452	Cynoglossus_semilaevis
ENSACIG00000016116	cirbpa	100	75.401	ENSCVAG00000004853	cirbpa	99	79.781	Cyprinodon_variegatus
ENSACIG00000016116	cirbpa	89	58.929	ENSDARG00000013351	cirbpb	92	58.173	Danio_rerio
ENSACIG00000016116	cirbpa	98	58.378	ENSDARG00000103672	cirbpa	98	58.152	Danio_rerio
ENSACIG00000016116	cirbpa	78	56.522	ENSELUG00000004675	-	100	53.125	Esox_lucius
ENSACIG00000016116	cirbpa	99	79.330	ENSFHEG00000002580	cirbpa	100	84.181	Fundulus_heteroclitus
ENSACIG00000016116	cirbpa	99	76.882	ENSGAFG00000008654	cirbpa	100	75.936	Gambusia_affinis
ENSACIG00000016116	cirbpa	100	62.694	ENSGACG00000015206	cirbpa	100	61.856	Gasterosteus_aculeatus
ENSACIG00000016116	cirbpa	100	58.152	ENSGACG00000014978	-	51	88.372	Gasterosteus_aculeatus
ENSACIG00000016116	cirbpa	100	87.978	ENSHBUG00000022060	cirbpa	99	91.061	Haplochromis_burtoni
ENSACIG00000016116	cirbpa	98	82.759	ENSKMAG00000005905	cirbpa	99	81.714	Kryptolebias_marmoratus
ENSACIG00000016116	cirbpa	61	79.817	ENSLBEG00000027731	-	66	83.951	Labrus_bergylta
ENSACIG00000016116	cirbpa	100	67.045	ENSLBEG00000000292	cirbpa	100	67.045	Labrus_bergylta
ENSACIG00000016116	cirbpa	100	83.152	ENSMAMG00000010168	cirbpa	100	85.870	Mastacembelus_armatus
ENSACIG00000016116	cirbpa	100	87.978	ENSMZEG00005025577	-	99	91.061	Maylandia_zebra
ENSACIG00000016116	cirbpa	98	86.667	ENSMALG00000020092	cirbpa	99	84.444	Monopterus_albus
ENSACIG00000016116	cirbpa	100	87.978	ENSNBRG00000019658	cirbpa	99	91.061	Neolamprologus_brichardi
ENSACIG00000016116	cirbpa	100	98.864	ENSONIG00000010169	cirbpa	100	98.864	Oreochromis_niloticus
ENSACIG00000016116	cirbpa	100	83.146	ENSORLG00000015433	cirbpa	100	88.202	Oryzias_latipes
ENSACIG00000016116	cirbpa	100	83.146	ENSORLG00020016909	cirbpa	100	88.202	Oryzias_latipes_hni
ENSACIG00000016116	cirbpa	100	83.146	ENSORLG00015016636	cirbpa	100	88.202	Oryzias_latipes_hsok
ENSACIG00000016116	cirbpa	100	85.311	ENSOMEG00000021469	cirbpa	72	90.751	Oryzias_melastigma
ENSACIG00000016116	cirbpa	99	73.118	ENSPMGG00000017342	cirbpa	95	70.968	Periophthalmus_magnuspinnatus
ENSACIG00000016116	cirbpa	100	78.836	ENSPFOG00000015653	cirbpa	100	80.000	Poecilia_formosa
ENSACIG00000016116	cirbpa	99	79.679	ENSPLAG00000011125	cirbpa	100	80.000	Poecilia_latipinna
ENSACIG00000016116	cirbpa	100	79.255	ENSPMEG00000013878	cirbpa	100	80.000	Poecilia_mexicana
ENSACIG00000016116	cirbpa	99	85.326	ENSPREG00000018042	cirbpa	98	82.609	Poecilia_reticulata
ENSACIG00000016116	cirbpa	100	87.978	ENSPNYG00000007198	-	100	89.617	Pundamilia_nyererei
ENSACIG00000016116	cirbpa	100	56.650	ENSPNAG00000019997	cirbpb	100	55.665	Pygocentrus_nattereri
ENSACIG00000016116	cirbpa	100	55.851	ENSSFOG00015005346	cirbpb	100	61.170	Scleropages_formosus
ENSACIG00000016116	cirbpa	100	77.273	ENSSDUG00000016099	cirbpa	100	70.718	Seriola_dumerili
ENSACIG00000016116	cirbpa	100	78.090	ENSSPAG00000023037	cirbpa	99	72.067	Stegastes_partitus
ENSACIG00000016116	cirbpa	100	74.432	ENSTRUG00000010187	cirbpa	99	75.581	Takifugu_rubripes
ENSACIG00000016116	cirbpa	100	72.131	ENSTNIG00000000450	cirbpa	100	74.863	Tetraodon_nigroviridis
ENSACIG00000016116	cirbpa	99	85.326	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSACIG00000016116	cirbpa	100	83.784	ENSXMAG00000019336	cirbpa	100	81.081	Xiphophorus_maculatus