EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000017861 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 8909 bases
Position: chrCCOE01001287.1:1649308-1658216
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000023006	PPR	PF01535.20	1.1e-14	1	2
ENSACIP00000023006	PPR	PF01535.20	1.1e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000023615	-	2010	-	ENSACIP00000023006	669 (aa)	-	-

Gene Model

Click here to download ENSACIG00000017861's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000017861's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000017861	ptcd1	85	48.264	ENSG00000106246	PTCD1	85	48.350	Homo_sapiens
ENSACIG00000017861	ptcd1	85	48.264	ENSG00000248919	ATP5MF-PTCD1	79	48.350	Homo_sapiens
ENSACIG00000017861	ptcd1	86	72.109	ENSAPOG00000010679	ptcd1	90	72.109	Acanthochromis_polyacanthus
ENSACIG00000017861	ptcd1	90	49.762	ENSAMEG00000006224	-	83	49.762	Ailuropoda_melanoleuca
ENSACIG00000017861	ptcd1	91	70.429	ENSAOCG00000022617	ptcd1	93	70.429	Amphiprion_ocellaris
ENSACIG00000017861	ptcd1	97	70.827	ENSAOCG00000020741	-	93	70.827	Amphiprion_ocellaris
ENSACIG00000017861	ptcd1	97	70.827	ENSAPEG00000022632	ptcd1	93	70.827	Amphiprion_percula
ENSACIG00000017861	ptcd1	98	72.836	ENSATEG00000007016	ptcd1	94	72.985	Anabas_testudineus
ENSACIG00000017861	ptcd1	84	50.169	ENSAPLG00000006862	-	91	50.169	Anas_platyrhynchos
ENSACIG00000017861	ptcd1	90	48.265	ENSACAG00000012871	-	83	48.265	Anolis_carolinensis
ENSACIG00000017861	ptcd1	85	48.276	ENSANAG00000035790	-	87	48.361	Aotus_nancymaae
ENSACIG00000017861	ptcd1	97	83.358	ENSACLG00000002824	ptcd1	93	83.358	Astatotilapia_calliptera
ENSACIG00000017861	ptcd1	84	53.028	ENSAMXG00000037292	ptcd1	85	53.191	Astyanax_mexicanus
ENSACIG00000017861	ptcd1	87	48.889	ENSBTAG00000020440	-	76	49.123	Bos_taurus
ENSACIG00000017861	ptcd1	85	48.675	ENSCJAG00000015815	-	85	48.760	Callithrix_jacchus
ENSACIG00000017861	ptcd1	92	47.846	ENSCAFG00000015055	-	85	47.846	Canis_familiaris
ENSACIG00000017861	ptcd1	92	47.846	ENSCAFG00020014480	-	85	47.846	Canis_lupus_dingo
ENSACIG00000017861	ptcd1	87	50.000	ENSCHIG00000027000	-	87	50.000	Capra_hircus
ENSACIG00000017861	ptcd1	86	48.693	ENSTSYG00000029495	-	90	48.200	Carlito_syrichta
ENSACIG00000017861	ptcd1	88	48.006	ENSCAPG00000014660	-	94	48.006	Cavia_aperea
ENSACIG00000017861	ptcd1	90	48.276	ENSCPOG00000001780	-	89	48.276	Cavia_porcellus
ENSACIG00000017861	ptcd1	85	48.684	ENSCCAG00000034025	-	92	46.472	Cebus_capucinus
ENSACIG00000017861	ptcd1	83	49.493	ENSCATG00000040859	-	83	49.578	Cercocebus_atys
ENSACIG00000017861	ptcd1	92	47.859	ENSCLAG00000006354	-	91	48.012	Chinchilla_lanigera
ENSACIG00000017861	ptcd1	79	48.404	ENSCSAG00000017794	-	82	48.673	Chlorocebus_sabaeus
ENSACIG00000017861	ptcd1	93	44.718	ENSCPBG00000020866	-	93	44.718	Chrysemys_picta_bellii
ENSACIG00000017861	ptcd1	76	30.331	ENSCING00000007717	-	92	30.331	Ciona_intestinalis
ENSACIG00000017861	ptcd1	86	48.515	ENSCANG00000023441	-	85	49.175	Colobus_angolensis_palliatus
ENSACIG00000017861	ptcd1	93	47.576	ENSCGRG00001023686	Ptcd1	93	48.182	Cricetulus_griseus_chok1gshd
ENSACIG00000017861	ptcd1	92	47.766	ENSCGRG00000015031	Ptcd1	91	48.382	Cricetulus_griseus_crigri
ENSACIG00000017861	ptcd1	89	63.875	ENSCSEG00000002378	ptcd1	86	63.875	Cynoglossus_semilaevis
ENSACIG00000017861	ptcd1	97	71.429	ENSCVAG00000015826	ptcd1	92	71.429	Cyprinodon_variegatus
ENSACIG00000017861	ptcd1	97	70.713	ENSCVAG00000003621	ptcd1	98	70.713	Cyprinodon_variegatus
ENSACIG00000017861	ptcd1	84	54.746	ENSDARG00000076176	ptcd1	85	54.746	Danio_rerio
ENSACIG00000017861	ptcd1	86	48.689	ENSDNOG00000009957	-	86	48.697	Dasypus_novemcinctus
ENSACIG00000017861	ptcd1	87	49.038	ENSDORG00000000740	Ptcd1	90	49.038	Dipodomys_ordii
ENSACIG00000017861	ptcd1	83	38.658	ENSEBUG00000014515	ptcd1	93	38.628	Eptatretus_burgeri
ENSACIG00000017861	ptcd1	94	47.833	ENSEASG00005002480	-	91	48.120	Equus_asinus_asinus
ENSACIG00000017861	ptcd1	94	47.982	ENSECAG00000016617	-	89	49.530	Equus_caballus
ENSACIG00000017861	ptcd1	98	54.558	ENSELUG00000016517	ptcd1	95	54.558	Esox_lucius
ENSACIG00000017861	ptcd1	86	48.929	ENSFCAG00000015069	-	85	49.423	Felis_catus
ENSACIG00000017861	ptcd1	85	47.317	ENSFALG00000013803	-	92	45.427	Ficedula_albicollis
ENSACIG00000017861	ptcd1	88	48.947	ENSFDAG00000006393	-	87	49.271	Fukomys_damarensis
ENSACIG00000017861	ptcd1	74	75.490	ENSFHEG00000012491	ptcd1	89	75.490	Fundulus_heteroclitus
ENSACIG00000017861	ptcd1	84	64.249	ENSGMOG00000007639	ptcd1	92	64.249	Gadus_morhua
ENSACIG00000017861	ptcd1	84	48.052	ENSGALG00000004711	-	84	47.967	Gallus_gallus
ENSACIG00000017861	ptcd1	87	71.189	ENSGAFG00000013175	ptcd1	86	70.792	Gambusia_affinis
ENSACIG00000017861	ptcd1	85	73.973	ENSGACG00000016607	ptcd1	91	73.973	Gasterosteus_aculeatus
ENSACIG00000017861	ptcd1	92	44.060	ENSGAGG00000021832	-	98	43.446	Gopherus_agassizii
ENSACIG00000017861	ptcd1	85	48.264	ENSGGOG00000015123	-	85	48.350	Gorilla_gorilla
ENSACIG00000017861	ptcd1	97	83.788	ENSHBUG00000018275	ptcd1	92	83.788	Haplochromis_burtoni
ENSACIG00000017861	ptcd1	88	48.166	ENSHGLG00000017621	-	88	48.804	Heterocephalus_glaber_female
ENSACIG00000017861	ptcd1	88	48.166	ENSHGLG00100007218	-	88	48.804	Heterocephalus_glaber_male
ENSACIG00000017861	ptcd1	97	59.517	ENSHCOG00000010784	ptcd1	94	60.181	Hippocampus_comes
ENSACIG00000017861	ptcd1	87	49.919	ENSSTOG00000001682	-	89	49.289	Ictidomys_tridecemlineatus
ENSACIG00000017861	ptcd1	85	50.664	ENSJJAG00000000319	Ptcd1	86	50.582	Jaculus_jaculus
ENSACIG00000017861	ptcd1	95	69.565	ENSKMAG00000008708	ptcd1	94	69.565	Kryptolebias_marmoratus
ENSACIG00000017861	ptcd1	97	70.030	ENSLBEG00000008061	ptcd1	93	70.623	Labrus_bergylta
ENSACIG00000017861	ptcd1	83	49.490	ENSLACG00000011172	ptcd1	82	49.490	Latimeria_chalumnae
ENSACIG00000017861	ptcd1	88	49.615	ENSLOCG00000004833	ptcd1	97	49.522	Lepisosteus_oculatus
ENSACIG00000017861	ptcd1	87	48.882	ENSLAFG00000002588	-	87	48.882	Loxodonta_africana
ENSACIG00000017861	ptcd1	83	49.662	ENSMFAG00000041324	-	83	49.747	Macaca_fascicularis
ENSACIG00000017861	ptcd1	85	48.760	ENSMMUG00000030408	-	83	49.578	Macaca_mulatta
ENSACIG00000017861	ptcd1	83	49.831	ENSMNEG00000043786	-	83	49.916	Macaca_nemestrina
ENSACIG00000017861	ptcd1	83	37.522	ENSMLEG00000031179	-	81	40.592	Mandrillus_leucophaeus
ENSACIG00000017861	ptcd1	97	71.342	ENSMAMG00000007623	ptcd1	92	71.342	Mastacembelus_armatus
ENSACIG00000017861	ptcd1	97	83.358	ENSMZEG00005012722	ptcd1	93	83.358	Maylandia_zebra
ENSACIG00000017861	ptcd1	88	48.346	ENSMGAG00000004211	-	81	48.661	Meleagris_gallopavo
ENSACIG00000017861	ptcd1	92	46.390	ENSMICG00000017428	-	89	46.522	Microcebus_murinus
ENSACIG00000017861	ptcd1	98	71.134	ENSMMOG00000020243	ptcd1	94	74.551	Mola_mola
ENSACIG00000017861	ptcd1	86	46.688	ENSMODG00000001350	-	83	46.688	Monodelphis_domestica
ENSACIG00000017861	ptcd1	97	72.239	ENSMALG00000018442	ptcd1	92	72.239	Monopterus_albus
ENSACIG00000017861	ptcd1	88	49.029	MGP_CAROLIEiJ_G0028011	Ptcd1	88	49.676	Mus_caroli
ENSACIG00000017861	ptcd1	88	48.875	ENSMUSG00000029624	Ptcd1	88	49.678	Mus_musculus
ENSACIG00000017861	ptcd1	88	49.201	MGP_PahariEiJ_G0024580	Ptcd1	88	49.361	Mus_pahari
ENSACIG00000017861	ptcd1	88	48.714	MGP_SPRETEiJ_G0029012	Ptcd1	88	49.518	Mus_spretus
ENSACIG00000017861	ptcd1	91	48.986	ENSMPUG00000016518	-	90	48.830	Mustela_putorius_furo
ENSACIG00000017861	ptcd1	90	50.238	ENSMLUG00000010994	-	85	49.242	Myotis_lucifugus
ENSACIG00000017861	ptcd1	97	84.404	ENSNBRG00000010079	ptcd1	99	80.438	Neolamprologus_brichardi
ENSACIG00000017861	ptcd1	75	48.134	ENSNLEG00000011060	-	90	48.134	Nomascus_leucogenys
ENSACIG00000017861	ptcd1	87	47.011	ENSMEUG00000006930	-	87	47.011	Notamacropus_eugenii
ENSACIG00000017861	ptcd1	76	61.207	ENSOPRG00000013647	-	75	61.207	Ochotona_princeps
ENSACIG00000017861	ptcd1	85	82.118	ENSONIG00000003168	ptcd1	96	82.118	Oreochromis_niloticus
ENSACIG00000017861	ptcd1	79	47.153	ENSOANG00000007728	-	73	47.153	Ornithorhynchus_anatinus
ENSACIG00000017861	ptcd1	83	50.085	ENSOCUG00000010584	-	81	50.084	Oryctolagus_cuniculus
ENSACIG00000017861	ptcd1	97	69.138	ENSORLG00000009275	ptcd1	95	69.138	Oryzias_latipes
ENSACIG00000017861	ptcd1	97	69.545	ENSORLG00020000988	ptcd1	95	69.545	Oryzias_latipes_hni
ENSACIG00000017861	ptcd1	97	69.242	ENSORLG00015010557	ptcd1	95	69.242	Oryzias_latipes_hsok
ENSACIG00000017861	ptcd1	97	69.697	ENSOMEG00000020627	ptcd1	96	69.697	Oryzias_melastigma
ENSACIG00000017861	ptcd1	83	48.080	ENSOGAG00000010877	-	87	47.650	Otolemur_garnettii
ENSACIG00000017861	ptcd1	87	46.463	ENSOARG00000018676	-	88	46.463	Ovis_aries
ENSACIG00000017861	ptcd1	85	47.934	ENSPPAG00000036024	-	85	48.020	Pan_paniscus
ENSACIG00000017861	ptcd1	86	49.259	ENSPPRG00000003478	-	86	49.259	Panthera_pardus
ENSACIG00000017861	ptcd1	85	48.099	ENSPTRG00000019452	-	85	48.185	Pan_troglodytes
ENSACIG00000017861	ptcd1	83	49.831	ENSPANG00000016730	-	83	49.916	Papio_anubis
ENSACIG00000017861	ptcd1	92	49.192	ENSPKIG00000014215	ptcd1	94	49.486	Paramormyrops_kingsleyae
ENSACIG00000017861	ptcd1	85	47.236	ENSPSIG00000011184	-	99	47.236	Pelodiscus_sinensis
ENSACIG00000017861	ptcd1	72	41.346	ENSPMAG00000009667	ptcd1	100	41.346	Petromyzon_marinus
ENSACIG00000017861	ptcd1	86	47.488	ENSPCIG00000024778	-	85	46.855	Phascolarctos_cinereus
ENSACIG00000017861	ptcd1	90	70.161	ENSPFOG00000004458	ptcd1	87	70.161	Poecilia_formosa
ENSACIG00000017861	ptcd1	90	70.340	ENSPLAG00000011051	ptcd1	88	70.275	Poecilia_latipinna
ENSACIG00000017861	ptcd1	90	70.161	ENSPMEG00000020547	ptcd1	87	70.161	Poecilia_mexicana
ENSACIG00000017861	ptcd1	89	70.213	ENSPREG00000000059	ptcd1	89	69.378	Poecilia_reticulata
ENSACIG00000017861	ptcd1	86	47.855	ENSPPYG00000017377	-	90	47.855	Pongo_abelii
ENSACIG00000017861	ptcd1	77	59.055	ENSPCAG00000001852	-	83	59.055	Procavia_capensis
ENSACIG00000017861	ptcd1	91	46.677	ENSPCOG00000018596	-	89	47.040	Propithecus_coquereli
ENSACIG00000017861	ptcd1	62	53.681	ENSPVAG00000007529	-	62	53.681	Pteropus_vampyrus
ENSACIG00000017861	ptcd1	97	83.485	ENSPNYG00000019993	ptcd1	92	83.485	Pundamilia_nyererei
ENSACIG00000017861	ptcd1	91	51.698	ENSPNAG00000014931	ptcd1	96	50.517	Pygocentrus_nattereri
ENSACIG00000017861	ptcd1	90	48.259	ENSRNOG00000000987	Ptcd1	91	48.418	Rattus_norvegicus
ENSACIG00000017861	ptcd1	86	48.680	ENSRBIG00000043393	-	85	49.340	Rhinopithecus_bieti
ENSACIG00000017861	ptcd1	86	48.933	ENSRROG00000036420	-	85	49.589	Rhinopithecus_roxellana
ENSACIG00000017861	ptcd1	85	48.595	ENSSBOG00000024114	-	85	48.680	Saimiri_boliviensis_boliviensis
ENSACIG00000017861	ptcd1	87	46.569	ENSSHAG00000011376	-	92	46.569	Sarcophilus_harrisii
ENSACIG00000017861	ptcd1	87	53.301	ENSSFOG00015007909	ptcd1	83	53.301	Scleropages_formosus
ENSACIG00000017861	ptcd1	85	72.318	ENSSMAG00000000218	ptcd1	92	72.712	Scophthalmus_maximus
ENSACIG00000017861	ptcd1	97	75.610	ENSSDUG00000015671	ptcd1	96	75.610	Seriola_dumerili
ENSACIG00000017861	ptcd1	98	74.057	ENSSLDG00000014261	ptcd1	97	74.057	Seriola_lalandi_dorsalis
ENSACIG00000017861	ptcd1	86	46.552	ENSSPUG00000003540	-	85	46.708	Sphenodon_punctatus
ENSACIG00000017861	ptcd1	97	74.963	ENSSPAG00000011049	ptcd1	92	74.963	Stegastes_partitus
ENSACIG00000017861	ptcd1	85	49.333	ENSSSCG00000007622	-	97	47.032	Sus_scrofa
ENSACIG00000017861	ptcd1	85	46.990	ENSTGUG00000007563	-	97	47.826	Taeniopygia_guttata
ENSACIG00000017861	ptcd1	98	65.430	ENSTRUG00000013471	ptcd1	93	65.430	Takifugu_rubripes
ENSACIG00000017861	ptcd1	98	65.030	ENSTNIG00000008271	ptcd1	97	65.030	Tetraodon_nigroviridis
ENSACIG00000017861	ptcd1	86	48.613	ENSTBEG00000011021	-	86	48.613	Tupaia_belangeri
ENSACIG00000017861	ptcd1	89	48.107	ENSTTRG00000003006	-	90	48.107	Tursiops_truncatus
ENSACIG00000017861	ptcd1	84	50.424	ENSUAMG00000008049	-	83	50.764	Ursus_americanus
ENSACIG00000017861	ptcd1	92	47.994	ENSVVUG00000008836	-	91	47.994	Vulpes_vulpes
ENSACIG00000017861	ptcd1	88	46.252	ENSXETG00000009891	ptcd1	90	46.252	Xenopus_tropicalis
ENSACIG00000017861	ptcd1	87	71.933	ENSXMAG00000015540	ptcd1	86	71.287	Xiphophorus_maculatus