EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000018078 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 15320 bases
Position: chrCCOE01001161.1:161228-176547
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000023301	Upf2	PF04050.14	9.3e-32	1	1
ENSACIP00000023301	MIF4G	PF02854.19	1.7e-76	1	3
ENSACIP00000023301	MIF4G	PF02854.19	1.7e-76	2	3
ENSACIP00000023301	MIF4G	PF02854.19	1.7e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000023915	UPF2-201	3822	-	ENSACIP00000023301	1273 (aa)	-	-

Gene Model

Click here to download ENSACIG00000018078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000018078's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000018078	UPF2	100	82.358	ENSG00000151461	UPF2	99	82.436	Homo_sapiens
ENSACIG00000018078	UPF2	100	90.838	ENSAPOG00000015837	UPF2	100	90.831	Acanthochromis_polyacanthus
ENSACIG00000018078	UPF2	100	82.891	ENSAMEG00000004586	UPF2	99	82.969	Ailuropoda_melanoleuca
ENSACIG00000018078	UPF2	100	97.257	ENSAOCG00000016766	UPF2	99	97.257	Amphiprion_ocellaris
ENSACIG00000018078	UPF2	100	97.257	ENSAPEG00000019084	UPF2	99	97.257	Amphiprion_percula
ENSACIG00000018078	UPF2	100	96.552	ENSATEG00000021677	UPF2	99	96.552	Anabas_testudineus
ENSACIG00000018078	UPF2	100	79.082	ENSAPLG00000010287	UPF2	90	83.665	Anas_platyrhynchos
ENSACIG00000018078	UPF2	100	82.812	ENSACAG00000009259	UPF2	99	82.891	Anolis_carolinensis
ENSACIG00000018078	UPF2	91	79.006	ENSANAG00000028451	UPF2	93	79.078	Aotus_nancymaae
ENSACIG00000018078	UPF2	100	98.350	ENSACLG00000012696	UPF2	99	98.350	Astatotilapia_calliptera
ENSACIG00000018078	UPF2	100	89.054	ENSAMXG00000013700	UPF2	99	88.976	Astyanax_mexicanus
ENSACIG00000018078	UPF2	100	82.812	ENSBTAG00000000288	UPF2	99	83.047	Bos_taurus
ENSACIG00000018078	UPF2	100	82.031	ENSCJAG00000020685	UPF2	99	81.641	Callithrix_jacchus
ENSACIG00000018078	UPF2	100	82.891	ENSCAFG00000004839	UPF2	99	82.969	Canis_familiaris
ENSACIG00000018078	UPF2	95	87.245	ENSCAFG00020005882	UPF2	99	87.755	Canis_lupus_dingo
ENSACIG00000018078	UPF2	100	82.969	ENSCHIG00000020359	UPF2	99	83.047	Capra_hircus
ENSACIG00000018078	UPF2	100	82.578	ENSTSYG00000000935	UPF2	97	86.932	Carlito_syrichta
ENSACIG00000018078	UPF2	91	75.086	ENSCAPG00000016658	UPF2	95	74.744	Cavia_aperea
ENSACIG00000018078	UPF2	99	80.031	ENSCPOG00000008809	UPF2	100	80.110	Cavia_porcellus
ENSACIG00000018078	UPF2	100	75.781	ENSCCAG00000035991	UPF2	99	75.469	Cebus_capucinus
ENSACIG00000018078	UPF2	100	82.514	ENSCATG00000032679	UPF2	99	82.592	Cercocebus_atys
ENSACIG00000018078	UPF2	100	81.861	ENSCLAG00000011434	UPF2	99	81.939	Chinchilla_lanigera
ENSACIG00000018078	UPF2	100	82.514	ENSCSAG00000013372	UPF2	99	82.592	Chlorocebus_sabaeus
ENSACIG00000018078	UPF2	79	88.914	ENSCHOG00000000422	UPF2	81	88.914	Choloepus_hoffmanni
ENSACIG00000018078	UPF2	100	81.548	ENSCPBG00000027823	UPF2	100	81.157	Chrysemys_picta_bellii
ENSACIG00000018078	UPF2	79	50.049	ENSCSAVG00000007772	-	99	48.924	Ciona_savignyi
ENSACIG00000018078	UPF2	100	77.382	ENSCANG00000040396	UPF2	100	77.769	Colobus_angolensis_palliatus
ENSACIG00000018078	UPF2	100	82.174	ENSCGRG00001019347	Upf2	99	82.252	Cricetulus_griseus_chok1gshd
ENSACIG00000018078	UPF2	100	82.174	ENSCGRG00000017993	Upf2	99	82.252	Cricetulus_griseus_crigri
ENSACIG00000018078	UPF2	99	85.759	ENSCSEG00000003520	UPF2	99	85.456	Cynoglossus_semilaevis
ENSACIG00000018078	UPF2	99	94.155	ENSCVAG00000006167	UPF2	100	93.602	Cyprinodon_variegatus
ENSACIG00000018078	UPF2	100	82.656	ENSDNOG00000018160	UPF2	99	82.734	Dasypus_novemcinctus
ENSACIG00000018078	UPF2	100	82.500	ENSDORG00000002478	Upf2	99	82.656	Dipodomys_ordii
ENSACIG00000018078	UPF2	73	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSACIG00000018078	UPF2	64	72.483	ENSEBUG00000012448	-	93	68.460	Eptatretus_burgeri
ENSACIG00000018078	UPF2	100	82.095	ENSEASG00005019274	UPF2	99	82.174	Equus_asinus_asinus
ENSACIG00000018078	UPF2	100	82.095	ENSECAG00000017022	UPF2	99	82.174	Equus_caballus
ENSACIG00000018078	UPF2	82	74.921	ENSEEUG00000007819	UPF2	74	75.281	Erinaceus_europaeus
ENSACIG00000018078	UPF2	100	88.759	ENSELUG00000012014	UPF2	99	89.227	Esox_lucius
ENSACIG00000018078	UPF2	100	86.034	ENSFCAG00000005785	UPF2	99	82.812	Felis_catus
ENSACIG00000018078	UPF2	100	83.750	ENSFALG00000001889	UPF2	98	83.750	Ficedula_albicollis
ENSACIG00000018078	UPF2	100	81.548	ENSFDAG00000014348	UPF2	99	81.392	Fukomys_damarensis
ENSACIG00000018078	UPF2	99	94.392	ENSFHEG00000009826	UPF2	99	93.997	Fundulus_heteroclitus
ENSACIG00000018078	UPF2	91	89.888	ENSGMOG00000005557	UPF2	100	88.290	Gadus_morhua
ENSACIG00000018078	UPF2	100	83.997	ENSGALG00000033772	UPF2	99	83.763	Gallus_gallus
ENSACIG00000018078	UPF2	100	93.809	ENSGAFG00000020867	UPF2	99	93.417	Gambusia_affinis
ENSACIG00000018078	UPF2	100	92.974	ENSGACG00000001080	UPF2	100	94.223	Gasterosteus_aculeatus
ENSACIG00000018078	UPF2	100	82.592	ENSGAGG00000002700	UPF2	99	82.279	Gopherus_agassizii
ENSACIG00000018078	UPF2	100	82.358	ENSGGOG00000001479	UPF2	99	82.436	Gorilla_gorilla
ENSACIG00000018078	UPF2	100	98.507	ENSHBUG00000004249	UPF2	100	98.507	Haplochromis_burtoni
ENSACIG00000018078	UPF2	100	81.626	ENSHGLG00000015176	-	99	81.704	Heterocephalus_glaber_female
ENSACIG00000018078	UPF2	100	72.905	ENSHGLG00000003822	-	99	72.984	Heterocephalus_glaber_female
ENSACIG00000018078	UPF2	100	79.359	ENSHGLG00100010036	UPF2	100	79.359	Heterocephalus_glaber_male
ENSACIG00000018078	UPF2	100	91.335	ENSHCOG00000004025	UPF2	99	91.257	Hippocampus_comes
ENSACIG00000018078	UPF2	100	87.978	ENSIPUG00000015524	UPF2	99	85.859	Ictalurus_punctatus
ENSACIG00000018078	UPF2	100	82.656	ENSSTOG00000013075	UPF2	99	82.734	Ictidomys_tridecemlineatus
ENSACIG00000018078	UPF2	100	79.593	ENSJJAG00000004913	Upf2	99	82.031	Jaculus_jaculus
ENSACIG00000018078	UPF2	99	94.550	ENSKMAG00000001071	UPF2	99	94.550	Kryptolebias_marmoratus
ENSACIG00000018078	UPF2	80	92.654	ENSLBEG00000000728	-	94	92.564	Labrus_bergylta
ENSACIG00000018078	UPF2	100	95.455	ENSLBEG00000016394	-	99	95.455	Labrus_bergylta
ENSACIG00000018078	UPF2	99	77.301	ENSLACG00000015945	UPF2	100	77.535	Latimeria_chalumnae
ENSACIG00000018078	UPF2	99	88.249	ENSLOCG00000015698	UPF2	99	87.934	Lepisosteus_oculatus
ENSACIG00000018078	UPF2	100	82.514	ENSMFAG00000043865	UPF2	99	82.592	Macaca_fascicularis
ENSACIG00000018078	UPF2	100	82.514	ENSMMUG00000008241	UPF2	99	82.592	Macaca_mulatta
ENSACIG00000018078	UPF2	80	83.236	ENSMNEG00000008062	UPF2	99	83.138	Macaca_nemestrina
ENSACIG00000018078	UPF2	100	80.499	ENSMLEG00000036120	UPF2	100	80.484	Mandrillus_leucophaeus
ENSACIG00000018078	UPF2	100	96.787	ENSMAMG00000018276	UPF2	99	96.787	Mastacembelus_armatus
ENSACIG00000018078	UPF2	100	98.350	ENSMZEG00005021595	UPF2	99	98.350	Maylandia_zebra
ENSACIG00000018078	UPF2	99	83.608	ENSMGAG00000004573	UPF2	99	83.373	Meleagris_gallopavo
ENSACIG00000018078	UPF2	100	80.141	ENSMAUG00000016512	Upf2	99	80.219	Mesocricetus_auratus
ENSACIG00000018078	UPF2	95	86.735	ENSMICG00000001716	UPF2	99	87.245	Microcebus_murinus
ENSACIG00000018078	UPF2	100	81.299	ENSMOCG00000008263	Upf2	99	81.455	Microtus_ochrogaster
ENSACIG00000018078	UPF2	100	89.263	ENSMMOG00000006528	UPF2	100	89.107	Mola_mola
ENSACIG00000018078	UPF2	100	81.094	ENSMODG00000016794	UPF2	99	83.281	Monodelphis_domestica
ENSACIG00000018078	UPF2	100	94.749	ENSMALG00000002663	UPF2	100	94.749	Monopterus_albus
ENSACIG00000018078	UPF2	100	82.017	MGP_CAROLIEiJ_G0023157	Upf2	99	84.495	Mus_caroli
ENSACIG00000018078	UPF2	100	82.330	ENSMUSG00000043241	Upf2	99	83.712	Mus_musculus
ENSACIG00000018078	UPF2	100	82.408	MGP_PahariEiJ_G0019217	Upf2	99	83.712	Mus_pahari
ENSACIG00000018078	UPF2	100	82.565	MGP_SPRETEiJ_G0024075	Upf2	99	83.712	Mus_spretus
ENSACIG00000018078	UPF2	100	82.734	ENSMPUG00000001064	UPF2	99	82.812	Mustela_putorius_furo
ENSACIG00000018078	UPF2	100	81.995	ENSMLUG00000000228	UPF2	100	82.179	Myotis_lucifugus
ENSACIG00000018078	UPF2	100	98.507	ENSNBRG00000013629	UPF2	99	98.507	Neolamprologus_brichardi
ENSACIG00000018078	UPF2	100	82.436	ENSNLEG00000012058	UPF2	99	82.514	Nomascus_leucogenys
ENSACIG00000018078	UPF2	72	94.366	ENSOPRG00000006801	-	73	94.366	Ochotona_princeps
ENSACIG00000018078	UPF2	100	81.704	ENSODEG00000001290	UPF2	99	81.626	Octodon_degus
ENSACIG00000018078	UPF2	100	98.115	ENSONIG00000017991	UPF2	99	98.115	Oreochromis_niloticus
ENSACIG00000018078	UPF2	100	81.479	ENSOCUG00000006230	UPF2	100	80.700	Oryctolagus_cuniculus
ENSACIG00000018078	UPF2	100	92.639	ENSORLG00000017189	UPF2	99	92.796	Oryzias_latipes
ENSACIG00000018078	UPF2	100	92.717	ENSORLG00020005969	UPF2	99	92.874	Oryzias_latipes_hni
ENSACIG00000018078	UPF2	100	92.717	ENSORLG00015005713	UPF2	99	92.874	Oryzias_latipes_hsok
ENSACIG00000018078	UPF2	100	89.734	ENSOMEG00000023420	UPF2	98	89.734	Oryzias_melastigma
ENSACIG00000018078	UPF2	100	82.969	ENSOGAG00000005796	UPF2	99	82.500	Otolemur_garnettii
ENSACIG00000018078	UPF2	100	82.839	ENSOARG00000014587	UPF2	99	82.917	Ovis_aries
ENSACIG00000018078	UPF2	100	79.875	ENSPPAG00000037953	UPF2	100	79.859	Pan_paniscus
ENSACIG00000018078	UPF2	100	82.734	ENSPPRG00000000690	UPF2	99	82.812	Panthera_pardus
ENSACIG00000018078	UPF2	100	82.734	ENSPTIG00000008867	UPF2	99	82.812	Panthera_tigris_altaica
ENSACIG00000018078	UPF2	100	82.358	ENSPTRG00000002291	UPF2	99	82.436	Pan_troglodytes
ENSACIG00000018078	UPF2	100	82.514	ENSPANG00000023399	UPF2	99	82.592	Papio_anubis
ENSACIG00000018078	UPF2	100	88.272	ENSPKIG00000025502	UPF2	99	86.865	Paramormyrops_kingsleyae
ENSACIG00000018078	UPF2	59	81.316	ENSPSIG00000015158	UPF2	95	81.184	Pelodiscus_sinensis
ENSACIG00000018078	UPF2	100	90.204	ENSPMGG00000005259	UPF2	100	90.204	Periophthalmus_magnuspinnatus
ENSACIG00000018078	UPF2	93	76.081	ENSPEMG00000015731	Upf2	99	76.081	Peromyscus_maniculatus_bairdii
ENSACIG00000018078	UPF2	100	83.125	ENSPCIG00000006656	UPF2	100	83.047	Phascolarctos_cinereus
ENSACIG00000018078	UPF2	100	94.044	ENSPFOG00000017118	UPF2	99	93.652	Poecilia_formosa
ENSACIG00000018078	UPF2	100	94.044	ENSPLAG00000005094	UPF2	99	93.652	Poecilia_latipinna
ENSACIG00000018078	UPF2	100	93.966	ENSPMEG00000017009	UPF2	99	93.574	Poecilia_mexicana
ENSACIG00000018078	UPF2	100	92.163	ENSPREG00000021880	UPF2	100	92.163	Poecilia_reticulata
ENSACIG00000018078	UPF2	66	84.899	ENSPPYG00000002089	-	99	85.137	Pongo_abelii
ENSACIG00000018078	UPF2	100	70.547	ENSPCAG00000000684	UPF2	99	70.469	Procavia_capensis
ENSACIG00000018078	UPF2	100	80.000	ENSPCOG00000021656	UPF2	100	80.312	Propithecus_coquereli
ENSACIG00000018078	UPF2	100	76.269	ENSPVAG00000017286	UPF2	99	76.347	Pteropus_vampyrus
ENSACIG00000018078	UPF2	100	95.915	ENSPNYG00000017096	UPF2	100	95.915	Pundamilia_nyererei
ENSACIG00000018078	UPF2	100	89.461	ENSPNAG00000009357	UPF2	99	89.696	Pygocentrus_nattereri
ENSACIG00000018078	UPF2	100	78.521	ENSRNOG00000023593	Upf2	98	94.318	Rattus_norvegicus
ENSACIG00000018078	UPF2	100	81.328	ENSRBIG00000037780	UPF2	100	81.328	Rhinopithecus_bieti
ENSACIG00000018078	UPF2	100	82.279	ENSRROG00000043547	UPF2	99	82.279	Rhinopithecus_roxellana
ENSACIG00000018078	UPF2	100	81.875	ENSSBOG00000020012	UPF2	99	81.406	Saimiri_boliviensis_boliviensis
ENSACIG00000018078	UPF2	100	87.177	ENSSFOG00015023788	upf2	100	86.599	Scleropages_formosus
ENSACIG00000018078	UPF2	90	92.114	ENSSMAG00000007637	UPF2	100	92.003	Scophthalmus_maximus
ENSACIG00000018078	UPF2	100	96.708	ENSSDUG00000017244	UPF2	99	96.708	Seriola_dumerili
ENSACIG00000018078	UPF2	100	93.260	ENSSLDG00000016866	UPF2	100	92.868	Seriola_lalandi_dorsalis
ENSACIG00000018078	UPF2	100	81.499	ENSSARG00000008615	UPF2	99	81.733	Sorex_araneus
ENSACIG00000018078	UPF2	100	80.781	ENSSPUG00000014544	UPF2	99	80.625	Sphenodon_punctatus
ENSACIG00000018078	UPF2	68	84.765	ENSSSCG00000011117	-	99	84.994	Sus_scrofa
ENSACIG00000018078	UPF2	99	83.346	ENSTGUG00000002163	-	100	83.503	Taeniopygia_guttata
ENSACIG00000018078	UPF2	100	93.887	ENSTRUG00000007519	UPF2	99	93.887	Takifugu_rubripes
ENSACIG00000018078	UPF2	100	90.219	ENSTNIG00000004453	UPF2	99	89.750	Tetraodon_nigroviridis
ENSACIG00000018078	UPF2	93	74.413	ENSTBEG00000012679	UPF2	93	75.168	Tupaia_belangeri
ENSACIG00000018078	UPF2	100	81.783	ENSTTRG00000016388	UPF2	99	81.861	Tursiops_truncatus
ENSACIG00000018078	UPF2	87	94.382	ENSUAMG00000023560	UPF2	98	94.382	Ursus_americanus
ENSACIG00000018078	UPF2	100	82.969	ENSUMAG00000012953	UPF2	95	83.047	Ursus_maritimus
ENSACIG00000018078	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSACIG00000018078	UPF2	100	82.891	ENSVVUG00000006166	UPF2	99	82.969	Vulpes_vulpes
ENSACIG00000018078	UPF2	100	79.813	ENSXETG00000033103	UPF2	91	84.569	Xenopus_tropicalis
ENSACIG00000018078	UPF2	100	93.966	ENSXCOG00000011604	UPF2	100	93.574	Xiphophorus_couchianus
ENSACIG00000018078	UPF2	100	94.122	ENSXMAG00000017209	UPF2	99	93.730	Xiphophorus_maculatus