EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000018210 (Gene tree)
Gene ID: -
Gene Symbol: zgc:110796
Alias: cb676|msi1
Full Name: zgc:110796
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 1252 bases
Position: chrCCOE01001359.1:155519-156770
Accession: ZDB-GENE-050306-36
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000023441	RRM_1	PF00076.22	6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000024056	-	267	-	ENSACIP00000023441	89 (aa)	-	-

Gene Model

Click here to download ENSACIG00000018210's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000018210's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000018210	zgc:110796	78	30.986	ENSACIG00000012502	-	61	30.986
ENSACIG00000018210	zgc:110796	88	42.857	ENSACIG00000020389	HNRNPA1P48	57	45.714
ENSACIG00000018210	zgc:110796	76	38.571	ENSACIG00000021834	HNRNPA0	62	38.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000018210	zgc:110796	98	82.609	ENSAPOG00000003191	MSI1	50	65.000	Acanthochromis_polyacanthus
ENSACIG00000018210	zgc:110796	98	82.609	ENSACLG00000011230	MSI1	77	83.516	Astatotilapia_calliptera
ENSACIG00000018210	zgc:110796	98	77.778	ENSCSAG00000002265	MSI1	55	77.778	Chlorocebus_sabaeus
ENSACIG00000018210	zgc:110796	97	83.516	ENSCVAG00000017430	zgc:110796	66	83.516	Cyprinodon_variegatus
ENSACIG00000018210	zgc:110796	100	84.043	ENSDARG00000041299	zgc:110796	100	86.170	Danio_rerio
ENSACIG00000018210	zgc:110796	98	92.222	ENSGACG00000012679	MSI1	50	92.222	Gasterosteus_aculeatus
ENSACIG00000018210	zgc:110796	97	94.382	ENSKMAG00000011251	MSI1	53	94.382	Kryptolebias_marmoratus
ENSACIG00000018210	zgc:110796	97	87.640	ENSLOCG00000008618	zgc:110796	57	87.640	Lepisosteus_oculatus
ENSACIG00000018210	zgc:110796	76	84.286	ENSMAUG00000016820	Msi1	58	84.286	Mesocricetus_auratus
ENSACIG00000018210	zgc:110796	100	84.043	ENSNBRG00000018002	zgc:110796	100	84.043	Neolamprologus_brichardi
ENSACIG00000018210	zgc:110796	75	81.159	ENSPSIG00000016295	-	56	81.159	Pelodiscus_sinensis
ENSACIG00000018210	zgc:110796	100	80.851	ENSPREG00000020265	zgc:110796	81	80.851	Poecilia_reticulata
ENSACIG00000018210	zgc:110796	98	73.000	ENSSPAG00000015573	zgc:110796	51	73.000	Stegastes_partitus
ENSACIG00000018210	zgc:110796	100	95.652	ENSTRUG00000021586	-	94	95.652	Takifugu_rubripes