EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000018309 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 4289 bases
Position: chrCCOE01001022.1:296624-300912
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000023561	RNA_ligase	PF09414.10	2.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000024178	-	2733	-	ENSACIP00000023561	910 (aa)	-	-

Gene Model

Click here to download ENSACIG00000018309's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000018309's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000018309	lig4	99	66.997	ENSG00000174405	LIG4	99	67.260	Homo_sapiens
ENSACIG00000018309	lig4	99	92.079	ENSAPOG00000000866	lig4	100	91.978	Acanthochromis_polyacanthus
ENSACIG00000018309	lig4	99	64.442	ENSAMEG00000019685	LIG4	99	64.114	Ailuropoda_melanoleuca
ENSACIG00000018309	lig4	99	91.969	ENSAOCG00000011768	lig4	100	91.868	Amphiprion_ocellaris
ENSACIG00000018309	lig4	100	92.088	ENSAPEG00000017815	lig4	100	92.088	Amphiprion_percula
ENSACIG00000018309	lig4	99	89.648	ENSATEG00000005583	lig4	99	89.648	Anabas_testudineus
ENSACIG00000018309	lig4	96	67.123	ENSAPLG00000001673	LIG4	99	67.123	Anas_platyrhynchos
ENSACIG00000018309	lig4	99	67.849	ENSACAG00000014566	LIG4	99	67.849	Anolis_carolinensis
ENSACIG00000018309	lig4	99	66.227	ENSANAG00000012446	LIG4	99	66.007	Aotus_nancymaae
ENSACIG00000018309	lig4	100	93.077	ENSACLG00000027051	lig4	100	93.077	Astatotilapia_calliptera
ENSACIG00000018309	lig4	99	80.349	ENSAMXG00000008192	lig4	95	80.349	Astyanax_mexicanus
ENSACIG00000018309	lig4	99	65.824	ENSBTAG00000015868	LIG4	99	65.604	Bos_taurus
ENSACIG00000018309	lig4	99	66.007	ENSCJAG00000014689	LIG4	99	65.787	Callithrix_jacchus
ENSACIG00000018309	lig4	99	65.275	ENSCAFG00000006031	LIG4	99	65.055	Canis_familiaris
ENSACIG00000018309	lig4	99	65.275	ENSCAFG00020021230	LIG4	99	65.055	Canis_lupus_dingo
ENSACIG00000018309	lig4	99	65.824	ENSCHIG00000001019	LIG4	99	65.604	Capra_hircus
ENSACIG00000018309	lig4	98	65.743	ENSCAPG00000006284	LIG4	99	65.521	Cavia_aperea
ENSACIG00000018309	lig4	99	65.567	ENSCPOG00000014266	LIG4	99	65.347	Cavia_porcellus
ENSACIG00000018309	lig4	99	66.337	ENSCCAG00000019971	LIG4	99	66.117	Cebus_capucinus
ENSACIG00000018309	lig4	99	66.337	ENSCATG00000021075	LIG4	99	66.117	Cercocebus_atys
ENSACIG00000018309	lig4	99	66.117	ENSCLAG00000003376	LIG4	99	65.897	Chinchilla_lanigera
ENSACIG00000018309	lig4	98	66.408	ENSCSAG00000000211	LIG4	99	66.186	Chlorocebus_sabaeus
ENSACIG00000018309	lig4	98	69.556	ENSCPBG00000023291	LIG4	99	69.003	Chrysemys_picta_bellii
ENSACIG00000018309	lig4	69	47.484	ENSCING00000009536	-	97	47.484	Ciona_intestinalis
ENSACIG00000018309	lig4	83	44.868	ENSCSAVG00000010336	-	98	44.868	Ciona_savignyi
ENSACIG00000018309	lig4	98	66.186	ENSCANG00000005805	LIG4	99	65.965	Colobus_angolensis_palliatus
ENSACIG00000018309	lig4	99	65.824	ENSCGRG00001012072	Lig4	99	65.824	Cricetulus_griseus_chok1gshd
ENSACIG00000018309	lig4	99	65.824	ENSCGRG00000013417	Lig4	99	65.824	Cricetulus_griseus_crigri
ENSACIG00000018309	lig4	97	86.133	ENSCSEG00000013905	lig4	96	86.133	Cynoglossus_semilaevis
ENSACIG00000018309	lig4	100	89.133	ENSCVAG00000007896	lig4	100	89.133	Cyprinodon_variegatus
ENSACIG00000018309	lig4	99	80.308	ENSDARG00000060620	lig4	99	80.308	Danio_rerio
ENSACIG00000018309	lig4	99	65.824	ENSDNOG00000000513	LIG4	99	65.495	Dasypus_novemcinctus
ENSACIG00000018309	lig4	98	65.632	ENSDORG00000027303	Lig4	99	65.521	Dipodomys_ordii
ENSACIG00000018309	lig4	92	30.917	FBgn0030506	Lig4	93	30.917	Drosophila_melanogaster
ENSACIG00000018309	lig4	98	64.040	ENSETEG00000015563	LIG4	99	64.151	Echinops_telfairi
ENSACIG00000018309	lig4	99	44.932	ENSEBUG00000014243	lig4	99	44.723	Eptatretus_burgeri
ENSACIG00000018309	lig4	99	65.714	ENSEASG00005022073	LIG4	99	65.604	Equus_asinus_asinus
ENSACIG00000018309	lig4	99	65.714	ENSECAG00000003257	LIG4	99	65.604	Equus_caballus
ENSACIG00000018309	lig4	99	84.286	ENSELUG00000006787	lig4	99	84.396	Esox_lucius
ENSACIG00000018309	lig4	99	64.673	ENSFCAG00000031985	LIG4	99	64.341	Felis_catus
ENSACIG00000018309	lig4	87	69.925	ENSFALG00000004214	LIG4	97	69.925	Ficedula_albicollis
ENSACIG00000018309	lig4	99	65.457	ENSFDAG00000008973	LIG4	99	65.237	Fukomys_damarensis
ENSACIG00000018309	lig4	99	90.110	ENSFHEG00000007398	lig4	90	90.110	Fundulus_heteroclitus
ENSACIG00000018309	lig4	85	78.378	ENSGMOG00000012843	lig4	99	78.378	Gadus_morhua
ENSACIG00000018309	lig4	99	67.072	ENSGALG00000016854	LIG4	99	67.072	Gallus_gallus
ENSACIG00000018309	lig4	99	88.061	ENSGAFG00000019779	lig4	96	88.499	Gambusia_affinis
ENSACIG00000018309	lig4	99	84.862	ENSGACG00000014135	lig4	99	84.862	Gasterosteus_aculeatus
ENSACIG00000018309	lig4	99	66.777	ENSGGOG00000027771	LIG4	99	66.557	Gorilla_gorilla
ENSACIG00000018309	lig4	100	93.077	ENSHBUG00000006245	lig4	100	93.077	Haplochromis_burtoni
ENSACIG00000018309	lig4	99	65.749	ENSHGLG00000000718	LIG4	99	65.529	Heterocephalus_glaber_female
ENSACIG00000018309	lig4	99	65.749	ENSHGLG00100003265	LIG4	99	65.529	Heterocephalus_glaber_male
ENSACIG00000018309	lig4	99	82.656	ENSHCOG00000012010	lig4	99	82.656	Hippocampus_comes
ENSACIG00000018309	lig4	100	79.451	ENSIPUG00000013748	lig4	100	79.451	Ictalurus_punctatus
ENSACIG00000018309	lig4	99	65.897	ENSSTOG00000024303	LIG4	99	65.677	Ictidomys_tridecemlineatus
ENSACIG00000018309	lig4	99	65.787	ENSJJAG00000006750	Lig4	99	65.457	Jaculus_jaculus
ENSACIG00000018309	lig4	99	85.809	ENSKMAG00000001149	lig4	99	85.809	Kryptolebias_marmoratus
ENSACIG00000018309	lig4	91	89.091	ENSLBEG00000014578	lig4	99	89.091	Labrus_bergylta
ENSACIG00000018309	lig4	99	68.277	ENSLACG00000003282	LIG4	99	68.277	Latimeria_chalumnae
ENSACIG00000018309	lig4	99	73.355	ENSLOCG00000008901	lig4	99	73.355	Lepisosteus_oculatus
ENSACIG00000018309	lig4	99	64.356	ENSLAFG00000031152	LIG4	99	64.246	Loxodonta_africana
ENSACIG00000018309	lig4	98	66.519	ENSMFAG00000037235	LIG4	99	66.297	Macaca_fascicularis
ENSACIG00000018309	lig4	98	66.297	ENSMMUG00000008874	LIG4	99	66.075	Macaca_mulatta
ENSACIG00000018309	lig4	98	66.519	ENSMNEG00000023575	LIG4	99	66.297	Macaca_nemestrina
ENSACIG00000018309	lig4	98	66.297	ENSMLEG00000026720	LIG4	99	66.075	Mandrillus_leucophaeus
ENSACIG00000018309	lig4	100	90.220	ENSMAMG00000008472	lig4	99	90.220	Mastacembelus_armatus
ENSACIG00000018309	lig4	100	93.077	ENSMZEG00005001855	lig4	100	93.077	Maylandia_zebra
ENSACIG00000018309	lig4	99	66.520	ENSMGAG00000015532	LIG4	99	66.520	Meleagris_gallopavo
ENSACIG00000018309	lig4	99	64.641	ENSMOCG00000019000	Lig4	99	64.641	Microtus_ochrogaster
ENSACIG00000018309	lig4	100	87.802	ENSMMOG00000004390	lig4	100	87.802	Mola_mola
ENSACIG00000018309	lig4	99	67.033	ENSMODG00000025064	LIG4	99	66.923	Monodelphis_domestica
ENSACIG00000018309	lig4	100	89.231	ENSMALG00000008555	lig4	100	89.231	Monopterus_albus
ENSACIG00000018309	lig4	99	65.787	MGP_CAROLIEiJ_G0030809	Lig4	99	65.677	Mus_caroli
ENSACIG00000018309	lig4	99	65.567	ENSMUSG00000049717	Lig4	99	65.457	Mus_musculus
ENSACIG00000018309	lig4	99	65.567	MGP_PahariEiJ_G0021270	Lig4	99	65.567	Mus_pahari
ENSACIG00000018309	lig4	99	65.787	MGP_SPRETEiJ_G0031917	Lig4	99	65.677	Mus_spretus
ENSACIG00000018309	lig4	99	64.758	ENSMPUG00000018675	LIG4	99	64.427	Mustela_putorius_furo
ENSACIG00000018309	lig4	99	66.264	ENSMLUG00000001267	LIG4	99	66.044	Myotis_lucifugus
ENSACIG00000018309	lig4	99	66.410	ENSNGAG00000013258	Lig4	99	66.300	Nannospalax_galili
ENSACIG00000018309	lig4	100	93.297	ENSNBRG00000021252	lig4	100	93.297	Neolamprologus_brichardi
ENSACIG00000018309	lig4	99	66.007	ENSNLEG00000007888	LIG4	99	65.787	Nomascus_leucogenys
ENSACIG00000018309	lig4	98	64.856	ENSOPRG00000005765	LIG4	99	64.745	Ochotona_princeps
ENSACIG00000018309	lig4	99	65.270	ENSODEG00000019683	LIG4	99	65.050	Octodon_degus
ENSACIG00000018309	lig4	100	93.626	ENSONIG00000011969	lig4	99	93.626	Oreochromis_niloticus
ENSACIG00000018309	lig4	99	65.677	ENSOCUG00000015734	LIG4	99	65.567	Oryctolagus_cuniculus
ENSACIG00000018309	lig4	99	85.401	ENSORLG00000004041	lig4	99	85.401	Oryzias_latipes
ENSACIG00000018309	lig4	99	85.291	ENSORLG00020019607	lig4	99	85.291	Oryzias_latipes_hni
ENSACIG00000018309	lig4	99	85.181	ENSORLG00015017754	lig4	99	85.181	Oryzias_latipes_hsok
ENSACIG00000018309	lig4	75	89.229	ENSOMEG00000003459	lig4	99	89.229	Oryzias_melastigma
ENSACIG00000018309	lig4	99	66.484	ENSOGAG00000032120	LIG4	99	66.374	Otolemur_garnettii
ENSACIG00000018309	lig4	81	70.161	ENSOARG00000005590	LIG4	98	70.161	Ovis_aries
ENSACIG00000018309	lig4	99	66.777	ENSPPAG00000032998	LIG4	99	66.557	Pan_paniscus
ENSACIG00000018309	lig4	99	65.227	ENSPPRG00000017804	LIG4	99	64.895	Panthera_pardus
ENSACIG00000018309	lig4	99	65.116	ENSPTIG00000010051	LIG4	99	64.784	Panthera_tigris_altaica
ENSACIG00000018309	lig4	99	66.887	ENSPTRG00000006025	LIG4	99	66.667	Pan_troglodytes
ENSACIG00000018309	lig4	99	66.447	ENSPANG00000007562	LIG4	99	66.227	Papio_anubis
ENSACIG00000018309	lig4	99	78.801	ENSPKIG00000011645	lig4	98	78.801	Paramormyrops_kingsleyae
ENSACIG00000018309	lig4	99	69.214	ENSPSIG00000001504	LIG4	99	68.992	Pelodiscus_sinensis
ENSACIG00000018309	lig4	98	81.971	ENSPMGG00000013486	lig4	99	81.298	Periophthalmus_magnuspinnatus
ENSACIG00000018309	lig4	99	64.945	ENSPEMG00000000076	Lig4	99	64.835	Peromyscus_maniculatus_bairdii
ENSACIG00000018309	lig4	99	66.264	ENSPCIG00000021882	LIG4	99	66.154	Phascolarctos_cinereus
ENSACIG00000018309	lig4	98	90.157	ENSPFOG00000000797	lig4	99	89.462	Poecilia_formosa
ENSACIG00000018309	lig4	98	90.045	ENSPLAG00000001196	lig4	99	89.352	Poecilia_latipinna
ENSACIG00000018309	lig4	98	90.045	ENSPMEG00000021353	lig4	99	89.462	Poecilia_mexicana
ENSACIG00000018309	lig4	98	89.262	ENSPREG00000007323	lig4	99	88.694	Poecilia_reticulata
ENSACIG00000018309	lig4	99	66.117	ENSPPYG00000005540	LIG4	99	65.897	Pongo_abelii
ENSACIG00000018309	lig4	99	65.227	ENSPVAG00000016403	LIG4	99	64.790	Pteropus_vampyrus
ENSACIG00000018309	lig4	100	92.967	ENSPNYG00000009660	lig4	100	92.967	Pundamilia_nyererei
ENSACIG00000018309	lig4	98	82.143	ENSPNAG00000028056	lig4	99	82.143	Pygocentrus_nattereri
ENSACIG00000018309	lig4	98	82.143	ENSPNAG00000028069	LIG4	99	82.143	Pygocentrus_nattereri
ENSACIG00000018309	lig4	99	65.347	ENSRNOG00000014605	Lig4	99	65.237	Rattus_norvegicus
ENSACIG00000018309	lig4	98	65.743	ENSRBIG00000039962	LIG4	99	65.521	Rhinopithecus_bieti
ENSACIG00000018309	lig4	98	66.408	ENSRROG00000006040	LIG4	99	66.186	Rhinopithecus_roxellana
ENSACIG00000018309	lig4	99	66.007	ENSSBOG00000019029	LIG4	99	65.787	Saimiri_boliviensis_boliviensis
ENSACIG00000018309	lig4	99	63.846	ENSSHAG00000009525	LIG4	99	63.736	Sarcophilus_harrisii
ENSACIG00000018309	lig4	100	79.451	ENSSFOG00015012835	lig4	100	79.451	Scleropages_formosus
ENSACIG00000018309	lig4	100	84.505	ENSSMAG00000011267	lig4	100	84.505	Scophthalmus_maximus
ENSACIG00000018309	lig4	100	88.512	ENSSDUG00000010343	lig4	99	88.828	Seriola_dumerili
ENSACIG00000018309	lig4	100	87.527	ENSSLDG00000003239	lig4	99	87.623	Seriola_lalandi_dorsalis
ENSACIG00000018309	lig4	99	64.537	ENSSARG00000006573	LIG4	99	64.317	Sorex_araneus
ENSACIG00000018309	lig4	92	70.083	ENSSPUG00000002444	LIG4	99	69.964	Sphenodon_punctatus
ENSACIG00000018309	lig4	99	91.749	ENSSPAG00000001609	lig4	99	91.749	Stegastes_partitus
ENSACIG00000018309	lig4	99	65.932	ENSSSCG00000009540	LIG4	99	65.601	Sus_scrofa
ENSACIG00000018309	lig4	99	66.961	ENSTGUG00000010795	LIG4	99	66.961	Taeniopygia_guttata
ENSACIG00000018309	lig4	99	86.689	ENSTRUG00000009984	lig4	99	86.689	Takifugu_rubripes
ENSACIG00000018309	lig4	99	83.058	ENSTNIG00000010348	lig4	99	83.278	Tetraodon_nigroviridis
ENSACIG00000018309	lig4	99	66.557	ENSTBEG00000017741	LIG4	99	66.557	Tupaia_belangeri
ENSACIG00000018309	lig4	99	65.347	ENSTTRG00000012660	LIG4	99	65.127	Tursiops_truncatus
ENSACIG00000018309	lig4	99	64.537	ENSUAMG00000003773	LIG4	99	64.207	Ursus_americanus
ENSACIG00000018309	lig4	99	67.728	ENSXETG00000002654	lig4	99	67.728	Xenopus_tropicalis
ENSACIG00000018309	lig4	98	89.709	ENSXCOG00000017401	lig4	99	89.023	Xiphophorus_couchianus
ENSACIG00000018309	lig4	100	89.035	ENSXMAG00000015142	lig4	99	89.572	Xiphophorus_maculatus