EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000018455 (Gene tree)
Gene ID: -
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 6341 bases
Position: chrCCOE01001698.1:1100649-1106989
Accession: ZDB-GENE-020419-22
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000023767	RRM_1	PF00076.22	5.2e-36	1	2
ENSACIP00000023767	RRM_1	PF00076.22	5.2e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000024389	-	1011	-	ENSACIP00000023767	336 (aa)	-	-

Gene Model

Click here to download ENSACIG00000018455's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000018455's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000018455	sf3b4	51	32.278	ENSACIG00000018226	elavl1a	91	32.099
ENSACIG00000018455	sf3b4	50	36.095	ENSACIG00000003734	tial1	83	36.095
ENSACIG00000018455	sf3b4	53	40.437	ENSACIG00000023343	pabpc4	57	40.437
ENSACIG00000018455	sf3b4	53	37.705	ENSACIG00000018366	pabpc1b	58	37.705
ENSACIG00000018455	sf3b4	54	38.251	ENSACIG00000004685	pabpc1a	57	38.251
ENSACIG00000018455	sf3b4	53	32.065	ENSACIG00000024190	elavl3	93	31.492
ENSACIG00000018455	sf3b4	53	37.647	ENSACIG00000000511	-	96	30.994
ENSACIG00000018455	sf3b4	54	34.884	ENSACIG00000008793	elavl4	92	30.899
ENSACIG00000018455	sf3b4	53	34.591	ENSACIG00000014376	-	69	34.591
ENSACIG00000018455	sf3b4	54	36.957	ENSACIG00000021004	-	70	36.095
ENSACIG00000018455	sf3b4	52	35.294	ENSACIG00000010855	ELAVL2	98	30.994

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000018455	sf3b4	67	96.930	ENSG00000143368	SF3B4	99	95.745	Homo_sapiens
ENSACIG00000018455	sf3b4	68	97.826	ENSAPOG00000017647	sf3b4	70	84.342	Acanthochromis_polyacanthus
ENSACIG00000018455	sf3b4	67	98.673	ENSAOCG00000019801	sf3b4	70	83.986	Amphiprion_ocellaris
ENSACIG00000018455	sf3b4	67	98.673	ENSAPEG00000010365	sf3b4	70	83.986	Amphiprion_percula
ENSACIG00000018455	sf3b4	63	99.065	ENSACAG00000010019	SF3B4	58	80.496	Anolis_carolinensis
ENSACIG00000018455	sf3b4	70	98.734	ENSACLG00000014260	sf3b4	69	86.691	Astatotilapia_calliptera
ENSACIG00000018455	sf3b4	66	78.571	WBGene00004723	sap-49	55	80.751	Caenorhabditis_elegans
ENSACIG00000018455	sf3b4	67	96.053	ENSCCAG00000021751	-	52	95.238	Cebus_capucinus
ENSACIG00000018455	sf3b4	64	86.047	ENSCCAG00000019823	-	55	80.603	Cebus_capucinus
ENSACIG00000018455	sf3b4	60	91.429	ENSCSAVG00000007809	-	89	89.222	Ciona_savignyi
ENSACIG00000018455	sf3b4	70	95.781	ENSCVAG00000005536	sf3b4	73	82.517	Cyprinodon_variegatus
ENSACIG00000018455	sf3b4	68	97.391	ENSDARG00000018574	sf3b4	58	97.403	Danio_rerio
ENSACIG00000018455	sf3b4	65	85.520	FBgn0015818	Spx	61	87.324	Drosophila_melanogaster
ENSACIG00000018455	sf3b4	68	98.261	ENSELUG00000012876	sf3b4	57	97.835	Esox_lucius
ENSACIG00000018455	sf3b4	78	92.395	ENSGMOG00000002519	sf3b4	67	96.957	Gadus_morhua
ENSACIG00000018455	sf3b4	63	99.065	ENSGALG00000013352	SF3B4	55	96.537	Gallus_gallus
ENSACIG00000018455	sf3b4	63	99.065	ENSGAGG00000025055	SF3B4	54	89.189	Gopherus_agassizii
ENSACIG00000018455	sf3b4	70	98.734	ENSHBUG00000002028	sf3b4	69	86.691	Haplochromis_burtoni
ENSACIG00000018455	sf3b4	67	96.476	ENSHCOG00000003014	sf3b4	58	95.671	Hippocampus_comes
ENSACIG00000018455	sf3b4	68	97.826	ENSIPUG00000012242	Sf3b4	58	97.835	Ictalurus_punctatus
ENSACIG00000018455	sf3b4	66	71.111	ENSJJAG00000022500	Sf3b4	55	70.290	Jaculus_jaculus
ENSACIG00000018455	sf3b4	70	98.312	ENSKMAG00000008154	sf3b4	59	98.701	Kryptolebias_marmoratus
ENSACIG00000018455	sf3b4	69	96.996	ENSLBEG00000026818	sf3b4	58	97.403	Labrus_bergylta
ENSACIG00000018455	sf3b4	68	98.253	ENSLOCG00000009048	sf3b4	61	90.347	Lepisosteus_oculatus
ENSACIG00000018455	sf3b4	67	96.930	ENSLAFG00000008531	SF3B4	54	96.104	Loxodonta_africana
ENSACIG00000018455	sf3b4	95	60.819	ENSMFAG00000039067	-	58	77.982	Macaca_fascicularis
ENSACIG00000018455	sf3b4	95	60.526	ENSMNEG00000031526	-	58	77.523	Macaca_nemestrina
ENSACIG00000018455	sf3b4	70	98.734	ENSMZEG00005026741	sf3b4	69	86.691	Maylandia_zebra
ENSACIG00000018455	sf3b4	63	99.065	ENSMGAG00000000653	SF3B4	56	96.537	Meleagris_gallopavo
ENSACIG00000018455	sf3b4	60	97.525	ENSMOCG00000014155	-	54	94.064	Microtus_ochrogaster
ENSACIG00000018455	sf3b4	67	99.115	ENSMALG00000006174	sf3b4	57	97.403	Monopterus_albus
ENSACIG00000018455	sf3b4	70	98.312	ENSNBRG00000013865	sf3b4	69	86.331	Neolamprologus_brichardi
ENSACIG00000018455	sf3b4	99	64.644	ENSNLEG00000000537	-	60	85.957	Nomascus_leucogenys
ENSACIG00000018455	sf3b4	67	79.913	ENSODEG00000003597	-	57	79.310	Octodon_degus
ENSACIG00000018455	sf3b4	70	70.763	ENSODEG00000008916	-	55	76.303	Octodon_degus
ENSACIG00000018455	sf3b4	70	98.312	ENSONIG00000002730	sf3b4	70	85.765	Oreochromis_niloticus
ENSACIG00000018455	sf3b4	67	78.541	ENSOANG00000004768	-	50	82.326	Ornithorhynchus_anatinus
ENSACIG00000018455	sf3b4	73	93.952	ENSORLG00000003062	sf3b4	61	82.624	Oryzias_latipes
ENSACIG00000018455	sf3b4	68	97.845	ENSORLG00020000687	sf3b4	61	82.624	Oryzias_latipes_hni
ENSACIG00000018455	sf3b4	68	97.845	ENSORLG00015010989	sf3b4	61	82.624	Oryzias_latipes_hsok
ENSACIG00000018455	sf3b4	68	97.414	ENSOMEG00000013694	sf3b4	58	97.835	Oryzias_melastigma
ENSACIG00000018455	sf3b4	69	78.970	ENSOARG00000007368	-	55	80.088	Ovis_aries
ENSACIG00000018455	sf3b4	80	78.909	ENSPPAG00000030024	-	71	72.569	Pan_paniscus
ENSACIG00000018455	sf3b4	86	74.183	ENSPTRG00000049727	-	58	86.147	Pan_troglodytes
ENSACIG00000018455	sf3b4	69	97.009	ENSPKIG00000020669	sf3b4	61	97.835	Paramormyrops_kingsleyae
ENSACIG00000018455	sf3b4	55	97.312	ENSPSIG00000009565	SF3B4	69	96.277	Pelodiscus_sinensis
ENSACIG00000018455	sf3b4	63	94.366	ENSPMAG00000007842	-	50	94.366	Petromyzon_marinus
ENSACIG00000018455	sf3b4	67	96.930	ENSPCIG00000008765	SF3B4	54	96.104	Phascolarctos_cinereus
ENSACIG00000018455	sf3b4	70	97.468	ENSPFOG00000005754	sf3b4	59	97.835	Poecilia_formosa
ENSACIG00000018455	sf3b4	83	86.525	ENSPLAG00000001401	sf3b4	64	97.835	Poecilia_latipinna
ENSACIG00000018455	sf3b4	61	96.154	ENSPCAG00000000392	SF3B4	50	96.154	Procavia_capensis
ENSACIG00000018455	sf3b4	70	98.734	ENSPNYG00000012700	sf3b4	69	86.691	Pundamilia_nyererei
ENSACIG00000018455	sf3b4	68	98.261	ENSPNAG00000000686	sf3b4	59	97.835	Pygocentrus_nattereri
ENSACIG00000018455	sf3b4	54	37.436	YOR319W	-	91	37.436	Saccharomyces_cerevisiae
ENSACIG00000018455	sf3b4	70	96.624	ENSSFOG00015008864	sf3b4	63	91.085	Scleropages_formosus
ENSACIG00000018455	sf3b4	67	98.673	ENSSMAG00000006837	sf3b4	60	97.059	Scophthalmus_maximus
ENSACIG00000018455	sf3b4	63	99.065	ENSSPUG00000001028	SF3B4	58	96.537	Sphenodon_punctatus
ENSACIG00000018455	sf3b4	68	97.826	ENSSPAG00000019219	sf3b4	70	83.746	Stegastes_partitus
ENSACIG00000018455	sf3b4	70	62.712	ENSSSCG00000039440	-	56	63.043	Sus_scrofa
ENSACIG00000018455	sf3b4	70	95.339	ENSTGUG00000004470	SF3B4	91	96.957	Taeniopygia_guttata
ENSACIG00000018455	sf3b4	67	96.930	ENSVVUG00000007732	-	59	96.104	Vulpes_vulpes
ENSACIG00000018455	sf3b4	69	91.416	ENSXETG00000011038	sf3b4	58	94.521	Xenopus_tropicalis