EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000018695 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 16773 bases
Position: chrCCOE01000439.1:43638-60410
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000024091	RRM_1	PF00076.22	1.1e-31	1	2
ENSACIP00000024091	RRM_1	PF00076.22	1.1e-31	2	2
ENSACIP00000024079	RRM_1	PF00076.22	1.2e-31	1	2
ENSACIP00000024079	RRM_1	PF00076.22	1.2e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000024715	-	1533	-	ENSACIP00000024079	510 (aa)	-	-
ENSACIT00000024727	-	1482	-	ENSACIP00000024091	493 (aa)	-	-

Gene Model

Click here to download ENSACIG00000018695's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000018695's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000018695	pspc1	86	50.664	ENSACIG00000000905	sfpq	73	48.148
ENSACIG00000018695	pspc1	84	50.000	ENSACIG00000019987	nono	100	46.139

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000018695	pspc1	87	59.660	ENSG00000121390	PSPC1	99	63.137	Homo_sapiens
ENSACIG00000018695	pspc1	100	77.969	ENSAPOG00000015946	pspc1	100	78.927	Acanthochromis_polyacanthus
ENSACIG00000018695	pspc1	87	59.660	ENSAMEG00000017420	PSPC1	88	62.208	Ailuropoda_melanoleuca
ENSACIG00000018695	pspc1	100	78.435	ENSAOCG00000005279	pspc1	100	79.198	Amphiprion_ocellaris
ENSACIG00000018695	pspc1	100	78.887	ENSAPEG00000015927	pspc1	100	79.846	Amphiprion_percula
ENSACIG00000018695	pspc1	100	79.497	ENSATEG00000004878	pspc1	100	79.691	Anabas_testudineus
ENSACIG00000018695	pspc1	62	63.208	ENSAPLG00000003643	SFPQ	88	48.795	Anas_platyrhynchos
ENSACIG00000018695	pspc1	75	57.005	ENSAPLG00000006246	PSPC1	100	59.420	Anas_platyrhynchos
ENSACIG00000018695	pspc1	88	57.773	ENSACAG00000002093	PSPC1	99	55.435	Anolis_carolinensis
ENSACIG00000018695	pspc1	100	58.301	ENSANAG00000000059	PSPC1	98	61.795	Aotus_nancymaae
ENSACIG00000018695	pspc1	100	85.714	ENSACLG00000027220	pspc1	100	85.913	Astatotilapia_calliptera
ENSACIG00000018695	pspc1	100	59.083	ENSAMXG00000036881	pspc1	100	61.922	Astyanax_mexicanus
ENSACIG00000018695	pspc1	100	58.095	ENSBTAG00000003934	PSPC1	99	59.048	Bos_taurus
ENSACIG00000018695	pspc1	100	58.462	ENSCJAG00000004554	PSPC1	99	59.693	Callithrix_jacchus
ENSACIG00000018695	pspc1	87	59.660	ENSCAFG00020002009	PSPC1	98	63.846	Canis_lupus_dingo
ENSACIG00000018695	pspc1	100	55.288	ENSCHIG00000016708	PSPC1	99	57.514	Capra_hircus
ENSACIG00000018695	pspc1	75	60.097	ENSTSYG00000032882	PSPC1	88	62.312	Carlito_syrichta
ENSACIG00000018695	pspc1	87	58.811	ENSCPOG00000000395	PSPC1	98	63.846	Cavia_porcellus
ENSACIG00000018695	pspc1	100	55.493	ENSCCAG00000033498	PSPC1	99	57.963	Cebus_capucinus
ENSACIG00000018695	pspc1	87	59.448	ENSCATG00000036434	PSPC1	90	71.914	Cercocebus_atys
ENSACIG00000018695	pspc1	76	56.532	ENSCLAG00000005241	PSPC1	92	58.199	Chinchilla_lanigera
ENSACIG00000018695	pspc1	91	56.287	ENSCHOG00000008913	PSPC1	99	57.514	Choloepus_hoffmanni
ENSACIG00000018695	pspc1	87	58.686	ENSCPBG00000020859	PSPC1	88	60.805	Chrysemys_picta_bellii
ENSACIG00000018695	pspc1	67	64.655	ENSCANG00000018948	PSPC1	87	72.727	Colobus_angolensis_palliatus
ENSACIG00000018695	pspc1	92	58.149	ENSCGRG00001018368	Pspc1	91	60.563	Cricetulus_griseus_chok1gshd
ENSACIG00000018695	pspc1	92	58.149	ENSCGRG00000011724	Pspc1	91	60.563	Cricetulus_griseus_crigri
ENSACIG00000018695	pspc1	100	73.981	ENSCVAG00000007679	-	100	75.146	Cyprinodon_variegatus
ENSACIG00000018695	pspc1	100	58.427	ENSDARG00000006621	pspc1	100	62.624	Danio_rerio
ENSACIG00000018695	pspc1	87	59.448	ENSDNOG00000011078	PSPC1	99	57.169	Dasypus_novemcinctus
ENSACIG00000018695	pspc1	100	53.148	ENSDORG00000016050	Pspc1	99	55.000	Dipodomys_ordii
ENSACIG00000018695	pspc1	57	44.805	ENSEBUG00000010133	pspc1	80	45.246	Eptatretus_burgeri
ENSACIG00000018695	pspc1	90	46.457	ENSEBUG00000003964	-	73	48.465	Eptatretus_burgeri
ENSACIG00000018695	pspc1	100	55.307	ENSEASG00005000119	PSPC1	98	64.103	Equus_asinus_asinus
ENSACIG00000018695	pspc1	100	55.307	ENSECAG00000017286	PSPC1	98	64.103	Equus_caballus
ENSACIG00000018695	pspc1	53	69.498	ENSEEUG00000011288	-	51	69.615	Erinaceus_europaeus
ENSACIG00000018695	pspc1	100	60.589	ENSELUG00000003746	pspc1	100	61.878	Esox_lucius
ENSACIG00000018695	pspc1	87	59.660	ENSFCAG00000027841	PSPC1	83	71.914	Felis_catus
ENSACIG00000018695	pspc1	99	53.918	ENSFALG00000008750	PSPC1	99	56.169	Ficedula_albicollis
ENSACIG00000018695	pspc1	91	57.959	ENSFDAG00000002617	PSPC1	94	60.612	Fukomys_damarensis
ENSACIG00000018695	pspc1	95	69.041	ENSGMOG00000015074	pspc1	84	72.673	Gadus_morhua
ENSACIG00000018695	pspc1	87	58.898	ENSGALG00000017142	PSPC1	88	61.229	Gallus_gallus
ENSACIG00000018695	pspc1	77	72.772	ENSGAFG00000006327	pspc1	86	72.222	Gambusia_affinis
ENSACIG00000018695	pspc1	100	66.475	ENSGACG00000014901	pspc1	97	75.862	Gasterosteus_aculeatus
ENSACIG00000018695	pspc1	87	58.686	ENSGAGG00000019164	PSPC1	88	60.805	Gopherus_agassizii
ENSACIG00000018695	pspc1	87	59.448	ENSGGOG00000003414	PSPC1	98	64.122	Gorilla_gorilla
ENSACIG00000018695	pspc1	100	82.659	ENSHBUG00000001139	pspc1	100	83.815	Haplochromis_burtoni
ENSACIG00000018695	pspc1	100	54.630	ENSHGLG00000018811	PSPC1	99	57.037	Heterocephalus_glaber_female
ENSACIG00000018695	pspc1	53	78.764	ENSHGLG00100007962	PSPC1	80	78.244	Heterocephalus_glaber_male
ENSACIG00000018695	pspc1	79	67.626	ENSHCOG00000013251	pspc1	99	65.924	Hippocampus_comes
ENSACIG00000018695	pspc1	100	61.842	ENSIPUG00000013192	pspc1	100	63.534	Ictalurus_punctatus
ENSACIG00000018695	pspc1	87	59.448	ENSSTOG00000026833	PSPC1	98	63.868	Ictidomys_tridecemlineatus
ENSACIG00000018695	pspc1	87	59.448	ENSJJAG00000018334	Pspc1	88	61.996	Jaculus_jaculus
ENSACIG00000018695	pspc1	100	65.996	ENSKMAG00000013525	-	100	65.191	Kryptolebias_marmoratus
ENSACIG00000018695	pspc1	98	73.465	ENSLBEG00000004474	pspc1	100	76.227	Labrus_bergylta
ENSACIG00000018695	pspc1	100	52.126	ENSLACG00000010762	PSPC1	100	56.007	Latimeria_chalumnae
ENSACIG00000018695	pspc1	100	59.519	ENSLOCG00000010832	pspc1	99	62.011	Lepisosteus_oculatus
ENSACIG00000018695	pspc1	78	62.295	ENSLAFG00000010968	PSPC1	88	61.996	Loxodonta_africana
ENSACIG00000018695	pspc1	87	59.448	ENSMFAG00000032728	PSPC1	91	71.914	Macaca_fascicularis
ENSACIG00000018695	pspc1	87	59.448	ENSMMUG00000020262	PSPC1	91	69.940	Macaca_mulatta
ENSACIG00000018695	pspc1	87	59.448	ENSMNEG00000027401	PSPC1	98	59.275	Macaca_nemestrina
ENSACIG00000018695	pspc1	74	57.946	ENSMLEG00000039043	PSPC1	94	60.880	Mandrillus_leucophaeus
ENSACIG00000018695	pspc1	100	76.275	ENSMAMG00000004333	pspc1	100	76.275	Mastacembelus_armatus
ENSACIG00000018695	pspc1	100	85.714	ENSMZEG00005005726	pspc1	100	85.913	Maylandia_zebra
ENSACIG00000018695	pspc1	75	56.971	ENSMGAG00000015134	PSPC1	100	59.615	Meleagris_gallopavo
ENSACIG00000018695	pspc1	79	64.096	ENSMAUG00000021067	Pspc1	89	63.855	Mesocricetus_auratus
ENSACIG00000018695	pspc1	87	60.722	ENSMICG00000013970	PSPC1	98	63.846	Microcebus_murinus
ENSACIG00000018695	pspc1	87	59.023	ENSMOCG00000006060	Pspc1	99	57.407	Microtus_ochrogaster
ENSACIG00000018695	pspc1	81	85.714	ENSMMOG00000004352	pspc1	72	85.714	Mola_mola
ENSACIG00000018695	pspc1	82	60.403	ENSMODG00000008029	PSPC1	71	61.969	Monodelphis_domestica
ENSACIG00000018695	pspc1	100	77.336	ENSMALG00000008914	pspc1	100	76.938	Monopterus_albus
ENSACIG00000018695	pspc1	87	58.898	MGP_CAROLIEiJ_G0019341	Pspc1	99	59.149	Mus_caroli
ENSACIG00000018695	pspc1	87	59.110	ENSMUSG00000021938	Pspc1	99	59.149	Mus_musculus
ENSACIG00000018695	pspc1	87	58.898	MGP_PahariEiJ_G0030359	Pspc1	99	59.149	Mus_pahari
ENSACIG00000018695	pspc1	87	59.110	MGP_SPRETEiJ_G0020232	Pspc1	99	59.149	Mus_spretus
ENSACIG00000018695	pspc1	87	59.660	ENSMPUG00000013347	PSPC1	88	62.208	Mustela_putorius_furo
ENSACIG00000018695	pspc1	87	58.650	ENSMLUG00000017663	PSPC1	89	61.181	Myotis_lucifugus
ENSACIG00000018695	pspc1	87	59.110	ENSNGAG00000011271	Pspc1	88	61.359	Nannospalax_galili
ENSACIG00000018695	pspc1	78	88.131	ENSNBRG00000014059	pspc1	95	88.384	Neolamprologus_brichardi
ENSACIG00000018695	pspc1	87	59.660	ENSNLEG00000001294	PSPC1	88	62.208	Nomascus_leucogenys
ENSACIG00000018695	pspc1	87	53.571	ENSODEG00000007817	-	92	55.289	Octodon_degus
ENSACIG00000018695	pspc1	87	56.394	ENSODEG00000019012	-	99	54.323	Octodon_degus
ENSACIG00000018695	pspc1	100	83.815	ENSONIG00000012010	pspc1	99	84.971	Oreochromis_niloticus
ENSACIG00000018695	pspc1	74	57.702	ENSOANG00000009017	-	100	60.147	Ornithorhynchus_anatinus
ENSACIG00000018695	pspc1	83	53.846	ENSOANG00000011381	-	98	49.592	Ornithorhynchus_anatinus
ENSACIG00000018695	pspc1	87	59.362	ENSOCUG00000006153	PSPC1	99	57.514	Oryctolagus_cuniculus
ENSACIG00000018695	pspc1	100	70.441	ENSORLG00000004232	-	100	70.817	Oryzias_latipes
ENSACIG00000018695	pspc1	100	71.012	ENSORLG00020000578	PSPC1	100	70.817	Oryzias_latipes_hni
ENSACIG00000018695	pspc1	100	70.633	ENSORLG00015017480	pspc1	100	71.012	Oryzias_latipes_hsok
ENSACIG00000018695	pspc1	87	59.660	ENSOGAG00000012643	PSPC1	99	57.778	Otolemur_garnettii
ENSACIG00000018695	pspc1	86	59.062	ENSOARG00000014163	PSPC1	95	61.834	Ovis_aries
ENSACIG00000018695	pspc1	87	62.389	ENSPPAG00000009836	PSPC1	92	72.086	Pan_paniscus
ENSACIG00000018695	pspc1	87	59.660	ENSPPRG00000008833	PSPC1	88	62.208	Panthera_pardus
ENSACIG00000018695	pspc1	74	57.946	ENSPTIG00000016917	PSPC1	84	60.880	Panthera_tigris_altaica
ENSACIG00000018695	pspc1	77	66.667	ENSPTRG00000005677	PSPC1	98	64.122	Pan_troglodytes
ENSACIG00000018695	pspc1	87	59.448	ENSPANG00000001992	PSPC1	89	71.914	Papio_anubis
ENSACIG00000018695	pspc1	100	59.134	ENSPKIG00000003578	pspc1	100	63.878	Paramormyrops_kingsleyae
ENSACIG00000018695	pspc1	99	53.271	ENSPSIG00000005168	PSPC1	91	58.776	Pelodiscus_sinensis
ENSACIG00000018695	pspc1	66	72.205	ENSPMGG00000015135	pspc1	91	72.205	Periophthalmus_magnuspinnatus
ENSACIG00000018695	pspc1	87	59.236	ENSPEMG00000015214	Pspc1	88	61.783	Peromyscus_maniculatus_bairdii
ENSACIG00000018695	pspc1	59	44.000	ENSPMAG00000004618	pspc1	91	44.000	Petromyzon_marinus
ENSACIG00000018695	pspc1	92	57.746	ENSPCIG00000017680	PSPC1	92	60.161	Phascolarctos_cinereus
ENSACIG00000018695	pspc1	99	72.115	ENSPFOG00000003362	pspc1	100	73.077	Poecilia_formosa
ENSACIG00000018695	pspc1	100	72.190	ENSPLAG00000011540	pspc1	100	73.143	Poecilia_latipinna
ENSACIG00000018695	pspc1	100	71.810	ENSPMEG00000008322	pspc1	100	72.762	Poecilia_mexicana
ENSACIG00000018695	pspc1	100	71.429	ENSPREG00000007786	pspc1	100	72.381	Poecilia_reticulata
ENSACIG00000018695	pspc1	87	59.236	ENSPPYG00000005186	PSPC1	99	56.697	Pongo_abelii
ENSACIG00000018695	pspc1	87	60.600	ENSPCOG00000014364	PSPC1	99	57.276	Propithecus_coquereli
ENSACIG00000018695	pspc1	87	59.322	ENSPVAG00000005036	PSPC1	99	56.983	Pteropus_vampyrus
ENSACIG00000018695	pspc1	100	86.111	ENSPNYG00000008893	pspc1	100	86.310	Pundamilia_nyererei
ENSACIG00000018695	pspc1	100	62.382	ENSPNAG00000016511	pspc1	100	64.717	Pygocentrus_nattereri
ENSACIG00000018695	pspc1	87	59.236	ENSRNOG00000020782	Pspc1	88	63.902	Rattus_norvegicus
ENSACIG00000018695	pspc1	87	59.660	ENSRBIG00000036057	PSPC1	91	71.914	Rhinopithecus_bieti
ENSACIG00000018695	pspc1	87	59.660	ENSRROG00000036334	PSPC1	98	63.868	Rhinopithecus_roxellana
ENSACIG00000018695	pspc1	77	59.406	ENSSBOG00000028172	PSPC1	89	71.481	Saimiri_boliviensis_boliviensis
ENSACIG00000018695	pspc1	92	56.262	ENSSHAG00000004696	PSPC1	91	59.920	Sarcophilus_harrisii
ENSACIG00000018695	pspc1	87	66.102	ENSSFOG00015001395	pspc1	99	68.547	Scleropages_formosus
ENSACIG00000018695	pspc1	100	74.765	ENSSMAG00000001761	pspc1	100	75.330	Scophthalmus_maximus
ENSACIG00000018695	pspc1	100	74.815	ENSSDUG00000010651	pspc1	100	77.407	Seriola_dumerili
ENSACIG00000018695	pspc1	100	78.812	ENSSLDG00000004284	pspc1	100	79.604	Seriola_lalandi_dorsalis
ENSACIG00000018695	pspc1	78	63.466	ENSSARG00000000888	PSPC1	99	57.169	Sorex_araneus
ENSACIG00000018695	pspc1	99	56.130	ENSSPUG00000008550	PSPC1	99	57.278	Sphenodon_punctatus
ENSACIG00000018695	pspc1	100	77.170	ENSSPAG00000001921	pspc1	100	78.113	Stegastes_partitus
ENSACIG00000018695	pspc1	87	59.448	ENSSSCG00000009569	PSPC1	99	64.631	Sus_scrofa
ENSACIG00000018695	pspc1	87	58.898	ENSTGUG00000011295	PSPC1	99	61.017	Taeniopygia_guttata
ENSACIG00000018695	pspc1	100	65.835	ENSTRUG00000011335	pspc1	100	67.245	Takifugu_rubripes
ENSACIG00000018695	pspc1	100	65.714	ENSTNIG00000010358	pspc1	100	67.823	Tetraodon_nigroviridis
ENSACIG00000018695	pspc1	87	50.214	ENSTBEG00000002361	PSPC1	63	65.015	Tupaia_belangeri
ENSACIG00000018695	pspc1	100	55.493	ENSTTRG00000003343	PSPC1	99	57.728	Tursiops_truncatus
ENSACIG00000018695	pspc1	53	78.764	ENSUAMG00000012309	PSPC1	75	78.244	Ursus_americanus
ENSACIG00000018695	pspc1	87	59.448	ENSUMAG00000013993	PSPC1	91	71.605	Ursus_maritimus
ENSACIG00000018695	pspc1	74	57.946	ENSVPAG00000010029	PSPC1	100	60.636	Vicugna_pacos
ENSACIG00000018695	pspc1	87	59.660	ENSVVUG00000006414	PSPC1	99	63.868	Vulpes_vulpes
ENSACIG00000018695	pspc1	79	72.573	ENSXCOG00000017438	pspc1	98	73.671	Xiphophorus_couchianus
ENSACIG00000018695	pspc1	77	74.010	ENSXMAG00000007929	pspc1	98	73.913	Xiphophorus_maculatus