EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000019185 (Gene tree)
Gene ID: -
Gene Symbol: lsm5
Alias: zgc:171959
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 1478 bases
Position: chrCCOE01001231.1:83505-84982
Accession: ZDB-GENE-070822-23
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000024715	LSM	PF01423.22	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000025362	-	171	-	ENSACIP00000024715	56 (aa)	-	-

Gene Model

Click here to download ENSACIG00000019185's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000019185's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000019185	lsm5	80	93.333	ENSG00000106355	LSM5	73	93.333	Homo_sapiens
ENSACIG00000019185	lsm5	98	59.770	ENSAPOG00000020779	LSM5	96	59.770	Acanthochromis_polyacanthus
ENSACIG00000019185	lsm5	80	95.556	ENSAPOG00000011743	LSM5	73	95.556	Acanthochromis_polyacanthus
ENSACIG00000019185	lsm5	98	58.621	ENSAMEG00000006700	LSM5	96	58.621	Ailuropoda_melanoleuca
ENSACIG00000019185	lsm5	98	59.770	ENSAOCG00000001636	lsm5	96	59.770	Amphiprion_ocellaris
ENSACIG00000019185	lsm5	80	95.556	ENSAPEG00000008201	lsm5	73	95.556	Amphiprion_percula
ENSACIG00000019185	lsm5	98	59.770	ENSAPEG00000008151	lsm5	96	59.770	Amphiprion_percula
ENSACIG00000019185	lsm5	96	100.000	ENSATEG00000020470	lsm5	92	100.000	Anabas_testudineus
ENSACIG00000019185	lsm5	77	93.023	ENSAPLG00000008171	LSM5	58	93.023	Anas_platyrhynchos
ENSACIG00000019185	lsm5	98	58.667	ENSANAG00000037758	-	95	58.667	Aotus_nancymaae
ENSACIG00000019185	lsm5	98	56.322	ENSANAG00000024192	-	91	56.322	Aotus_nancymaae
ENSACIG00000019185	lsm5	98	59.770	ENSANAG00000034409	-	96	59.770	Aotus_nancymaae
ENSACIG00000019185	lsm5	100	62.500	ENSACLG00000012891	lsm5	100	62.500	Astatotilapia_calliptera
ENSACIG00000019185	lsm5	88	90.566	ENSAMXG00000035543	lsm5	56	90.566	Astyanax_mexicanus
ENSACIG00000019185	lsm5	98	58.621	ENSBTAG00000002332	LSM5	96	58.621	Bos_taurus
ENSACIG00000019185	lsm5	98	58.621	ENSCJAG00000047379	LSM5	55	58.621	Callithrix_jacchus
ENSACIG00000019185	lsm5	98	55.172	ENSCJAG00000005678	-	97	55.172	Callithrix_jacchus
ENSACIG00000019185	lsm5	98	57.471	ENSCAFG00000019261	-	96	57.471	Canis_familiaris
ENSACIG00000019185	lsm5	98	58.621	ENSCAFG00020004946	LSM5	96	58.621	Canis_lupus_dingo
ENSACIG00000019185	lsm5	98	58.621	ENSCHIG00000024539	LSM5	96	58.621	Capra_hircus
ENSACIG00000019185	lsm5	98	56.322	ENSCHIG00000004079	-	96	56.322	Capra_hircus
ENSACIG00000019185	lsm5	98	59.259	ENSTSYG00000028728	-	95	59.259	Carlito_syrichta
ENSACIG00000019185	lsm5	98	58.621	ENSTSYG00000006449	-	96	58.621	Carlito_syrichta
ENSACIG00000019185	lsm5	98	41.429	ENSTSYG00000036637	-	95	41.429	Carlito_syrichta
ENSACIG00000019185	lsm5	80	82.222	ENSCAPG00000006980	LSM5	60	82.222	Cavia_aperea
ENSACIG00000019185	lsm5	98	94.545	ENSCPOG00000036386	LSM5	93	94.545	Cavia_porcellus
ENSACIG00000019185	lsm5	98	58.621	ENSCCAG00000000821	-	96	58.621	Cebus_capucinus
ENSACIG00000019185	lsm5	98	61.333	ENSCCAG00000032792	-	95	61.333	Cebus_capucinus
ENSACIG00000019185	lsm5	98	56.322	ENSCCAG00000032123	-	96	56.322	Cebus_capucinus
ENSACIG00000019185	lsm5	98	58.621	ENSCCAG00000037808	-	96	58.621	Cebus_capucinus
ENSACIG00000019185	lsm5	98	58.904	ENSCCAG00000037334	-	95	58.904	Cebus_capucinus
ENSACIG00000019185	lsm5	98	48.276	ENSCATG00000014790	-	96	48.276	Cercocebus_atys
ENSACIG00000019185	lsm5	80	93.333	ENSCATG00000040218	LSM5	73	93.333	Cercocebus_atys
ENSACIG00000019185	lsm5	98	94.545	ENSCLAG00000000202	LSM5	93	94.545	Chinchilla_lanigera
ENSACIG00000019185	lsm5	70	50.704	ENSCHOG00000005335	LSM5	93	50.704	Choloepus_hoffmanni
ENSACIG00000019185	lsm5	98	58.621	ENSCPBG00000013685	LSM5	96	58.621	Chrysemys_picta_bellii
ENSACIG00000019185	lsm5	98	52.874	ENSCING00000020625	-	98	52.874	Ciona_intestinalis
ENSACIG00000019185	lsm5	96	53.488	ENSCSAVG00000001439	-	98	53.488	Ciona_savignyi
ENSACIG00000019185	lsm5	80	93.333	ENSCANG00000039909	LSM5	73	93.333	Colobus_angolensis_palliatus
ENSACIG00000019185	lsm5	98	94.545	ENSCGRG00001015461	Lsm5	93	94.545	Cricetulus_griseus_chok1gshd
ENSACIG00000019185	lsm5	80	93.333	ENSCGRG00000007677	Lsm5	60	93.333	Cricetulus_griseus_crigri
ENSACIG00000019185	lsm5	98	96.364	ENSCSEG00000015286	lsm5	93	96.364	Cynoglossus_semilaevis
ENSACIG00000019185	lsm5	80	95.556	ENSCVAG00000004262	lsm5	95	61.628	Cyprinodon_variegatus
ENSACIG00000019185	lsm5	80	95.556	ENSDARG00000071573	lsm5	73	95.556	Danio_rerio
ENSACIG00000019185	lsm5	98	58.621	ENSDNOG00000034958	LSM5	96	58.621	Dasypus_novemcinctus
ENSACIG00000019185	lsm5	91	51.807	ENSDNOG00000049495	-	91	51.807	Dasypus_novemcinctus
ENSACIG00000019185	lsm5	98	94.545	ENSDORG00000009422	Lsm5	93	94.545	Dipodomys_ordii
ENSACIG00000019185	lsm5	61	91.176	ENSETEG00000016074	-	52	91.176	Echinops_telfairi
ENSACIG00000019185	lsm5	98	58.621	ENSETEG00000018068	LSM5	96	58.621	Echinops_telfairi
ENSACIG00000019185	lsm5	100	53.165	ENSETEG00000010651	-	97	53.165	Echinops_telfairi
ENSACIG00000019185	lsm5	80	67.347	ENSETEG00000000777	-	94	48.718	Echinops_telfairi
ENSACIG00000019185	lsm5	100	57.143	ENSEBUG00000008540	lsm5	100	57.143	Eptatretus_burgeri
ENSACIG00000019185	lsm5	98	58.621	ENSEASG00005003500	LSM5	96	58.621	Equus_asinus_asinus
ENSACIG00000019185	lsm5	98	52.564	ENSECAG00000018445	LSM5	95	52.564	Equus_caballus
ENSACIG00000019185	lsm5	80	86.667	ENSEEUG00000004102	LSM5	75	86.667	Erinaceus_europaeus
ENSACIG00000019185	lsm5	96	61.628	ENSELUG00000007792	lsm5	95	61.628	Esox_lucius
ENSACIG00000019185	lsm5	98	58.621	ENSFCAG00000000230	LSM5	96	58.621	Felis_catus
ENSACIG00000019185	lsm5	80	93.333	ENSFALG00000001892	LSM5	54	93.333	Ficedula_albicollis
ENSACIG00000019185	lsm5	98	94.545	ENSFDAG00000008767	LSM5	93	94.545	Fukomys_damarensis
ENSACIG00000019185	lsm5	86	79.167	ENSFHEG00000004011	lsm5	55	79.167	Fundulus_heteroclitus
ENSACIG00000019185	lsm5	95	61.176	ENSGMOG00000018235	lsm5	94	61.176	Gadus_morhua
ENSACIG00000019185	lsm5	98	58.621	ENSGALG00000041625	LSM5	96	58.621	Gallus_gallus
ENSACIG00000019185	lsm5	80	95.556	ENSGAFG00000016824	lsm5	73	95.556	Gambusia_affinis
ENSACIG00000019185	lsm5	96	60.465	ENSGACG00000005528	lsm5	95	60.465	Gasterosteus_aculeatus
ENSACIG00000019185	lsm5	98	58.621	ENSGAGG00000015593	LSM5	96	58.621	Gopherus_agassizii
ENSACIG00000019185	lsm5	98	58.621	ENSGGOG00000043469	LSM5	96	58.621	Gorilla_gorilla
ENSACIG00000019185	lsm5	100	62.500	ENSHBUG00000013773	lsm5	100	62.500	Haplochromis_burtoni
ENSACIG00000019185	lsm5	98	94.545	ENSHGLG00000011765	LSM5	93	94.545	Heterocephalus_glaber_female
ENSACIG00000019185	lsm5	98	89.091	ENSHGLG00100015610	LSM5	93	89.091	Heterocephalus_glaber_male
ENSACIG00000019185	lsm5	98	96.364	ENSHCOG00000008288	lsm5	93	96.364	Hippocampus_comes
ENSACIG00000019185	lsm5	96	60.465	ENSIPUG00000021095	LSM5	95	60.465	Ictalurus_punctatus
ENSACIG00000019185	lsm5	80	80.000	ENSSTOG00000033886	-	51	80.000	Ictidomys_tridecemlineatus
ENSACIG00000019185	lsm5	98	94.545	ENSSTOG00000012662	LSM5	93	94.545	Ictidomys_tridecemlineatus
ENSACIG00000019185	lsm5	98	56.944	ENSJJAG00000016144	-	87	56.944	Jaculus_jaculus
ENSACIG00000019185	lsm5	98	94.545	ENSJJAG00000012145	-	93	94.545	Jaculus_jaculus
ENSACIG00000019185	lsm5	98	58.621	ENSKMAG00000021861	lsm5	96	58.621	Kryptolebias_marmoratus
ENSACIG00000019185	lsm5	82	55.128	ENSLBEG00000009235	LSM5	61	55.128	Labrus_bergylta
ENSACIG00000019185	lsm5	98	59.770	ENSLACG00000022448	LSM5	96	59.770	Latimeria_chalumnae
ENSACIG00000019185	lsm5	96	61.628	ENSLOCG00000012903	lsm5	95	61.628	Lepisosteus_oculatus
ENSACIG00000019185	lsm5	98	60.000	ENSLAFG00000027938	-	95	60.000	Loxodonta_africana
ENSACIG00000019185	lsm5	98	58.621	ENSLAFG00000029579	LSM5	96	58.621	Loxodonta_africana
ENSACIG00000019185	lsm5	98	57.471	ENSMFAG00000030152	-	96	57.471	Macaca_fascicularis
ENSACIG00000019185	lsm5	98	58.621	ENSMFAG00000038508	LSM5	96	58.621	Macaca_fascicularis
ENSACIG00000019185	lsm5	98	57.471	ENSMMUG00000030131	-	96	57.471	Macaca_mulatta
ENSACIG00000019185	lsm5	98	49.425	ENSMMUG00000039822	-	96	49.425	Macaca_mulatta
ENSACIG00000019185	lsm5	80	93.333	ENSMNEG00000015331	LSM5	73	93.333	Macaca_nemestrina
ENSACIG00000019185	lsm5	98	57.471	ENSMNEG00000037935	-	96	57.471	Macaca_nemestrina
ENSACIG00000019185	lsm5	98	48.276	ENSMLEG00000034037	-	98	48.276	Mandrillus_leucophaeus
ENSACIG00000019185	lsm5	98	58.621	ENSMLEG00000024945	LSM5	96	58.621	Mandrillus_leucophaeus
ENSACIG00000019185	lsm5	100	62.500	ENSMZEG00005019554	lsm5	100	62.500	Maylandia_zebra
ENSACIG00000019185	lsm5	98	58.621	ENSMGAG00000012117	LSM5	96	58.621	Meleagris_gallopavo
ENSACIG00000019185	lsm5	98	94.545	ENSMAUG00000012222	Lsm5	93	94.545	Mesocricetus_auratus
ENSACIG00000019185	lsm5	98	70.423	ENSMICG00000033928	-	92	70.423	Microcebus_murinus
ENSACIG00000019185	lsm5	98	58.621	ENSMICG00000005353	LSM5	96	58.621	Microcebus_murinus
ENSACIG00000019185	lsm5	98	94.545	ENSMOCG00000012018	Lsm5	93	94.545	Microtus_ochrogaster
ENSACIG00000019185	lsm5	80	95.556	ENSMMOG00000004026	lsm5	52	95.556	Mola_mola
ENSACIG00000019185	lsm5	80	93.333	ENSMODG00000013274	-	73	93.333	Monodelphis_domestica
ENSACIG00000019185	lsm5	80	88.889	ENSMALG00000010343	lsm5	73	88.889	Monopterus_albus
ENSACIG00000019185	lsm5	98	94.545	MGP_CAROLIEiJ_G0028421	Lsm5	93	94.545	Mus_caroli
ENSACIG00000019185	lsm5	98	94.545	ENSMUSG00000091625	Lsm5	93	94.545	Mus_musculus
ENSACIG00000019185	lsm5	98	94.545	MGP_PahariEiJ_G0022171	Lsm5	93	94.545	Mus_pahari
ENSACIG00000019185	lsm5	98	94.545	MGP_SPRETEiJ_G0029423	Lsm5	93	94.545	Mus_spretus
ENSACIG00000019185	lsm5	98	58.621	ENSMLUG00000017028	LSM5	96	58.621	Myotis_lucifugus
ENSACIG00000019185	lsm5	98	60.241	ENSNGAG00000017707	-	95	60.241	Nannospalax_galili
ENSACIG00000019185	lsm5	98	61.039	ENSNGAG00000022569	-	93	61.039	Nannospalax_galili
ENSACIG00000019185	lsm5	98	94.545	ENSNGAG00000024142	Lsm5	93	94.545	Nannospalax_galili
ENSACIG00000019185	lsm5	80	95.556	ENSNBRG00000011386	lsm5	60	95.556	Neolamprologus_brichardi
ENSACIG00000019185	lsm5	98	58.621	ENSNLEG00000015268	LSM5	96	58.621	Nomascus_leucogenys
ENSACIG00000019185	lsm5	80	93.333	ENSOPRG00000002443	LSM5	60	93.333	Ochotona_princeps
ENSACIG00000019185	lsm5	98	58.621	ENSODEG00000019072	-	96	58.621	Octodon_degus
ENSACIG00000019185	lsm5	98	94.545	ENSODEG00000008258	-	93	94.545	Octodon_degus
ENSACIG00000019185	lsm5	73	51.220	ENSOANG00000014540	-	55	51.220	Ornithorhynchus_anatinus
ENSACIG00000019185	lsm5	98	58.621	ENSOCUG00000029043	LSM5	96	58.621	Oryctolagus_cuniculus
ENSACIG00000019185	lsm5	96	59.302	ENSORLG00000027725	lsm5	55	59.302	Oryzias_latipes
ENSACIG00000019185	lsm5	80	93.333	ENSORLG00020003019	lsm5	81	53.659	Oryzias_latipes_hni
ENSACIG00000019185	lsm5	98	58.621	ENSORLG00015003338	lsm5	96	58.621	Oryzias_latipes_hsok
ENSACIG00000019185	lsm5	98	58.621	ENSOGAG00000013892	LSM5	96	58.621	Otolemur_garnettii
ENSACIG00000019185	lsm5	98	58.621	ENSOARG00000006944	LSM5	96	58.621	Ovis_aries
ENSACIG00000019185	lsm5	98	58.621	ENSPPAG00000003697	-	96	58.621	Pan_paniscus
ENSACIG00000019185	lsm5	98	58.621	ENSPPRG00000002550	LSM5	96	58.621	Panthera_pardus
ENSACIG00000019185	lsm5	98	58.621	ENSPTIG00000015604	LSM5	96	58.621	Panthera_tigris_altaica
ENSACIG00000019185	lsm5	98	58.621	ENSPTRG00000019057	LSM5	96	58.621	Pan_troglodytes
ENSACIG00000019185	lsm5	98	43.373	ENSPTRG00000049488	-	95	49.398	Pan_troglodytes
ENSACIG00000019185	lsm5	98	49.425	ENSPANG00000032538	-	96	49.425	Papio_anubis
ENSACIG00000019185	lsm5	98	58.621	ENSPANG00000032179	-	96	58.621	Papio_anubis
ENSACIG00000019185	lsm5	98	60.920	ENSPKIG00000011910	lsm5	96	60.920	Paramormyrops_kingsleyae
ENSACIG00000019185	lsm5	77	93.023	ENSPSIG00000014796	LSM5	58	93.023	Pelodiscus_sinensis
ENSACIG00000019185	lsm5	80	95.556	ENSPMGG00000011699	lsm5	73	95.556	Periophthalmus_magnuspinnatus
ENSACIG00000019185	lsm5	96	61.628	ENSPFOG00000001433	lsm5	95	61.628	Poecilia_formosa
ENSACIG00000019185	lsm5	96	61.628	ENSPLAG00000009665	lsm5	95	61.628	Poecilia_latipinna
ENSACIG00000019185	lsm5	96	61.628	ENSPMEG00000022265	lsm5	95	61.628	Poecilia_mexicana
ENSACIG00000019185	lsm5	80	95.556	ENSPREG00000022452	lsm5	73	95.556	Poecilia_reticulata
ENSACIG00000019185	lsm5	98	56.322	ENSPPYG00000017661	LSM5	96	56.322	Pongo_abelii
ENSACIG00000019185	lsm5	80	54.545	ENSPCAG00000013740	LSM5	95	54.545	Procavia_capensis
ENSACIG00000019185	lsm5	98	58.621	ENSPVAG00000009786	LSM5	96	58.621	Pteropus_vampyrus
ENSACIG00000019185	lsm5	100	62.500	ENSPNYG00000022236	lsm5	100	62.500	Pundamilia_nyererei
ENSACIG00000019185	lsm5	96	60.465	ENSPNAG00000001887	lsm5	95	60.465	Pygocentrus_nattereri
ENSACIG00000019185	lsm5	98	58.621	ENSRNOG00000042126	Lsm5	96	58.621	Rattus_norvegicus
ENSACIG00000019185	lsm5	98	57.471	ENSRBIG00000024431	-	96	57.471	Rhinopithecus_bieti
ENSACIG00000019185	lsm5	98	58.621	ENSRBIG00000030714	-	96	58.621	Rhinopithecus_bieti
ENSACIG00000019185	lsm5	80	93.333	ENSRBIG00000027803	-	73	93.333	Rhinopithecus_bieti
ENSACIG00000019185	lsm5	98	58.621	ENSRBIG00000030340	-	96	58.621	Rhinopithecus_bieti
ENSACIG00000019185	lsm5	80	93.333	ENSRROG00000042782	-	73	93.333	Rhinopithecus_roxellana
ENSACIG00000019185	lsm5	98	58.621	ENSRROG00000023884	-	96	58.621	Rhinopithecus_roxellana
ENSACIG00000019185	lsm5	98	58.621	ENSRROG00000004655	-	96	58.621	Rhinopithecus_roxellana
ENSACIG00000019185	lsm5	98	58.667	ENSSBOG00000034794	-	95	58.667	Saimiri_boliviensis_boliviensis
ENSACIG00000019185	lsm5	98	58.621	ENSSBOG00000012312	LSM5	96	58.621	Saimiri_boliviensis_boliviensis
ENSACIG00000019185	lsm5	98	57.471	ENSSBOG00000019124	-	96	57.471	Saimiri_boliviensis_boliviensis
ENSACIG00000019185	lsm5	98	60.920	ENSSFOG00015010099	lsm5	96	60.920	Scleropages_formosus
ENSACIG00000019185	lsm5	96	98.148	ENSSMAG00000007895	lsm5	92	98.148	Scophthalmus_maximus
ENSACIG00000019185	lsm5	80	95.556	ENSSDUG00000010762	lsm5	73	95.556	Seriola_dumerili
ENSACIG00000019185	lsm5	98	98.182	ENSSLDG00000025242	lsm5	93	98.182	Seriola_lalandi_dorsalis
ENSACIG00000019185	lsm5	80	93.333	ENSSPUG00000002690	LSM5	73	93.333	Sphenodon_punctatus
ENSACIG00000019185	lsm5	98	96.364	ENSSPAG00000005435	lsm5	93	96.364	Stegastes_partitus
ENSACIG00000019185	lsm5	80	93.333	ENSSSCG00000026064	-	96	58.621	Sus_scrofa
ENSACIG00000019185	lsm5	98	57.471	ENSTGUG00000017539	LSM5	96	57.471	Taeniopygia_guttata
ENSACIG00000019185	lsm5	84	51.190	ENSTRUG00000017749	lsm5	65	51.190	Takifugu_rubripes
ENSACIG00000019185	lsm5	100	60.227	ENSTNIG00000008695	lsm5	100	60.227	Tetraodon_nigroviridis
ENSACIG00000019185	lsm5	98	58.621	ENSTBEG00000004876	LSM5	96	58.621	Tupaia_belangeri
ENSACIG00000019185	lsm5	98	58.621	ENSTTRG00000004237	LSM5	96	58.621	Tursiops_truncatus
ENSACIG00000019185	lsm5	96	58.140	ENSUMAG00000002625	LSM5	62	58.140	Ursus_maritimus
ENSACIG00000019185	lsm5	98	58.621	ENSVPAG00000009985	LSM5	96	58.621	Vicugna_pacos
ENSACIG00000019185	lsm5	98	58.621	ENSVVUG00000021311	LSM5	96	58.621	Vulpes_vulpes
ENSACIG00000019185	lsm5	80	95.556	ENSXCOG00000015348	lsm5	73	95.556	Xiphophorus_couchianus
ENSACIG00000019185	lsm5	96	61.628	ENSXMAG00000029988	lsm5	95	61.628	Xiphophorus_maculatus