EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000019949 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 10051 bases
Position: chrCCOE01000292.1:602206-612256
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000025783	UPF1_Zn_bind	PF09416.10	1.8e-75	1	1
ENSACIP00000025783	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000026460	-	3291	-	ENSACIP00000025783	1096 (aa)	-	-

Gene Model

Click here to download ENSACIG00000019949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000019949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000019949	upf1	93	93.171	ENSACIG00000010985	-	100	93.268

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000019949	upf1	100	91.370	ENSG00000005007	UPF1	100	91.022	Homo_sapiens
ENSACIG00000019949	upf1	100	93.370	ENSAPOG00000010916	-	100	93.370	Acanthochromis_polyacanthus
ENSACIG00000019949	upf1	100	97.574	ENSAPOG00000023773	upf1	100	97.574	Acanthochromis_polyacanthus
ENSACIG00000019949	upf1	100	90.885	ENSAMEG00000011474	UPF1	100	90.539	Ailuropoda_melanoleuca
ENSACIG00000019949	upf1	100	97.574	ENSAOCG00000018519	upf1	100	97.574	Amphiprion_ocellaris
ENSACIG00000019949	upf1	100	93.370	ENSAOCG00000006352	-	100	93.370	Amphiprion_ocellaris
ENSACIG00000019949	upf1	100	97.574	ENSAPEG00000016344	upf1	100	97.574	Amphiprion_percula
ENSACIG00000019949	upf1	100	93.370	ENSAPEG00000006292	-	100	93.370	Amphiprion_percula
ENSACIG00000019949	upf1	100	93.370	ENSATEG00000016606	-	100	93.370	Anabas_testudineus
ENSACIG00000019949	upf1	100	96.057	ENSATEG00000017867	upf1	100	96.057	Anabas_testudineus
ENSACIG00000019949	upf1	95	92.918	ENSAPLG00000009175	UPF1	100	92.884	Anas_platyrhynchos
ENSACIG00000019949	upf1	95	91.193	ENSANAG00000024107	UPF1	95	90.728	Aotus_nancymaae
ENSACIG00000019949	upf1	100	99.544	ENSACLG00000007181	upf1	100	99.544	Astatotilapia_calliptera
ENSACIG00000019949	upf1	100	93.279	ENSACLG00000022630	-	100	93.279	Astatotilapia_calliptera
ENSACIG00000019949	upf1	100	94.818	ENSAMXG00000042187	upf1	100	94.661	Astyanax_mexicanus
ENSACIG00000019949	upf1	100	90.901	ENSBTAG00000020922	UPF1	100	90.556	Bos_taurus
ENSACIG00000019949	upf1	81	54.688	WBGene00004880	smg-2	83	54.464	Caenorhabditis_elegans
ENSACIG00000019949	upf1	100	90.485	ENSCJAG00000019627	UPF1	100	90.141	Callithrix_jacchus
ENSACIG00000019949	upf1	100	90.661	ENSCAFG00000014578	UPF1	100	90.317	Canis_familiaris
ENSACIG00000019949	upf1	100	91.548	ENSCAFG00020012347	UPF1	100	91.200	Canis_lupus_dingo
ENSACIG00000019949	upf1	100	91.793	ENSCHIG00000011018	UPF1	100	91.444	Capra_hircus
ENSACIG00000019949	upf1	95	92.614	ENSTSYG00000008877	UPF1	98	92.148	Carlito_syrichta
ENSACIG00000019949	upf1	96	91.948	ENSCAPG00000005758	UPF1	95	91.958	Cavia_aperea
ENSACIG00000019949	upf1	100	91.756	ENSCPOG00000025463	UPF1	100	91.226	Cavia_porcellus
ENSACIG00000019949	upf1	100	91.370	ENSCCAG00000032175	UPF1	100	91.022	Cebus_capucinus
ENSACIG00000019949	upf1	94	92.586	ENSCATG00000040306	UPF1	98	91.706	Cercocebus_atys
ENSACIG00000019949	upf1	95	92.614	ENSCLAG00000004037	UPF1	99	92.053	Chinchilla_lanigera
ENSACIG00000019949	upf1	100	91.370	ENSCSAG00000005276	UPF1	100	91.022	Chlorocebus_sabaeus
ENSACIG00000019949	upf1	100	91.950	ENSCPBG00000012513	UPF1	100	91.914	Chrysemys_picta_bellii
ENSACIG00000019949	upf1	77	79.695	ENSCING00000021399	-	99	79.460	Ciona_intestinalis
ENSACIG00000019949	upf1	99	72.907	ENSCSAVG00000006533	-	99	72.516	Ciona_savignyi
ENSACIG00000019949	upf1	95	92.519	ENSCANG00000029819	UPF1	97	92.053	Colobus_angolensis_palliatus
ENSACIG00000019949	upf1	100	91.600	ENSCGRG00001021067	Upf1	100	91.161	Cricetulus_griseus_chok1gshd
ENSACIG00000019949	upf1	95	92.330	ENSCGRG00000013480	Upf1	98	91.769	Cricetulus_griseus_crigri
ENSACIG00000019949	upf1	100	90.537	ENSCSEG00000017239	upf1	100	90.537	Cynoglossus_semilaevis
ENSACIG00000019949	upf1	100	93.478	ENSCSEG00000016159	-	100	93.449	Cynoglossus_semilaevis
ENSACIG00000019949	upf1	100	93.188	ENSCVAG00000010561	upf1	100	93.188	Cyprinodon_variegatus
ENSACIG00000019949	upf1	100	94.727	ENSDARG00000016302	upf1	100	94.751	Danio_rerio
ENSACIG00000019949	upf1	95	90.161	ENSDORG00000009984	Upf1	95	89.603	Dipodomys_ordii
ENSACIG00000019949	upf1	85	72.359	FBgn0030354	Upf1	82	70.637	Drosophila_melanogaster
ENSACIG00000019949	upf1	54	86.921	ENSEBUG00000010069	upf1	96	87.252	Eptatretus_burgeri
ENSACIG00000019949	upf1	100	91.793	ENSEASG00005006549	UPF1	100	91.444	Equus_asinus_asinus
ENSACIG00000019949	upf1	100	91.793	ENSECAG00000010639	UPF1	100	91.444	Equus_caballus
ENSACIG00000019949	upf1	100	93.953	ENSELUG00000020917	upf1	100	93.659	Esox_lucius
ENSACIG00000019949	upf1	100	92.716	ENSELUG00000012916	-	100	92.086	Esox_lucius
ENSACIG00000019949	upf1	100	90.661	ENSFCAG00000009757	UPF1	100	90.317	Felis_catus
ENSACIG00000019949	upf1	95	93.441	ENSFALG00000009312	UPF1	96	93.410	Ficedula_albicollis
ENSACIG00000019949	upf1	95	92.519	ENSFDAG00000014816	UPF1	99	91.958	Fukomys_damarensis
ENSACIG00000019949	upf1	100	93.153	ENSFHEG00000006428	upf1	100	92.252	Fundulus_heteroclitus
ENSACIG00000019949	upf1	86	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSACIG00000019949	upf1	100	91.457	ENSGMOG00000007541	upf1	100	91.727	Gadus_morhua
ENSACIG00000019949	upf1	100	91.711	ENSGALG00000003220	UPF1	100	91.585	Gallus_gallus
ENSACIG00000019949	upf1	63	96.542	ENSGAFG00000015443	-	85	96.542	Gambusia_affinis
ENSACIG00000019949	upf1	100	93.091	ENSGAFG00000004831	upf1	100	93.110	Gambusia_affinis
ENSACIG00000019949	upf1	100	92.453	ENSGAGG00000022217	UPF1	100	92.509	Gopherus_agassizii
ENSACIG00000019949	upf1	95	93.493	ENSGGOG00000002608	UPF1	99	93.021	Gorilla_gorilla
ENSACIG00000019949	upf1	89	98.701	ENSHBUG00000014694	upf1	100	98.701	Haplochromis_burtoni
ENSACIG00000019949	upf1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSACIG00000019949	upf1	100	90.485	ENSHGLG00000010900	UPF1	100	90.531	Heterocephalus_glaber_female
ENSACIG00000019949	upf1	95	90.814	ENSHGLG00100005904	UPF1	96	90.771	Heterocephalus_glaber_male
ENSACIG00000019949	upf1	100	93.182	ENSHCOG00000008918	upf1	100	93.122	Hippocampus_comes
ENSACIG00000019949	upf1	100	94.909	ENSIPUG00000005108	UPF1	100	94.932	Ictalurus_punctatus
ENSACIG00000019949	upf1	100	91.370	ENSSTOG00000009196	UPF1	100	90.933	Ictidomys_tridecemlineatus
ENSACIG00000019949	upf1	100	90.869	ENSJJAG00000023151	Upf1	100	90.434	Jaculus_jaculus
ENSACIG00000019949	upf1	100	93.006	ENSKMAG00000004962	upf1	100	93.006	Kryptolebias_marmoratus
ENSACIG00000019949	upf1	100	93.013	ENSLBEG00000027848	-	100	93.013	Labrus_bergylta
ENSACIG00000019949	upf1	100	96.137	ENSLBEG00000014862	upf1	100	96.137	Labrus_bergylta
ENSACIG00000019949	upf1	63	93.030	ENSLACG00000008482	UPF1	100	92.461	Latimeria_chalumnae
ENSACIG00000019949	upf1	100	94.182	ENSLOCG00000002072	upf1	100	94.182	Lepisosteus_oculatus
ENSACIG00000019949	upf1	100	90.556	ENSLAFG00000014963	UPF1	100	90.514	Loxodonta_africana
ENSACIG00000019949	upf1	100	91.127	ENSMFAG00000037748	UPF1	100	90.780	Macaca_fascicularis
ENSACIG00000019949	upf1	100	90.885	ENSMMUG00000023286	UPF1	100	90.539	Macaca_mulatta
ENSACIG00000019949	upf1	100	91.127	ENSMNEG00000000046	UPF1	100	90.780	Macaca_nemestrina
ENSACIG00000019949	upf1	95	92.519	ENSMLEG00000028404	UPF1	99	92.053	Mandrillus_leucophaeus
ENSACIG00000019949	upf1	100	96.237	ENSMAMG00000006229	upf1	100	96.237	Mastacembelus_armatus
ENSACIG00000019949	upf1	100	93.194	ENSMAMG00000006231	-	100	93.194	Mastacembelus_armatus
ENSACIG00000019949	upf1	100	93.279	ENSMZEG00005016386	-	100	93.279	Maylandia_zebra
ENSACIG00000019949	upf1	100	98.377	ENSMZEG00005003489	upf1	100	98.377	Maylandia_zebra
ENSACIG00000019949	upf1	95	92.431	ENSMGAG00000004745	UPF1	100	92.395	Meleagris_gallopavo
ENSACIG00000019949	upf1	95	92.330	ENSMAUG00000011398	Upf1	95	91.769	Mesocricetus_auratus
ENSACIG00000019949	upf1	100	91.459	ENSMICG00000001659	UPF1	100	91.111	Microcebus_murinus
ENSACIG00000019949	upf1	100	90.708	ENSMOCG00000005699	Upf1	100	90.363	Microtus_ochrogaster
ENSACIG00000019949	upf1	95	90.718	ENSMMOG00000007537	-	99	90.718	Mola_mola
ENSACIG00000019949	upf1	100	95.533	ENSMMOG00000007881	upf1	100	95.898	Mola_mola
ENSACIG00000019949	upf1	100	90.598	ENSMODG00000003689	UPF1	100	90.733	Monodelphis_domestica
ENSACIG00000019949	upf1	100	96.171	ENSMALG00000000144	upf1	100	96.171	Monopterus_albus
ENSACIG00000019949	upf1	100	91.946	ENSMALG00000018100	-	100	91.946	Monopterus_albus
ENSACIG00000019949	upf1	100	91.510	MGP_CAROLIEiJ_G0031142	Upf1	100	91.071	Mus_caroli
ENSACIG00000019949	upf1	100	91.510	ENSMUSG00000058301	Upf1	100	91.071	Mus_musculus
ENSACIG00000019949	upf1	100	91.510	MGP_PahariEiJ_G0021607	Upf1	100	91.071	Mus_pahari
ENSACIG00000019949	upf1	100	91.510	MGP_SPRETEiJ_G0032260	Upf1	100	91.071	Mus_spretus
ENSACIG00000019949	upf1	100	91.548	ENSMPUG00000015516	UPF1	100	91.200	Mustela_putorius_furo
ENSACIG00000019949	upf1	99	91.429	ENSMLUG00000012122	UPF1	99	91.079	Myotis_lucifugus
ENSACIG00000019949	upf1	100	90.291	ENSNGAG00000024107	Upf1	100	89.859	Nannospalax_galili
ENSACIG00000019949	upf1	100	97.445	ENSNBRG00000000670	upf1	100	97.445	Neolamprologus_brichardi
ENSACIG00000019949	upf1	100	89.842	ENSNBRG00000022069	-	100	92.517	Neolamprologus_brichardi
ENSACIG00000019949	upf1	95	86.837	ENSNLEG00000006062	UPF1	99	86.377	Nomascus_leucogenys
ENSACIG00000019949	upf1	83	86.990	ENSMEUG00000014146	-	83	86.863	Notamacropus_eugenii
ENSACIG00000019949	upf1	95	86.986	ENSOPRG00000014018	UPF1	99	86.233	Ochotona_princeps
ENSACIG00000019949	upf1	100	91.749	ENSODEG00000012426	UPF1	100	91.219	Octodon_degus
ENSACIG00000019949	upf1	100	98.467	ENSONIG00000010452	upf1	100	98.467	Oreochromis_niloticus
ENSACIG00000019949	upf1	100	93.279	ENSONIG00000012729	-	100	93.279	Oreochromis_niloticus
ENSACIG00000019949	upf1	100	90.724	ENSOANG00000004568	UPF1	100	90.283	Ornithorhynchus_anatinus
ENSACIG00000019949	upf1	100	92.941	ENSORLG00000008453	upf1	100	92.747	Oryzias_latipes
ENSACIG00000019949	upf1	100	92.857	ENSORLG00020014758	upf1	100	92.663	Oryzias_latipes_hni
ENSACIG00000019949	upf1	100	92.857	ENSORLG00015010165	upf1	100	92.663	Oryzias_latipes_hsok
ENSACIG00000019949	upf1	100	93.484	ENSOMEG00000003665	upf1	100	93.291	Oryzias_melastigma
ENSACIG00000019949	upf1	100	91.459	ENSOGAG00000012866	UPF1	100	91.111	Otolemur_garnettii
ENSACIG00000019949	upf1	96	89.734	ENSOARG00000010739	UPF1	100	89.194	Ovis_aries
ENSACIG00000019949	upf1	95	92.453	ENSPPAG00000043884	UPF1	96	91.989	Pan_paniscus
ENSACIG00000019949	upf1	100	90.661	ENSPPRG00000023470	UPF1	100	90.317	Panthera_pardus
ENSACIG00000019949	upf1	95	91.500	ENSPTIG00000010159	UPF1	99	91.031	Panthera_tigris_altaica
ENSACIG00000019949	upf1	100	91.127	ENSPTRG00000010721	UPF1	100	90.780	Pan_troglodytes
ENSACIG00000019949	upf1	100	91.127	ENSPANG00000008847	UPF1	100	90.780	Papio_anubis
ENSACIG00000019949	upf1	91	96.389	ENSPKIG00000006069	upf1	96	96.389	Paramormyrops_kingsleyae
ENSACIG00000019949	upf1	70	91.818	ENSPSIG00000009491	UPF1	100	91.765	Pelodiscus_sinensis
ENSACIG00000019949	upf1	100	93.279	ENSPMGG00000017327	upf1	100	93.563	Periophthalmus_magnuspinnatus
ENSACIG00000019949	upf1	100	90.708	ENSPEMG00000001085	Upf1	100	90.274	Peromyscus_maniculatus_bairdii
ENSACIG00000019949	upf1	100	87.624	ENSPMAG00000001206	upf1	100	87.624	Petromyzon_marinus
ENSACIG00000019949	upf1	100	91.986	ENSPCIG00000006156	UPF1	100	92.039	Phascolarctos_cinereus
ENSACIG00000019949	upf1	100	94.409	ENSPLAG00000018155	-	100	93.496	Poecilia_latipinna
ENSACIG00000019949	upf1	100	93.091	ENSPLAG00000016232	-	100	93.273	Poecilia_latipinna
ENSACIG00000019949	upf1	100	93.006	ENSPMEG00000016319	-	100	93.188	Poecilia_mexicana
ENSACIG00000019949	upf1	100	95.620	ENSPMEG00000011443	-	100	95.620	Poecilia_mexicana
ENSACIG00000019949	upf1	100	92.909	ENSPREG00000011247	-	100	93.091	Poecilia_reticulata
ENSACIG00000019949	upf1	100	94.239	ENSPREG00000009940	upf1	100	93.508	Poecilia_reticulata
ENSACIG00000019949	upf1	100	85.790	ENSPPYG00000009752	UPF1	100	84.737	Pongo_abelii
ENSACIG00000019949	upf1	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSACIG00000019949	upf1	100	91.143	ENSPCOG00000023813	UPF1	100	90.796	Propithecus_coquereli
ENSACIG00000019949	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSACIG00000019949	upf1	100	98.377	ENSPNYG00000003694	upf1	100	98.377	Pundamilia_nyererei
ENSACIG00000019949	upf1	100	93.279	ENSPNYG00000016731	-	100	93.279	Pundamilia_nyererei
ENSACIG00000019949	upf1	100	94.909	ENSPNAG00000025614	upf1	100	94.751	Pygocentrus_nattereri
ENSACIG00000019949	upf1	100	91.510	ENSRNOG00000020134	Upf1	100	91.071	Rattus_norvegicus
ENSACIG00000019949	upf1	95	90.152	ENSRBIG00000013894	UPF1	98	92.818	Rhinopithecus_bieti
ENSACIG00000019949	upf1	95	92.519	ENSRROG00000040935	UPF1	98	92.818	Rhinopithecus_roxellana
ENSACIG00000019949	upf1	73	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSACIG00000019949	upf1	95	92.512	ENSSBOG00000023632	UPF1	96	92.045	Saimiri_boliviensis_boliviensis
ENSACIG00000019949	upf1	95	92.817	ENSSHAG00000010499	UPF1	100	92.783	Sarcophilus_harrisii
ENSACIG00000019949	upf1	100	94.096	ENSSFOG00015021095	upf1	100	94.107	Scleropages_formosus
ENSACIG00000019949	upf1	100	93.376	ENSSMAG00000021018	-	100	93.376	Scophthalmus_maximus
ENSACIG00000019949	upf1	100	95.512	ENSSMAG00000005055	upf1	100	95.512	Scophthalmus_maximus
ENSACIG00000019949	upf1	100	93.376	ENSSDUG00000009629	-	100	93.376	Seriola_dumerili
ENSACIG00000019949	upf1	100	96.505	ENSSDUG00000013320	upf1	100	96.505	Seriola_dumerili
ENSACIG00000019949	upf1	100	97.378	ENSSLDG00000020868	upf1	100	97.378	Seriola_lalandi_dorsalis
ENSACIG00000019949	upf1	100	93.376	ENSSLDG00000006878	-	100	93.376	Seriola_lalandi_dorsalis
ENSACIG00000019949	upf1	100	92.011	ENSSPUG00000010538	UPF1	100	92.065	Sphenodon_punctatus
ENSACIG00000019949	upf1	100	95.636	ENSSPAG00000000003	upf1	100	95.636	Stegastes_partitus
ENSACIG00000019949	upf1	100	93.455	ENSSPAG00000011521	-	100	93.455	Stegastes_partitus
ENSACIG00000019949	upf1	100	91.704	ENSSSCG00000039301	UPF1	99	93.034	Sus_scrofa
ENSACIG00000019949	upf1	82	87.447	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSACIG00000019949	upf1	100	95.148	ENSTRUG00000000150	upf1	100	95.148	Takifugu_rubripes
ENSACIG00000019949	upf1	100	92.182	ENSTRUG00000005131	-	100	92.280	Takifugu_rubripes
ENSACIG00000019949	upf1	100	88.046	ENSTTRG00000011544	UPF1	100	87.611	Tursiops_truncatus
ENSACIG00000019949	upf1	100	91.548	ENSUAMG00000007093	UPF1	100	91.200	Ursus_americanus
ENSACIG00000019949	upf1	95	93.601	ENSUMAG00000006652	UPF1	99	93.402	Ursus_maritimus
ENSACIG00000019949	upf1	100	91.548	ENSVVUG00000007797	UPF1	100	91.200	Vulpes_vulpes
ENSACIG00000019949	upf1	100	79.104	ENSXETG00000013602	upf1	100	78.943	Xenopus_tropicalis
ENSACIG00000019949	upf1	97	94.434	ENSXCOG00000015275	-	96	94.057	Xiphophorus_couchianus
ENSACIG00000019949	upf1	94	93.398	ENSXCOG00000005764	-	99	93.417	Xiphophorus_couchianus
ENSACIG00000019949	upf1	100	94.617	ENSXMAG00000001703	-	100	94.252	Xiphophorus_maculatus
ENSACIG00000019949	upf1	100	93.097	ENSXMAG00000002540	-	100	93.279	Xiphophorus_maculatus