EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000020468 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 8269 bases
Position: chrCCOE01000607.1:724592-732860
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000026483	Smg4_UPF3	PF03467.15	1.9e-54	1	1
ENSACIP00000026493	Smg4_UPF3	PF03467.15	3.7e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000027176	-	1443	-	ENSACIP00000026483	480 (aa)	-	-
ENSACIT00000027186	-	450	-	ENSACIP00000026493	149 (aa)	-	-

Gene Model

Click here to download ENSACIG00000020468's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000020468's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000020468	upf3a	69	70.874	ENSACIG00000013582	upf3b	92	46.903

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000020468	upf3a	70	80.952	ENSG00000169062	UPF3A	90	54.305	Homo_sapiens
ENSACIG00000020468	upf3a	83	66.129	ENSG00000125351	UPF3B	76	70.732	Homo_sapiens
ENSACIG00000020468	upf3a	99	93.067	ENSAPOG00000013484	upf3a	98	93.067	Acanthochromis_polyacanthus
ENSACIG00000020468	upf3a	99	93.487	ENSAOCG00000020784	upf3a	98	93.487	Amphiprion_ocellaris
ENSACIG00000020468	upf3a	70	74.286	ENSAOCG00000000706	upf3b	88	48.157	Amphiprion_ocellaris
ENSACIG00000020468	upf3a	99	93.487	ENSAPEG00000003519	upf3a	98	93.487	Amphiprion_percula
ENSACIG00000020468	upf3a	99	90.336	ENSATEG00000005843	upf3a	98	90.336	Anabas_testudineus
ENSACIG00000020468	upf3a	70	82.692	ENSACAG00000001540	UPF3A	94	62.981	Anolis_carolinensis
ENSACIG00000020468	upf3a	70	81.905	ENSANAG00000021713	UPF3A	99	51.000	Aotus_nancymaae
ENSACIG00000020468	upf3a	83	66.129	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSACIG00000020468	upf3a	66	66.667	ENSANAG00000033169	-	55	64.493	Aotus_nancymaae
ENSACIG00000020468	upf3a	99	95.588	ENSACLG00000026274	upf3a	98	95.588	Astatotilapia_calliptera
ENSACIG00000020468	upf3a	79	70.085	ENSAMXG00000000199	upf3b	56	67.066	Astyanax_mexicanus
ENSACIG00000020468	upf3a	99	79.158	ENSAMXG00000002608	upf3a	99	78.992	Astyanax_mexicanus
ENSACIG00000020468	upf3a	70	82.857	ENSBTAG00000047365	-	71	77.707	Bos_taurus
ENSACIG00000020468	upf3a	83	66.129	ENSBTAG00000035615	UPF3B	58	67.797	Bos_taurus
ENSACIG00000020468	upf3a	70	81.905	ENSCJAG00000019102	UPF3A	95	52.510	Callithrix_jacchus
ENSACIG00000020468	upf3a	83	65.323	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSACIG00000020468	upf3a	83	66.129	ENSCAFG00020004074	UPF3B	69	66.279	Canis_lupus_dingo
ENSACIG00000020468	upf3a	83	66.129	ENSCHIG00000018011	-	58	67.797	Capra_hircus
ENSACIG00000020468	upf3a	69	82.524	ENSCHIG00000008682	UPF3A	85	52.097	Capra_hircus
ENSACIG00000020468	upf3a	77	51.688	ENSTSYG00000001918	UPF3A	99	51.680	Carlito_syrichta
ENSACIG00000020468	upf3a	83	65.323	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSACIG00000020468	upf3a	70	81.905	ENSCCAG00000018406	UPF3A	95	53.138	Cebus_capucinus
ENSACIG00000020468	upf3a	83	50.000	ENSCCAG00000029813	-	52	59.494	Cebus_capucinus
ENSACIG00000020468	upf3a	70	81.905	ENSCATG00000029733	UPF3A	95	54.371	Cercocebus_atys
ENSACIG00000020468	upf3a	83	66.129	ENSCATG00000017506	UPF3B	77	70.303	Cercocebus_atys
ENSACIG00000020468	upf3a	71	81.308	ENSCSAG00000017388	UPF3A	95	54.470	Chlorocebus_sabaeus
ENSACIG00000020468	upf3a	74	83.784	ENSCPBG00000022854	-	85	83.784	Chrysemys_picta_bellii
ENSACIG00000020468	upf3a	71	52.830	ENSCING00000008396	-	91	52.381	Ciona_intestinalis
ENSACIG00000020468	upf3a	83	66.129	ENSCANG00000029220	UPF3B	52	70.732	Colobus_angolensis_palliatus
ENSACIG00000020468	upf3a	79	71.795	ENSCGRG00001017387	Upf3a	89	57.330	Cricetulus_griseus_chok1gshd
ENSACIG00000020468	upf3a	79	71.795	ENSCGRG00000001468	Upf3a	89	57.330	Cricetulus_griseus_crigri
ENSACIG00000020468	upf3a	99	87.395	ENSCSEG00000005106	upf3a	98	87.395	Cynoglossus_semilaevis
ENSACIG00000020468	upf3a	99	84.067	ENSCVAG00000022333	upf3a	98	84.067	Cyprinodon_variegatus
ENSACIG00000020468	upf3a	99	78.361	ENSDARG00000069297	upf3a	99	78.197	Danio_rerio
ENSACIG00000020468	upf3a	70	83.810	ENSDNOG00000034391	UPF3A	90	60.401	Dasypus_novemcinctus
ENSACIG00000020468	upf3a	93	49.485	ENSETEG00000010110	UPF3A	96	49.485	Echinops_telfairi
ENSACIG00000020468	upf3a	71	83.019	ENSEASG00005021884	UPF3A	88	54.853	Equus_asinus_asinus
ENSACIG00000020468	upf3a	83	66.129	ENSEASG00005012919	UPF3B	62	69.565	Equus_asinus_asinus
ENSACIG00000020468	upf3a	83	66.129	ENSECAG00000016947	UPF3B	62	62.857	Equus_caballus
ENSACIG00000020468	upf3a	99	80.705	ENSELUG00000011050	upf3a	99	80.538	Esox_lucius
ENSACIG00000020468	upf3a	78	77.586	ENSFCAG00000014602	UPF3A	92	55.172	Felis_catus
ENSACIG00000020468	upf3a	94	75.714	ENSFHEG00000010418	upf3a	84	86.364	Fundulus_heteroclitus
ENSACIG00000020468	upf3a	75	83.929	ENSGALG00000016815	-	91	70.984	Gallus_gallus
ENSACIG00000020468	upf3a	99	85.325	ENSGAFG00000021170	upf3a	98	85.325	Gambusia_affinis
ENSACIG00000020468	upf3a	70	95.238	ENSGACG00000001972	upf3a	100	84.062	Gasterosteus_aculeatus
ENSACIG00000020468	upf3a	70	75.238	ENSGACG00000017435	upf3b	60	71.341	Gasterosteus_aculeatus
ENSACIG00000020468	upf3a	70	86.538	ENSGAGG00000001952	UPF3A	81	84.507	Gopherus_agassizii
ENSACIG00000020468	upf3a	90	43.607	ENSGGOG00000043074	-	80	44.363	Gorilla_gorilla
ENSACIG00000020468	upf3a	82	46.348	ENSGGOG00000041219	-	85	44.581	Gorilla_gorilla
ENSACIG00000020468	upf3a	83	66.129	ENSGGOG00000023995	UPF3B	58	71.681	Gorilla_gorilla
ENSACIG00000020468	upf3a	70	80.952	ENSGGOG00000015428	UPF3A	90	54.730	Gorilla_gorilla
ENSACIG00000020468	upf3a	99	93.697	ENSHBUG00000011325	upf3a	98	93.697	Haplochromis_burtoni
ENSACIG00000020468	upf3a	70	74.286	ENSHGLG00000001544	UPF3A	50	66.351	Heterocephalus_glaber_female
ENSACIG00000020468	upf3a	70	74.286	ENSHGLG00100013244	UPF3A	50	66.351	Heterocephalus_glaber_male
ENSACIG00000020468	upf3a	96	77.155	ENSHCOG00000013985	upf3a	95	77.586	Hippocampus_comes
ENSACIG00000020468	upf3a	99	77.101	ENSIPUG00000023450	upf3a	99	76.939	Ictalurus_punctatus
ENSACIG00000020468	upf3a	70	78.095	ENSSTOG00000030282	-	95	60.619	Ictidomys_tridecemlineatus
ENSACIG00000020468	upf3a	70	80.000	ENSJJAG00000018099	-	77	70.909	Jaculus_jaculus
ENSACIG00000020468	upf3a	99	89.099	ENSKMAG00000004381	upf3a	98	89.099	Kryptolebias_marmoratus
ENSACIG00000020468	upf3a	99	85.115	ENSLBEG00000021570	upf3a	99	84.486	Labrus_bergylta
ENSACIG00000020468	upf3a	68	39.898	ENSLACG00000006645	UPF3A	74	87.500	Latimeria_chalumnae
ENSACIG00000020468	upf3a	98	72.594	ENSLOCG00000002665	upf3a	98	72.594	Lepisosteus_oculatus
ENSACIG00000020468	upf3a	83	66.129	ENSMFAG00000045414	UPF3B	77	70.303	Macaca_fascicularis
ENSACIG00000020468	upf3a	70	82.857	ENSMFAG00000045016	UPF3A	95	53.105	Macaca_fascicularis
ENSACIG00000020468	upf3a	85	53.676	ENSMFAG00000045275	-	90	57.527	Macaca_fascicularis
ENSACIG00000020468	upf3a	83	66.129	ENSMMUG00000020222	UPF3B	77	70.303	Macaca_mulatta
ENSACIG00000020468	upf3a	87	68.462	ENSMMUG00000007449	UPF3A	95	54.565	Macaca_mulatta
ENSACIG00000020468	upf3a	70	57.018	ENSMMUG00000046682	-	90	55.080	Macaca_mulatta
ENSACIG00000020468	upf3a	70	82.857	ENSMNEG00000036402	UPF3A	83	56.770	Macaca_nemestrina
ENSACIG00000020468	upf3a	85	53.676	ENSMNEG00000040898	-	90	56.989	Macaca_nemestrina
ENSACIG00000020468	upf3a	83	66.129	ENSMNEG00000039794	UPF3B	77	70.303	Macaca_nemestrina
ENSACIG00000020468	upf3a	83	66.129	ENSMLEG00000010999	UPF3B	77	70.303	Mandrillus_leucophaeus
ENSACIG00000020468	upf3a	70	82.857	ENSMLEG00000014726	UPF3A	94	56.295	Mandrillus_leucophaeus
ENSACIG00000020468	upf3a	99	92.437	ENSMAMG00000018364	upf3a	98	92.437	Mastacembelus_armatus
ENSACIG00000020468	upf3a	99	95.588	ENSMZEG00005021571	upf3a	98	95.588	Maylandia_zebra
ENSACIG00000020468	upf3a	58	88.506	ENSMGAG00000014837	UPF3A	98	60.427	Meleagris_gallopavo
ENSACIG00000020468	upf3a	56	69.048	ENSMICG00000042420	-	82	55.906	Microcebus_murinus
ENSACIG00000020468	upf3a	83	66.129	ENSMICG00000001743	UPF3B	51	70.732	Microcebus_murinus
ENSACIG00000020468	upf3a	79	72.650	ENSMOCG00000000550	Upf3a	57	69.307	Microtus_ochrogaster
ENSACIG00000020468	upf3a	99	90.105	ENSMMOG00000019751	upf3a	98	90.105	Mola_mola
ENSACIG00000020468	upf3a	70	85.714	ENSMODG00000003159	UPF3A	93	63.895	Monodelphis_domestica
ENSACIG00000020468	upf3a	77	93.043	ENSMALG00000002454	-	64	93.043	Monopterus_albus
ENSACIG00000020468	upf3a	79	72.034	MGP_PahariEiJ_G0021311	Upf3a	88	58.886	Mus_pahari
ENSACIG00000020468	upf3a	70	79.048	ENSMPUG00000009139	UPF3A	90	54.367	Mustela_putorius_furo
ENSACIG00000020468	upf3a	70	79.817	ENSMLUG00000015905	UPF3A	92	57.524	Myotis_lucifugus
ENSACIG00000020468	upf3a	87	65.385	ENSNGAG00000019314	Upf3a	54	63.158	Nannospalax_galili
ENSACIG00000020468	upf3a	99	93.277	ENSNBRG00000000828	upf3a	98	93.277	Neolamprologus_brichardi
ENSACIG00000020468	upf3a	70	74.286	ENSNBRG00000011560	upf3b	76	75.000	Neolamprologus_brichardi
ENSACIG00000020468	upf3a	88	51.145	ENSNLEG00000027516	-	78	59.146	Nomascus_leucogenys
ENSACIG00000020468	upf3a	70	80.000	ENSNLEG00000007563	UPF3A	90	55.056	Nomascus_leucogenys
ENSACIG00000020468	upf3a	83	66.129	ENSNLEG00000014897	UPF3B	60	71.681	Nomascus_leucogenys
ENSACIG00000020468	upf3a	69	60.194	ENSODEG00000006064	-	90	56.425	Octodon_degus
ENSACIG00000020468	upf3a	70	76.190	ENSODEG00000009176	-	59	74.497	Octodon_degus
ENSACIG00000020468	upf3a	52	62.025	ENSODEG00000000596	-	67	59.398	Octodon_degus
ENSACIG00000020468	upf3a	88	51.852	ENSODEG00000007164	-	75	54.749	Octodon_degus
ENSACIG00000020468	upf3a	99	92.902	ENSONIG00000006817	upf3a	98	92.902	Oreochromis_niloticus
ENSACIG00000020468	upf3a	74	56.640	ENSOANG00000006985	-	95	56.640	Ornithorhynchus_anatinus
ENSACIG00000020468	upf3a	99	84.244	ENSORLG00000010911	upf3a	98	84.244	Oryzias_latipes
ENSACIG00000020468	upf3a	70	72.381	ENSORLG00020003758	upf3b	56	62.573	Oryzias_latipes_hni
ENSACIG00000020468	upf3a	99	81.933	ENSORLG00020014317	upf3a	98	81.933	Oryzias_latipes_hni
ENSACIG00000020468	upf3a	99	82.773	ENSORLG00015017339	upf3a	57	82.773	Oryzias_latipes_hsok
ENSACIG00000020468	upf3a	99	85.294	ENSOMEG00000014425	upf3a	98	85.294	Oryzias_melastigma
ENSACIG00000020468	upf3a	70	80.000	ENSOGAG00000004788	UPF3A	83	61.919	Otolemur_garnettii
ENSACIG00000020468	upf3a	70	80.189	ENSOARG00000009004	UPF3A	84	55.189	Ovis_aries
ENSACIG00000020468	upf3a	70	80.952	ENSPPAG00000042267	UPF3A	91	54.084	Pan_paniscus
ENSACIG00000020468	upf3a	83	66.129	ENSPPAG00000040390	UPF3B	58	71.681	Pan_paniscus
ENSACIG00000020468	upf3a	78	77.586	ENSPPRG00000025062	UPF3A	92	54.957	Panthera_pardus
ENSACIG00000020468	upf3a	83	66.129	ENSPTIG00000015264	UPF3B	52	70.732	Panthera_tigris_altaica
ENSACIG00000020468	upf3a	54	74.074	ENSPTRG00000041187	-	85	42.611	Pan_troglodytes
ENSACIG00000020468	upf3a	83	66.129	ENSPTRG00000022228	UPF3B	58	71.681	Pan_troglodytes
ENSACIG00000020468	upf3a	70	81.731	ENSPTRG00000006073	UPF3A	90	54.084	Pan_troglodytes
ENSACIG00000020468	upf3a	54	72.840	ENSPTRG00000051640	-	85	41.133	Pan_troglodytes
ENSACIG00000020468	upf3a	83	66.129	ENSPANG00000000900	UPF3B	77	70.303	Papio_anubis
ENSACIG00000020468	upf3a	84	51.493	ENSPANG00000029350	-	88	56.906	Papio_anubis
ENSACIG00000020468	upf3a	70	81.905	ENSPANG00000004346	UPF3A	95	54.701	Papio_anubis
ENSACIG00000020468	upf3a	99	71.370	ENSPKIG00000004422	upf3a	99	71.370	Paramormyrops_kingsleyae
ENSACIG00000020468	upf3a	84	70.400	ENSPKIG00000019226	upf3b	86	68.085	Paramormyrops_kingsleyae
ENSACIG00000020468	upf3a	70	86.667	ENSPSIG00000007468	UPF3A	96	63.549	Pelodiscus_sinensis
ENSACIG00000020468	upf3a	99	84.298	ENSPMGG00000012696	upf3a	98	84.647	Periophthalmus_magnuspinnatus
ENSACIG00000020468	upf3a	69	74.757	ENSPMGG00000016067	upf3b	59	69.939	Periophthalmus_magnuspinnatus
ENSACIG00000020468	upf3a	70	85.714	ENSPCIG00000019590	-	90	69.417	Phascolarctos_cinereus
ENSACIG00000020468	upf3a	99	85.924	ENSPFOG00000013222	upf3a	98	85.924	Poecilia_formosa
ENSACIG00000020468	upf3a	99	84.906	ENSPLAG00000011960	upf3a	99	84.906	Poecilia_latipinna
ENSACIG00000020468	upf3a	99	86.820	ENSPMEG00000000836	upf3a	98	86.820	Poecilia_mexicana
ENSACIG00000020468	upf3a	74	71.429	ENSPREG00000012214	upf3b	76	73.451	Poecilia_reticulata
ENSACIG00000020468	upf3a	93	76.812	ENSPREG00000005566	upf3a	89	88.816	Poecilia_reticulata
ENSACIG00000020468	upf3a	83	66.129	ENSPPYG00000020675	-	50	70.732	Pongo_abelii
ENSACIG00000020468	upf3a	70	80.000	ENSPPYG00000005536	UPF3A	90	54.525	Pongo_abelii
ENSACIG00000020468	upf3a	83	66.129	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSACIG00000020468	upf3a	70	77.885	ENSPVAG00000005656	UPF3A	82	52.315	Pteropus_vampyrus
ENSACIG00000020468	upf3a	99	95.588	ENSPNYG00000011289	upf3a	98	95.588	Pundamilia_nyererei
ENSACIG00000020468	upf3a	83	70.161	ENSPNAG00000021528	upf3b	58	69.714	Pygocentrus_nattereri
ENSACIG00000020468	upf3a	99	78.407	ENSPNAG00000019532	upf3a	99	78.407	Pygocentrus_nattereri
ENSACIG00000020468	upf3a	70	79.048	ENSRNOG00000017397	Upf3a	81	63.253	Rattus_norvegicus
ENSACIG00000020468	upf3a	70	82.692	ENSRBIG00000034007	UPF3A	93	55.275	Rhinopithecus_bieti
ENSACIG00000020468	upf3a	83	66.129	ENSRROG00000041031	UPF3B	77	70.303	Rhinopithecus_roxellana
ENSACIG00000020468	upf3a	70	82.692	ENSRROG00000012212	UPF3A	85	56.429	Rhinopithecus_roxellana
ENSACIG00000020468	upf3a	83	65.323	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSACIG00000020468	upf3a	76	53.728	ENSSBOG00000029989	UPF3A	95	47.844	Saimiri_boliviensis_boliviensis
ENSACIG00000020468	upf3a	71	85.849	ENSSHAG00000009895	UPF3A	94	64.115	Sarcophilus_harrisii
ENSACIG00000020468	upf3a	99	69.118	ENSSFOG00015021851	upf3a	99	68.134	Scleropages_formosus
ENSACIG00000020468	upf3a	70	77.143	ENSSMAG00000012913	upf3b	54	73.171	Scophthalmus_maximus
ENSACIG00000020468	upf3a	99	87.090	ENSSMAG00000003858	upf3a	98	88.320	Scophthalmus_maximus
ENSACIG00000020468	upf3a	99	93.908	ENSSDUG00000009680	upf3a	98	94.118	Seriola_dumerili
ENSACIG00000020468	upf3a	99	92.227	ENSSLDG00000009700	upf3a	98	92.227	Seriola_lalandi_dorsalis
ENSACIG00000020468	upf3a	99	93.277	ENSSPAG00000007938	upf3a	98	92.887	Stegastes_partitus
ENSACIG00000020468	upf3a	79	79.487	ENSTGUG00000009493	UPF3A	99	64.423	Taeniopygia_guttata
ENSACIG00000020468	upf3a	99	82.983	ENSTRUG00000012730	upf3a	99	82.983	Takifugu_rubripes
ENSACIG00000020468	upf3a	79	83.051	ENSTNIG00000014973	upf3a	100	73.012	Tetraodon_nigroviridis
ENSACIG00000020468	upf3a	83	66.129	ENSUAMG00000024565	UPF3B	66	63.750	Ursus_americanus
ENSACIG00000020468	upf3a	83	66.129	ENSVVUG00000011594	UPF3B	83	66.854	Vulpes_vulpes
ENSACIG00000020468	upf3a	70	74.286	ENSXETG00000007440	upf3b	71	71.341	Xenopus_tropicalis
ENSACIG00000020468	upf3a	78	81.034	ENSXETG00000002572	upf3a	91	56.235	Xenopus_tropicalis
ENSACIG00000020468	upf3a	74	72.321	ENSXCOG00000016586	upf3b	83	71.687	Xiphophorus_couchianus
ENSACIG00000020468	upf3a	99	85.954	ENSXMAG00000013452	upf3a	98	85.954	Xiphophorus_maculatus