EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000020672 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 4594 bases
Position: chrCCOE01000977.1:2022453-2027046
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000026716	PRP21_like_P	PF12230.8	2.5e-52	1	1
ENSACIP00000026716	Surp	PF01805.20	5.7e-46	1	2
ENSACIP00000026716	Surp	PF01805.20	5.7e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000027413	-	2361	-	ENSACIP00000026716	786 (aa)	-	-

Gene Model

Click here to download ENSACIG00000020672's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000020672's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000020672	sf3a1	98	85.938	ENSG00000099995	SF3A1	100	84.528	Homo_sapiens
ENSACIG00000020672	sf3a1	100	96.819	ENSAPOG00000020465	sf3a1	100	96.819	Acanthochromis_polyacanthus
ENSACIG00000020672	sf3a1	98	85.807	ENSAMEG00000007737	SF3A1	100	84.065	Ailuropoda_melanoleuca
ENSACIG00000020672	sf3a1	100	96.692	ENSAOCG00000003060	sf3a1	100	96.692	Amphiprion_ocellaris
ENSACIG00000020672	sf3a1	100	96.819	ENSAPEG00000010735	sf3a1	100	96.819	Amphiprion_percula
ENSACIG00000020672	sf3a1	97	96.340	ENSATEG00000021201	sf3a1	96	96.340	Anabas_testudineus
ENSACIG00000020672	sf3a1	96	84.453	ENSAPLG00000009057	SF3A1	100	84.802	Anas_platyrhynchos
ENSACIG00000020672	sf3a1	100	81.605	ENSACAG00000009415	SF3A1	100	81.852	Anolis_carolinensis
ENSACIG00000020672	sf3a1	98	85.938	ENSANAG00000032045	SF3A1	100	84.528	Aotus_nancymaae
ENSACIG00000020672	sf3a1	100	97.074	ENSACLG00000012622	sf3a1	100	97.074	Astatotilapia_calliptera
ENSACIG00000020672	sf3a1	99	88.662	ENSAMXG00000005382	sf3a1	99	88.917	Astyanax_mexicanus
ENSACIG00000020672	sf3a1	99	84.910	ENSBTAG00000003390	SF3A1	100	84.277	Bos_taurus
ENSACIG00000020672	sf3a1	81	45.849	WBGene00004188	prp-21	59	51.525	Caenorhabditis_elegans
ENSACIG00000020672	sf3a1	98	85.807	ENSCJAG00000010370	SF3A1	100	84.403	Callithrix_jacchus
ENSACIG00000020672	sf3a1	99	84.910	ENSCAFG00000012559	SF3A1	100	84.277	Canis_familiaris
ENSACIG00000020672	sf3a1	99	84.910	ENSCAFG00020000838	SF3A1	100	84.277	Canis_lupus_dingo
ENSACIG00000020672	sf3a1	99	85.038	ENSCHIG00000018642	SF3A1	100	84.403	Capra_hircus
ENSACIG00000020672	sf3a1	98	86.068	ENSTSYG00000004739	SF3A1	100	84.528	Carlito_syrichta
ENSACIG00000020672	sf3a1	95	69.241	ENSCAPG00000015414	SF3A1	98	69.640	Cavia_aperea
ENSACIG00000020672	sf3a1	99	84.910	ENSCPOG00000014589	SF3A1	100	84.277	Cavia_porcellus
ENSACIG00000020672	sf3a1	98	85.938	ENSCCAG00000032006	SF3A1	100	84.528	Cebus_capucinus
ENSACIG00000020672	sf3a1	99	85.038	ENSCATG00000029241	SF3A1	100	84.528	Cercocebus_atys
ENSACIG00000020672	sf3a1	98	85.807	ENSCLAG00000006508	SF3A1	100	84.277	Chinchilla_lanigera
ENSACIG00000020672	sf3a1	98	85.938	ENSCSAG00000009470	SF3A1	100	84.528	Chlorocebus_sabaeus
ENSACIG00000020672	sf3a1	59	89.434	ENSCHOG00000005201	SF3A1	63	88.889	Choloepus_hoffmanni
ENSACIG00000020672	sf3a1	100	81.967	ENSCPBG00000007595	SF3A1	100	82.598	Chrysemys_picta_bellii
ENSACIG00000020672	sf3a1	87	67.029	ENSCSAVG00000005608	-	92	65.854	Ciona_savignyi
ENSACIG00000020672	sf3a1	98	85.938	ENSCANG00000033564	SF3A1	100	84.528	Colobus_angolensis_palliatus
ENSACIG00000020672	sf3a1	97	86.316	ENSCGRG00001008933	Sf3a1	100	84.277	Cricetulus_griseus_chok1gshd
ENSACIG00000020672	sf3a1	97	86.316	ENSCGRG00000006127	Sf3a1	100	84.277	Cricetulus_griseus_crigri
ENSACIG00000020672	sf3a1	100	91.624	ENSCSEG00000010792	sf3a1	100	90.990	Cynoglossus_semilaevis
ENSACIG00000020672	sf3a1	100	93.393	ENSCVAG00000004560	sf3a1	100	93.393	Cyprinodon_variegatus
ENSACIG00000020672	sf3a1	100	86.929	ENSDARG00000041887	sf3a1	100	90.341	Danio_rerio
ENSACIG00000020672	sf3a1	98	86.216	ENSDNOG00000010629	SF3A1	98	85.044	Dasypus_novemcinctus
ENSACIG00000020672	sf3a1	99	85.038	ENSDORG00000005613	Sf3a1	100	84.403	Dipodomys_ordii
ENSACIG00000020672	sf3a1	83	61.394	FBgn0266917	Sf3a1	87	66.667	Drosophila_melanogaster
ENSACIG00000020672	sf3a1	85	84.604	ENSETEG00000017194	SF3A1	95	85.650	Echinops_telfairi
ENSACIG00000020672	sf3a1	98	66.626	ENSEBUG00000001285	sf3a1	96	68.148	Eptatretus_burgeri
ENSACIG00000020672	sf3a1	98	85.807	ENSEASG00005010254	SF3A1	100	84.277	Equus_asinus_asinus
ENSACIG00000020672	sf3a1	98	85.807	ENSECAG00000023962	SF3A1	100	84.277	Equus_caballus
ENSACIG00000020672	sf3a1	74	90.164	ENSEEUG00000003159	SF3A1	83	90.164	Erinaceus_europaeus
ENSACIG00000020672	sf3a1	100	87.326	ENSELUG00000022578	sf3a1	100	87.199	Esox_lucius
ENSACIG00000020672	sf3a1	99	84.783	ENSFCAG00000011932	SF3A1	100	84.151	Felis_catus
ENSACIG00000020672	sf3a1	96	84.037	ENSFALG00000006944	SF3A1	100	83.627	Ficedula_albicollis
ENSACIG00000020672	sf3a1	98	85.938	ENSFDAG00000009560	SF3A1	100	84.403	Fukomys_damarensis
ENSACIG00000020672	sf3a1	100	94.155	ENSFHEG00000010866	sf3a1	100	94.155	Fundulus_heteroclitus
ENSACIG00000020672	sf3a1	100	88.041	ENSGMOG00000016024	sf3a1	100	87.659	Gadus_morhua
ENSACIG00000020672	sf3a1	96	84.565	ENSGALG00000007937	SF3A1	100	84.005	Gallus_gallus
ENSACIG00000020672	sf3a1	100	94.409	ENSGAFG00000009111	sf3a1	100	94.409	Gambusia_affinis
ENSACIG00000020672	sf3a1	100	90.657	ENSGACG00000011893	sf3a1	100	90.152	Gasterosteus_aculeatus
ENSACIG00000020672	sf3a1	96	81.711	ENSGAGG00000000762	SF3A1	99	82.105	Gopherus_agassizii
ENSACIG00000020672	sf3a1	98	85.938	ENSGGOG00000012631	SF3A1	100	84.528	Gorilla_gorilla
ENSACIG00000020672	sf3a1	100	97.201	ENSHBUG00000015795	sf3a1	100	97.201	Haplochromis_burtoni
ENSACIG00000020672	sf3a1	99	85.038	ENSHGLG00000007907	SF3A1	100	84.403	Heterocephalus_glaber_female
ENSACIG00000020672	sf3a1	99	85.038	ENSHGLG00100013799	SF3A1	100	84.403	Heterocephalus_glaber_male
ENSACIG00000020672	sf3a1	100	89.454	ENSHCOG00000015423	sf3a1	100	89.199	Hippocampus_comes
ENSACIG00000020672	sf3a1	98	86.269	ENSIPUG00000002470	sf3a1	99	86.788	Ictalurus_punctatus
ENSACIG00000020672	sf3a1	99	85.038	ENSSTOG00000013892	SF3A1	100	84.654	Ictidomys_tridecemlineatus
ENSACIG00000020672	sf3a1	98	85.807	ENSJJAG00000022566	Sf3a1	100	84.020	Jaculus_jaculus
ENSACIG00000020672	sf3a1	100	94.275	ENSKMAG00000002400	sf3a1	100	94.275	Kryptolebias_marmoratus
ENSACIG00000020672	sf3a1	100	93.130	ENSLBEG00000022974	sf3a1	100	92.748	Labrus_bergylta
ENSACIG00000020672	sf3a1	100	83.818	ENSLACG00000003565	SF3A1	100	83.838	Latimeria_chalumnae
ENSACIG00000020672	sf3a1	100	88.228	ENSLOCG00000008251	sf3a1	99	88.608	Lepisosteus_oculatus
ENSACIG00000020672	sf3a1	98	56.633	ENSLAFG00000026032	-	97	54.949	Loxodonta_africana
ENSACIG00000020672	sf3a1	99	85.678	ENSLAFG00000000448	SF3A1	100	84.654	Loxodonta_africana
ENSACIG00000020672	sf3a1	98	85.807	ENSMFAG00000031979	SF3A1	100	84.403	Macaca_fascicularis
ENSACIG00000020672	sf3a1	98	85.807	ENSMMUG00000005547	SF3A1	100	84.403	Macaca_mulatta
ENSACIG00000020672	sf3a1	98	85.938	ENSMNEG00000037229	SF3A1	100	84.528	Macaca_nemestrina
ENSACIG00000020672	sf3a1	98	85.938	ENSMLEG00000041908	SF3A1	100	84.528	Mandrillus_leucophaeus
ENSACIG00000020672	sf3a1	98	95.331	ENSMAMG00000006460	sf3a1	96	95.331	Mastacembelus_armatus
ENSACIG00000020672	sf3a1	100	97.074	ENSMZEG00005009633	sf3a1	100	97.074	Maylandia_zebra
ENSACIG00000020672	sf3a1	96	84.565	ENSMGAG00000001330	SF3A1	100	84.981	Meleagris_gallopavo
ENSACIG00000020672	sf3a1	93	82.289	ENSMAUG00000020317	Sf3a1	100	78.734	Mesocricetus_auratus
ENSACIG00000020672	sf3a1	99	85.038	ENSMICG00000010038	SF3A1	100	83.522	Microcebus_murinus
ENSACIG00000020672	sf3a1	98	85.807	ENSMOCG00000008438	Sf3a1	100	84.277	Microtus_ochrogaster
ENSACIG00000020672	sf3a1	100	90.840	ENSMMOG00000015588	sf3a1	99	91.603	Mola_mola
ENSACIG00000020672	sf3a1	99	83.805	ENSMODG00000009270	SF3A1	100	83.879	Monodelphis_domestica
ENSACIG00000020672	sf3a1	100	94.289	ENSMALG00000000148	sf3a1	100	94.670	Monopterus_albus
ENSACIG00000020672	sf3a1	98	85.677	MGP_CAROLIEiJ_G0016029	Sf3a1	99	84.586	Mus_caroli
ENSACIG00000020672	sf3a1	98	85.677	ENSMUSG00000002129	Sf3a1	99	84.586	Mus_musculus
ENSACIG00000020672	sf3a1	98	85.677	MGP_PahariEiJ_G0016862	Sf3a1	99	84.586	Mus_pahari
ENSACIG00000020672	sf3a1	98	85.677	MGP_SPRETEiJ_G0016870	Sf3a1	99	84.586	Mus_spretus
ENSACIG00000020672	sf3a1	99	85.038	ENSMPUG00000013144	SF3A1	100	84.277	Mustela_putorius_furo
ENSACIG00000020672	sf3a1	98	85.807	ENSMLUG00000002139	SF3A1	100	84.277	Myotis_lucifugus
ENSACIG00000020672	sf3a1	99	85.038	ENSNGAG00000016977	Sf3a1	100	84.277	Nannospalax_galili
ENSACIG00000020672	sf3a1	100	96.193	ENSNBRG00000016642	sf3a1	100	96.193	Neolamprologus_brichardi
ENSACIG00000020672	sf3a1	98	85.938	ENSNLEG00000003686	SF3A1	100	84.528	Nomascus_leucogenys
ENSACIG00000020672	sf3a1	98	86.198	ENSOPRG00000016636	SF3A1	100	84.654	Ochotona_princeps
ENSACIG00000020672	sf3a1	98	85.696	ENSODEG00000002571	SF3A1	100	84.257	Octodon_degus
ENSACIG00000020672	sf3a1	100	97.328	ENSONIG00000010848	sf3a1	100	97.328	Oreochromis_niloticus
ENSACIG00000020672	sf3a1	98	85.807	ENSOCUG00000007633	SF3A1	100	84.277	Oryctolagus_cuniculus
ENSACIG00000020672	sf3a1	96	93.758	ENSORLG00000013050	sf3a1	99	93.493	Oryzias_latipes
ENSACIG00000020672	sf3a1	99	91.037	ENSORLG00020003236	sf3a1	97	91.355	Oryzias_latipes_hni
ENSACIG00000020672	sf3a1	100	93.384	ENSORLG00015017411	sf3a1	100	93.130	Oryzias_latipes_hsok
ENSACIG00000020672	sf3a1	100	93.639	ENSOMEG00000013362	sf3a1	100	93.384	Oryzias_melastigma
ENSACIG00000020672	sf3a1	98	85.938	ENSOGAG00000012931	SF3A1	100	84.528	Otolemur_garnettii
ENSACIG00000020672	sf3a1	99	83.504	ENSOARG00000006849	SF3A1	100	82.390	Ovis_aries
ENSACIG00000020672	sf3a1	98	85.156	ENSPPAG00000041790	SF3A1	100	83.774	Pan_paniscus
ENSACIG00000020672	sf3a1	99	84.783	ENSPPRG00000004391	SF3A1	100	84.151	Panthera_pardus
ENSACIG00000020672	sf3a1	98	85.547	ENSPTIG00000000844	SF3A1	99	85.548	Panthera_tigris_altaica
ENSACIG00000020672	sf3a1	98	85.938	ENSPTRG00000014240	SF3A1	100	84.528	Pan_troglodytes
ENSACIG00000020672	sf3a1	98	85.938	ENSPANG00000020772	SF3A1	100	84.528	Papio_anubis
ENSACIG00000020672	sf3a1	82	90.110	ENSPSIG00000012803	SF3A1	98	90.110	Pelodiscus_sinensis
ENSACIG00000020672	sf3a1	97	90.850	ENSPMGG00000023096	sf3a1	100	90.980	Periophthalmus_magnuspinnatus
ENSACIG00000020672	sf3a1	97	86.447	ENSPEMG00000009494	Sf3a1	100	84.403	Peromyscus_maniculatus_bairdii
ENSACIG00000020672	sf3a1	69	77.737	ENSPMAG00000007139	-	100	71.901	Petromyzon_marinus
ENSACIG00000020672	sf3a1	98	85.528	ENSPCIG00000022692	SF3A1	100	84.005	Phascolarctos_cinereus
ENSACIG00000020672	sf3a1	100	84.478	ENSPFOG00000016768	sf3a1	100	84.478	Poecilia_formosa
ENSACIG00000020672	sf3a1	100	95.299	ENSPLAG00000017268	sf3a1	100	95.299	Poecilia_latipinna
ENSACIG00000020672	sf3a1	96	95.188	ENSPMEG00000019811	sf3a1	100	95.188	Poecilia_mexicana
ENSACIG00000020672	sf3a1	100	95.044	ENSPREG00000010347	sf3a1	100	95.044	Poecilia_reticulata
ENSACIG00000020672	sf3a1	98	85.938	ENSPPYG00000011707	SF3A1	100	84.528	Pongo_abelii
ENSACIG00000020672	sf3a1	58	84.711	ENSPCAG00000003266	SF3A1	57	84.711	Procavia_capensis
ENSACIG00000020672	sf3a1	99	84.783	ENSPCOG00000026630	SF3A1	100	83.270	Propithecus_coquereli
ENSACIG00000020672	sf3a1	95	85.408	ENSPVAG00000017719	SF3A1	94	85.810	Pteropus_vampyrus
ENSACIG00000020672	sf3a1	100	96.947	ENSPNYG00000018706	sf3a1	100	96.947	Pundamilia_nyererei
ENSACIG00000020672	sf3a1	99	89.682	ENSPNAG00000003721	sf3a1	99	89.427	Pygocentrus_nattereri
ENSACIG00000020672	sf3a1	98	85.382	ENSRNOG00000005218	Sf3a1	99	84.625	Rattus_norvegicus
ENSACIG00000020672	sf3a1	98	85.938	ENSRBIG00000032167	SF3A1	100	84.528	Rhinopithecus_bieti
ENSACIG00000020672	sf3a1	98	85.938	ENSRROG00000044908	SF3A1	100	84.528	Rhinopithecus_roxellana
ENSACIG00000020672	sf3a1	94	86.122	ENSSBOG00000021960	SF3A1	98	86.677	Saimiri_boliviensis_boliviensis
ENSACIG00000020672	sf3a1	100	81.091	ENSSHAG00000003666	SF3A1	99	82.107	Sarcophilus_harrisii
ENSACIG00000020672	sf3a1	100	89.886	ENSSFOG00015004579	sf3a1	100	90.771	Scleropages_formosus
ENSACIG00000020672	sf3a1	100	91.094	ENSSMAG00000004275	sf3a1	100	90.331	Scophthalmus_maximus
ENSACIG00000020672	sf3a1	100	96.183	ENSSDUG00000022219	sf3a1	100	96.183	Seriola_dumerili
ENSACIG00000020672	sf3a1	100	96.183	ENSSLDG00000012642	sf3a1	100	96.183	Seriola_lalandi_dorsalis
ENSACIG00000020672	sf3a1	98	82.812	ENSSARG00000005960	SF3A1	99	82.665	Sorex_araneus
ENSACIG00000020672	sf3a1	97	84.026	ENSSPUG00000018863	SF3A1	100	82.192	Sphenodon_punctatus
ENSACIG00000020672	sf3a1	100	96.692	ENSSPAG00000011856	sf3a1	100	96.692	Stegastes_partitus
ENSACIG00000020672	sf3a1	99	85.166	ENSSSCG00000010002	SF3A1	100	84.151	Sus_scrofa
ENSACIG00000020672	sf3a1	96	84.474	ENSTGUG00000010547	SF3A1	99	85.938	Taeniopygia_guttata
ENSACIG00000020672	sf3a1	100	89.313	ENSTRUG00000006118	sf3a1	100	89.313	Takifugu_rubripes
ENSACIG00000020672	sf3a1	62	86.989	ENSTNIG00000005713	sf3a1	88	89.381	Tetraodon_nigroviridis
ENSACIG00000020672	sf3a1	99	78.517	ENSTBEG00000012771	SF3A1	100	77.987	Tupaia_belangeri
ENSACIG00000020672	sf3a1	99	84.419	ENSTTRG00000001535	SF3A1	100	83.920	Tursiops_truncatus
ENSACIG00000020672	sf3a1	99	82.890	ENSUAMG00000006750	SF3A1	99	83.270	Ursus_americanus
ENSACIG00000020672	sf3a1	99	84.981	ENSUMAG00000016665	SF3A1	99	85.077	Ursus_maritimus
ENSACIG00000020672	sf3a1	99	84.910	ENSVVUG00000003075	SF3A1	100	84.277	Vulpes_vulpes
ENSACIG00000020672	sf3a1	100	79.073	ENSXETG00000016144	sf3a1	96	83.871	Xenopus_tropicalis
ENSACIG00000020672	sf3a1	100	94.409	ENSXCOG00000015653	sf3a1	100	94.409	Xiphophorus_couchianus
ENSACIG00000020672	sf3a1	100	94.663	ENSXMAG00000002753	sf3a1	100	94.663	Xiphophorus_maculatus