EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000021004 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 14433 bases
Position: chrCCOE01001023.1:1057520-1071952
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000027237	PABP	PF00658.18	7.5e-29	1	1
ENSACIP00000027220	PABP	PF00658.18	1e-28	1	1
ENSACIP00000027237	RRM_5	PF13893.6	3.5e-08	1	2
ENSACIP00000027237	RRM_5	PF13893.6	3.5e-08	2	2
ENSACIP00000027220	RRM_5	PF13893.6	5.9e-08	1	1
ENSACIP00000027220	RRM_1	PF00076.22	5.3e-88	1	4
ENSACIP00000027220	RRM_1	PF00076.22	5.3e-88	2	4
ENSACIP00000027220	RRM_1	PF00076.22	5.3e-88	3	4
ENSACIP00000027220	RRM_1	PF00076.22	5.3e-88	4	4
ENSACIP00000027237	RRM_1	PF00076.22	1.4e-81	1	4
ENSACIP00000027237	RRM_1	PF00076.22	1.4e-81	2	4
ENSACIP00000027237	RRM_1	PF00076.22	1.4e-81	3	4
ENSACIP00000027237	RRM_1	PF00076.22	1.4e-81	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000027953	-	1509	-	ENSACIP00000027237	502 (aa)	-	-
ENSACIT00000027936	-	1845	-	ENSACIP00000027220	614 (aa)	-	-

Gene Model

Click here to download ENSACIG00000021004's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000021004's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000021004	-	99	75.414	ENSACIG00000018366	pabpc1b	98	68.998
ENSACIG00000021004	-	68	39.241	ENSACIG00000000511	-	97	32.967
ENSACIG00000021004	-	59	30.612	ENSACIG00000003734	tial1	86	30.738
ENSACIG00000021004	-	67	37.079	ENSACIG00000018226	elavl1a	89	37.079
ENSACIG00000021004	-	59	37.209	ENSACIG00000015357	celf5a	61	37.113
ENSACIG00000021004	-	70	30.534	ENSACIG00000010855	ELAVL2	99	30.534
ENSACIG00000021004	-	71	35.789	ENSACIG00000021113	RBMS3	67	33.663
ENSACIG00000021004	-	85	31.250	ENSACIG00000021116	rbm39b	97	31.250
ENSACIG00000021004	-	75	34.884	ENSACIG00000010932	celf3a	77	34.884
ENSACIG00000021004	-	54	30.405	ENSACIG00000009234	rbm45	59	30.405
ENSACIG00000021004	-	60	31.548	ENSACIG00000014376	-	76	31.548
ENSACIG00000021004	-	60	35.616	ENSACIG00000004318	-	56	35.616
ENSACIG00000021004	-	70	36.095	ENSACIG00000018455	sf3b4	54	36.957
ENSACIG00000021004	-	67	35.417	ENSACIG00000013234	ncl	57	34.722
ENSACIG00000021004	-	75	34.884	ENSACIG00000007698	celf3b	83	34.247
ENSACIG00000021004	-	99	76.214	ENSACIG00000004685	pabpc1a	98	76.214
ENSACIG00000021004	-	71	35.789	ENSACIG00000021779	rbms2a	60	33.333
ENSACIG00000021004	-	80	31.111	ENSACIG00000017780	rbm19	75	31.111
ENSACIG00000021004	-	71	35.789	ENSACIG00000016186	rbms2b	82	35.789
ENSACIG00000021004	-	100	73.723	ENSACIG00000023343	pabpc4	98	66.773
ENSACIG00000021004	-	70	31.818	ENSACIG00000008793	elavl4	89	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000021004	-	99	80.220	ENSG00000101104	PABPC1L	98	76.543	Homo_sapiens
ENSACIG00000021004	-	99	88.350	ENSAPOG00000010842	pabpc1l	98	88.350	Acanthochromis_polyacanthus
ENSACIG00000021004	-	99	76.903	ENSAMEG00000004099	PABPC1L	100	64.110	Ailuropoda_melanoleuca
ENSACIG00000021004	-	100	88.660	ENSAOCG00000006167	-	100	85.486	Amphiprion_ocellaris
ENSACIG00000021004	-	100	89.867	ENSAPEG00000010558	-	100	88.389	Amphiprion_percula
ENSACIG00000021004	-	99	95.238	ENSATEG00000007428	pabpc1l	99	92.399	Anabas_testudineus
ENSACIG00000021004	-	99	76.596	ENSAPLG00000008415	PABPC1L	99	78.049	Anas_platyrhynchos
ENSACIG00000021004	-	99	79.024	ENSACAG00000011841	PABPC1L	99	73.768	Anolis_carolinensis
ENSACIG00000021004	-	99	69.266	ENSANAG00000026826	PABPC1L	98	69.266	Aotus_nancymaae
ENSACIG00000021004	-	100	94.076	ENSACLG00000024791	pabpc1l	100	93.620	Astatotilapia_calliptera
ENSACIG00000021004	-	100	81.368	ENSAMXG00000013552	pabpc1l	99	81.368	Astyanax_mexicanus
ENSACIG00000021004	-	72	86.014	ENSBTAG00000055300	-	100	86.905	Bos_taurus
ENSACIG00000021004	-	74	69.328	ENSBTAG00000016849	PABPC1L	87	63.103	Bos_taurus
ENSACIG00000021004	-	68	81.208	ENSCJAG00000038506	-	100	81.034	Callithrix_jacchus
ENSACIG00000021004	-	99	68.172	ENSCJAG00000017628	PABPC1L	99	67.468	Callithrix_jacchus
ENSACIG00000021004	-	99	70.227	ENSCAFG00000009573	PABPC1L	99	70.227	Canis_familiaris
ENSACIG00000021004	-	99	67.305	ENSCAFG00020013828	PABPC1L	99	67.305	Canis_lupus_dingo
ENSACIG00000021004	-	97	73.913	ENSCHIG00000025759	PABPC1L	90	73.913	Capra_hircus
ENSACIG00000021004	-	99	70.968	ENSTSYG00000006645	PABPC1L	98	70.968	Carlito_syrichta
ENSACIG00000021004	-	98	62.182	ENSCAPG00000014519	PABPC1L	99	65.000	Cavia_aperea
ENSACIG00000021004	-	99	66.815	ENSCPOG00000013633	PABPC1L	99	66.815	Cavia_porcellus
ENSACIG00000021004	-	99	80.220	ENSCCAG00000023338	PABPC1L	90	80.220	Cebus_capucinus
ENSACIG00000021004	-	99	78.022	ENSCATG00000034065	PABPC1L	98	70.183	Cercocebus_atys
ENSACIG00000021004	-	99	71.429	ENSCLAG00000005298	PABPC1L	99	64.506	Chinchilla_lanigera
ENSACIG00000021004	-	99	79.121	ENSCSAG00000014242	PABPC1L	98	69.954	Chlorocebus_sabaeus
ENSACIG00000021004	-	82	77.014	ENSCPBG00000017755	-	99	79.186	Chrysemys_picta_bellii
ENSACIG00000021004	-	68	85.496	ENSCPBG00000007810	-	91	85.496	Chrysemys_picta_bellii
ENSACIG00000021004	-	83	71.591	ENSCING00000002796	-	97	50.198	Ciona_intestinalis
ENSACIG00000021004	-	98	72.222	ENSCSAVG00000003102	-	100	85.714	Ciona_savignyi
ENSACIG00000021004	-	98	73.333	ENSCSAVG00000004246	-	96	64.734	Ciona_savignyi
ENSACIG00000021004	-	95	77.778	ENSCANG00000037530	PABPC1L	99	66.505	Colobus_angolensis_palliatus
ENSACIG00000021004	-	99	65.893	ENSCGRG00001021938	Pabpc1l	99	65.893	Cricetulus_griseus_chok1gshd
ENSACIG00000021004	-	99	65.893	ENSCGRG00000007946	Pabpc1l	99	65.893	Cricetulus_griseus_crigri
ENSACIG00000021004	-	100	81.750	ENSCSEG00000021295	pabpc1l	99	81.750	Cynoglossus_semilaevis
ENSACIG00000021004	-	100	93.204	ENSCVAG00000015943	-	99	96.947	Cyprinodon_variegatus
ENSACIG00000021004	-	99	81.754	ENSDARG00000002597	pabpc1l	88	95.385	Danio_rerio
ENSACIG00000021004	-	99	74.725	ENSDNOG00000048450	PABPC1L	99	67.949	Dasypus_novemcinctus
ENSACIG00000021004	-	99	68.998	ENSDORG00000001067	Pabpc1l	98	68.998	Dipodomys_ordii
ENSACIG00000021004	-	95	76.016	ENSETEG00000009969	PABPC1L	72	76.016	Echinops_telfairi
ENSACIG00000021004	-	63	74.843	ENSEASG00005023407	-	80	63.547	Equus_asinus_asinus
ENSACIG00000021004	-	72	83.916	ENSEASG00005023408	-	100	84.524	Equus_asinus_asinus
ENSACIG00000021004	-	79	66.816	ENSECAG00000040139	-	81	68.000	Equus_caballus
ENSACIG00000021004	-	99	72.549	ENSEEUG00000005978	PABPC1L	99	65.916	Erinaceus_europaeus
ENSACIG00000021004	-	100	82.670	ENSELUG00000001811	pabpc1l	99	82.670	Esox_lucius
ENSACIG00000021004	-	99	69.231	ENSFCAG00000011692	PABPC1L	98	69.231	Felis_catus
ENSACIG00000021004	-	85	75.058	ENSFALG00000005372	PABPC1L	97	67.474	Ficedula_albicollis
ENSACIG00000021004	-	99	64.763	ENSFDAG00000008291	PABPC1L	99	64.763	Fukomys_damarensis
ENSACIG00000021004	-	100	90.632	ENSFHEG00000003398	pabpc1l	99	90.632	Fundulus_heteroclitus
ENSACIG00000021004	-	99	87.409	ENSGMOG00000004437	pabpc1l	97	87.409	Gadus_morhua
ENSACIG00000021004	-	99	76.517	ENSGALG00000004123	PABPC1L	98	80.193	Gallus_gallus
ENSACIG00000021004	-	100	84.547	ENSGAFG00000021057	pabpc1l	99	84.547	Gambusia_affinis
ENSACIG00000021004	-	99	91.566	ENSGACG00000002792	pabpc1l	99	91.566	Gasterosteus_aculeatus
ENSACIG00000021004	-	99	76.526	ENSGAGG00000000589	PABPC1L	97	76.526	Gopherus_agassizii
ENSACIG00000021004	-	99	80.220	ENSGGOG00000004584	PABPC1L	98	68.849	Gorilla_gorilla
ENSACIG00000021004	-	100	94.313	ENSHBUG00000006134	pabpc1l	100	93.780	Haplochromis_burtoni
ENSACIG00000021004	-	100	70.803	ENSHGLG00000008434	PABPC1L	99	66.592	Heterocephalus_glaber_female
ENSACIG00000021004	-	100	70.803	ENSHGLG00100012151	PABPC1L	99	66.592	Heterocephalus_glaber_male
ENSACIG00000021004	-	69	87.582	ENSHGLG00100019506	-	100	87.079	Heterocephalus_glaber_male
ENSACIG00000021004	-	100	87.411	ENSHCOG00000009270	pabpc1l	100	87.411	Hippocampus_comes
ENSACIG00000021004	-	70	58.523	ENSIPUG00000006780	-	92	58.523	Ictalurus_punctatus
ENSACIG00000021004	-	70	60.843	ENSIPUG00000006760	-	90	62.011	Ictalurus_punctatus
ENSACIG00000021004	-	100	80.094	ENSIPUG00000012602	pabpc1l	100	79.107	Ictalurus_punctatus
ENSACIG00000021004	-	99	73.415	ENSSTOG00000003739	PABPC1L	99	73.415	Ictidomys_tridecemlineatus
ENSACIG00000021004	-	99	52.043	ENSJJAG00000022406	Pabpc1l	99	50.238	Jaculus_jaculus
ENSACIG00000021004	-	100	91.325	ENSKMAG00000016847	pabpc1l	99	91.325	Kryptolebias_marmoratus
ENSACIG00000021004	-	100	90.261	ENSLBEG00000010084	pabpc1l	99	90.261	Labrus_bergylta
ENSACIG00000021004	-	99	77.098	ENSLACG00000005762	PABPC1L	97	77.098	Latimeria_chalumnae
ENSACIG00000021004	-	99	82.151	ENSLOCG00000007519	pabpc1l	98	82.151	Lepisosteus_oculatus
ENSACIG00000021004	-	99	77.215	ENSLAFG00000003553	PABPC1L	100	66.879	Loxodonta_africana
ENSACIG00000021004	-	99	80.220	ENSMFAG00000040365	PABPC1L	98	70.183	Macaca_fascicularis
ENSACIG00000021004	-	97	79.747	ENSMNEG00000032298	PABPC1L	99	67.628	Macaca_nemestrina
ENSACIG00000021004	-	99	78.022	ENSMLEG00000043139	PABPC1L	98	70.183	Mandrillus_leucophaeus
ENSACIG00000021004	-	96	91.211	ENSMAMG00000011854	pabpc1l	97	91.211	Mastacembelus_armatus
ENSACIG00000021004	-	100	94.076	ENSMZEG00005023713	pabpc1l	100	93.620	Maylandia_zebra
ENSACIG00000021004	-	99	77.561	ENSMGAG00000003674	PABPC1L	98	77.561	Meleagris_gallopavo
ENSACIG00000021004	-	99	67.561	ENSMOCG00000013186	Pabpc1l	99	67.561	Microtus_ochrogaster
ENSACIG00000021004	-	99	90.499	ENSMMOG00000020574	-	99	87.299	Mola_mola
ENSACIG00000021004	-	96	74.048	ENSMODG00000016198	PABPC1L	98	74.048	Monodelphis_domestica
ENSACIG00000021004	-	96	93.120	ENSMALG00000021622	pabpc1l	99	93.120	Monopterus_albus
ENSACIG00000021004	-	99	65.287	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	60.350	Mus_caroli
ENSACIG00000021004	-	99	65.287	ENSMUSG00000054582	Pabpc1l	99	60.669	Mus_musculus
ENSACIG00000021004	-	100	65.287	MGP_PahariEiJ_G0026071	Pabpc1l	100	60.635	Mus_pahari
ENSACIG00000021004	-	99	65.287	MGP_SPRETEiJ_G0025549	Pabpc1l	99	60.350	Mus_spretus
ENSACIG00000021004	-	99	71.694	ENSMPUG00000017646	PABPC1L	98	71.694	Mustela_putorius_furo
ENSACIG00000021004	-	98	70.574	ENSMLUG00000006324	PABPC1L	96	70.574	Myotis_lucifugus
ENSACIG00000021004	-	99	65.179	ENSNGAG00000010458	Pabpc1l	99	65.179	Nannospalax_galili
ENSACIG00000021004	-	100	96.016	ENSNBRG00000016633	pabpc1l	100	96.016	Neolamprologus_brichardi
ENSACIG00000021004	-	90	65.399	ENSMEUG00000007905	-	89	65.399	Notamacropus_eugenii
ENSACIG00000021004	-	99	70.657	ENSOPRG00000011846	PABPC1L	99	70.657	Ochotona_princeps
ENSACIG00000021004	-	65	89.844	ENSODEG00000002920	-	97	81.250	Octodon_degus
ENSACIG00000021004	-	99	63.080	ENSODEG00000015482	PABPC1L	98	63.080	Octodon_degus
ENSACIG00000021004	-	100	94.313	ENSONIG00000017314	pabpc1l	100	93.939	Oreochromis_niloticus
ENSACIG00000021004	-	90	62.007	ENSOANG00000015793	-	100	62.007	Ornithorhynchus_anatinus
ENSACIG00000021004	-	99	75.824	ENSOCUG00000003005	PABPC1L	100	64.462	Oryctolagus_cuniculus
ENSACIG00000021004	-	98	91.646	ENSORLG00000010322	pabpc1l	100	89.109	Oryzias_latipes
ENSACIG00000021004	-	99	91.646	ENSORLG00020021193	pabpc1l	100	89.109	Oryzias_latipes_hni
ENSACIG00000021004	-	98	91.646	ENSORLG00015017018	pabpc1l	100	89.044	Oryzias_latipes_hsok
ENSACIG00000021004	-	100	85.780	ENSOMEG00000010789	pabpc1l	99	85.780	Oryzias_melastigma
ENSACIG00000021004	-	99	66.560	ENSOGAG00000032999	PABPC1L	99	66.560	Otolemur_garnettii
ENSACIG00000021004	-	99	73.430	ENSOARG00000004578	PABPC1L	98	73.430	Ovis_aries
ENSACIG00000021004	-	99	80.220	ENSPPAG00000039677	PABPC1L	98	69.074	Pan_paniscus
ENSACIG00000021004	-	72	65.886	ENSPPRG00000019327	-	98	67.901	Panthera_pardus
ENSACIG00000021004	-	99	69.231	ENSPTIG00000006524	PABPC1L	99	69.231	Panthera_tigris_altaica
ENSACIG00000021004	-	72	75.920	ENSPTRG00000013531	PABPC1L	98	76.852	Pan_troglodytes
ENSACIG00000021004	-	99	78.022	ENSPANG00000018788	PABPC1L	98	70.183	Papio_anubis
ENSACIG00000021004	-	60	85.849	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSACIG00000021004	-	100	81.818	ENSPKIG00000007322	pabpc1l	99	81.818	Paramormyrops_kingsleyae
ENSACIG00000021004	-	76	80.990	ENSPSIG00000013289	PABPC1L	99	80.622	Pelodiscus_sinensis
ENSACIG00000021004	-	72	93.636	ENSPMGG00000023117	pabpc1l	99	94.815	Periophthalmus_magnuspinnatus
ENSACIG00000021004	-	71	85.641	ENSPMGG00000023121	-	91	85.641	Periophthalmus_magnuspinnatus
ENSACIG00000021004	-	99	65.358	ENSPEMG00000020671	Pabpc1l	99	65.358	Peromyscus_maniculatus_bairdii
ENSACIG00000021004	-	100	91.924	ENSPFOG00000013241	pabpc1l	99	91.924	Poecilia_formosa
ENSACIG00000021004	-	100	93.204	ENSPLAG00000017490	-	100	87.719	Poecilia_latipinna
ENSACIG00000021004	-	72	99.048	ENSPLAG00000023686	-	92	98.462	Poecilia_latipinna
ENSACIG00000021004	-	72	99.048	ENSPMEG00000009185	-	88	98.462	Poecilia_mexicana
ENSACIG00000021004	-	100	91.924	ENSPMEG00000007677	pabpc1l	100	88.000	Poecilia_mexicana
ENSACIG00000021004	-	76	95.013	ENSPREG00000015886	pabpc1l	100	95.146	Poecilia_reticulata
ENSACIG00000021004	-	99	71.807	ENSPPYG00000011042	PABPC1L	99	68.109	Pongo_abelii
ENSACIG00000021004	-	70	82.051	ENSPCAG00000011787	-	75	84.375	Procavia_capensis
ENSACIG00000021004	-	99	72.857	ENSPCOG00000020630	PABPC1L	99	69.333	Propithecus_coquereli
ENSACIG00000021004	-	99	71.256	ENSPVAG00000012663	PABPC1L	98	71.256	Pteropus_vampyrus
ENSACIG00000021004	-	100	95.817	ENSPNYG00000004101	pabpc1l	100	95.817	Pundamilia_nyererei
ENSACIG00000021004	-	100	73.861	ENSPNAG00000021248	pabpc1l	100	73.163	Pygocentrus_nattereri
ENSACIG00000021004	-	99	65.429	ENSRNOG00000012750	Pabpc1l	98	65.429	Rattus_norvegicus
ENSACIG00000021004	-	99	79.121	ENSRBIG00000035381	PABPC1L	90	79.121	Rhinopithecus_bieti
ENSACIG00000021004	-	99	79.121	ENSRROG00000044498	PABPC1L	99	67.628	Rhinopithecus_roxellana
ENSACIG00000021004	-	99	69.266	ENSSBOG00000009532	-	98	69.266	Saimiri_boliviensis_boliviensis
ENSACIG00000021004	-	99	70.418	ENSSHAG00000011446	PABPC1L	100	70.418	Sarcophilus_harrisii
ENSACIG00000021004	-	100	83.333	ENSSFOG00015017304	pabpc1l	99	83.333	Scleropages_formosus
ENSACIG00000021004	-	100	91.211	ENSSMAG00000010516	pabpc1l	98	98.450	Scophthalmus_maximus
ENSACIG00000021004	-	100	92.961	ENSSDUG00000014743	pabpc1l	99	92.961	Seriola_dumerili
ENSACIG00000021004	-	99	92.445	ENSSLDG00000006981	pabpc1l	99	91.971	Seriola_lalandi_dorsalis
ENSACIG00000021004	-	99	75.822	ENSSPUG00000004233	PABPC1L	99	71.270	Sphenodon_punctatus
ENSACIG00000021004	-	100	83.835	ENSSPAG00000017137	pabpc1l	98	83.835	Stegastes_partitus
ENSACIG00000021004	-	99	73.430	ENSSSCG00000007382	PABPC1L	98	73.430	Sus_scrofa
ENSACIG00000021004	-	99	75.172	ENSTGUG00000005114	PABPC1L	98	75.172	Taeniopygia_guttata
ENSACIG00000021004	-	96	91.605	ENSTRUG00000011085	pabpc1l	96	91.605	Takifugu_rubripes
ENSACIG00000021004	-	99	87.745	ENSTNIG00000017903	pabpc1l	98	83.949	Tetraodon_nigroviridis
ENSACIG00000021004	-	99	76.030	ENSTBEG00000002851	PABPC1L	79	77.397	Tupaia_belangeri
ENSACIG00000021004	-	93	71.186	ENSTTRG00000007618	PABPC1L	100	65.833	Tursiops_truncatus
ENSACIG00000021004	-	99	67.207	ENSUAMG00000017682	PABPC1L	99	66.829	Ursus_americanus
ENSACIG00000021004	-	76	74.359	ENSUMAG00000025436	PABPC1L	93	73.278	Ursus_maritimus
ENSACIG00000021004	-	98	75.889	ENSVVUG00000018939	PABPC1L	98	75.889	Vulpes_vulpes
ENSACIG00000021004	-	99	71.991	ENSXETG00000022831	pabpc1l	99	69.634	Xenopus_tropicalis
ENSACIG00000021004	-	100	90.398	ENSXCOG00000005459	pabpc1l	99	93.617	Xiphophorus_couchianus
ENSACIG00000021004	-	100	91.211	ENSXMAG00000017135	pabpc1l	100	87.241	Xiphophorus_maculatus