EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000021043 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 19553 bases
Position: chrCCOE01000112.1:436291-455843
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000027175	RRM_1	PF00076.22	9.1e-16	1	2
ENSACIP00000027175	RRM_1	PF00076.22	9.1e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000027887	-	1488	-	ENSACIP00000027175	495 (aa)	-	-

Gene Model

Click here to download ENSACIG00000021043's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000021043's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000021043	rnpc3	97	53.507	ENSG00000185946	RNPC3	96	58.647	Homo_sapiens
ENSACIG00000021043	rnpc3	99	79.804	ENSAPOG00000017371	rnpc3	99	79.608	Acanthochromis_polyacanthus
ENSACIG00000021043	rnpc3	97	51.569	ENSAMEG00000001694	RNPC3	95	51.765	Ailuropoda_melanoleuca
ENSACIG00000021043	rnpc3	99	80.196	ENSAOCG00000014052	rnpc3	98	80.000	Amphiprion_ocellaris
ENSACIG00000021043	rnpc3	99	80.000	ENSAPEG00000008739	rnpc3	98	79.804	Amphiprion_percula
ENSACIG00000021043	rnpc3	99	78.125	ENSATEG00000021263	rnpc3	99	78.125	Anabas_testudineus
ENSACIG00000021043	rnpc3	89	53.579	ENSAPLG00000015605	RNPC3	99	53.796	Anas_platyrhynchos
ENSACIG00000021043	rnpc3	96	53.550	ENSACAG00000002029	RNPC3	96	51.786	Anolis_carolinensis
ENSACIG00000021043	rnpc3	97	53.400	ENSANAG00000019950	RNPC3	95	53.267	Aotus_nancymaae
ENSACIG00000021043	rnpc3	100	84.736	ENSACLG00000014702	rnpc3	99	84.736	Astatotilapia_calliptera
ENSACIG00000021043	rnpc3	99	63.372	ENSAMXG00000033372	rnpc3	99	63.372	Astyanax_mexicanus
ENSACIG00000021043	rnpc3	97	53.507	ENSBTAG00000019091	RNPC3	95	53.707	Bos_taurus
ENSACIG00000021043	rnpc3	97	52.200	ENSCJAG00000035686	RNPC3	95	52.400	Callithrix_jacchus
ENSACIG00000021043	rnpc3	97	53.200	ENSCAFG00000019972	RNPC3	95	53.200	Canis_familiaris
ENSACIG00000021043	rnpc3	97	53.200	ENSCAFG00020011300	RNPC3	95	53.400	Canis_lupus_dingo
ENSACIG00000021043	rnpc3	97	52.871	ENSCHIG00000020361	RNPC3	95	53.200	Capra_hircus
ENSACIG00000021043	rnpc3	97	53.175	ENSTSYG00000030256	RNPC3	95	53.373	Carlito_syrichta
ENSACIG00000021043	rnpc3	85	44.064	ENSCAPG00000013600	RNPC3	97	43.864	Cavia_aperea
ENSACIG00000021043	rnpc3	97	52.400	ENSCPOG00000031638	RNPC3	95	52.400	Cavia_porcellus
ENSACIG00000021043	rnpc3	97	53.200	ENSCCAG00000024301	RNPC3	95	52.871	Cebus_capucinus
ENSACIG00000021043	rnpc3	97	53.400	ENSCATG00000002086	RNPC3	95	53.663	Cercocebus_atys
ENSACIG00000021043	rnpc3	97	51.163	ENSCLAG00000005169	RNPC3	95	52.495	Chinchilla_lanigera
ENSACIG00000021043	rnpc3	97	53.400	ENSCSAG00000001519	RNPC3	95	53.600	Chlorocebus_sabaeus
ENSACIG00000021043	rnpc3	97	55.378	ENSCPBG00000028311	RNPC3	95	55.578	Chrysemys_picta_bellii
ENSACIG00000021043	rnpc3	60	55.385	ENSCSAVG00000002800	-	76	55.385	Ciona_savignyi
ENSACIG00000021043	rnpc3	97	53.000	ENSCANG00000031444	RNPC3	95	53.200	Colobus_angolensis_palliatus
ENSACIG00000021043	rnpc3	97	52.695	ENSCGRG00001019276	Rnpc3	95	52.695	Cricetulus_griseus_chok1gshd
ENSACIG00000021043	rnpc3	89	50.324	ENSCGRG00000000053	Rnpc3	99	50.324	Cricetulus_griseus_crigri
ENSACIG00000021043	rnpc3	99	72.332	ENSCSEG00000013475	rnpc3	99	72.332	Cynoglossus_semilaevis
ENSACIG00000021043	rnpc3	99	77.210	ENSCVAG00000002645	rnpc3	99	77.210	Cyprinodon_variegatus
ENSACIG00000021043	rnpc3	99	64.314	ENSDARG00000011247	rnpc3	97	69.892	Danio_rerio
ENSACIG00000021043	rnpc3	97	52.705	ENSDNOG00000044555	-	95	52.705	Dasypus_novemcinctus
ENSACIG00000021043	rnpc3	97	53.106	ENSDNOG00000047498	-	95	53.507	Dasypus_novemcinctus
ENSACIG00000021043	rnpc3	97	52.789	ENSDORG00000027343	Rnpc3	95	52.789	Dipodomys_ordii
ENSACIG00000021043	rnpc3	97	48.627	ENSEBUG00000002068	rnpc3	96	48.527	Eptatretus_burgeri
ENSACIG00000021043	rnpc3	97	53.800	ENSEASG00005015957	RNPC3	95	54.000	Equus_asinus_asinus
ENSACIG00000021043	rnpc3	97	53.400	ENSECAG00000021148	RNPC3	95	53.600	Equus_caballus
ENSACIG00000021043	rnpc3	99	66.731	ENSELUG00000002264	rnpc3	98	64.808	Esox_lucius
ENSACIG00000021043	rnpc3	98	53.094	ENSFCAG00000024312	RNPC3	95	53.293	Felis_catus
ENSACIG00000021043	rnpc3	89	54.013	ENSFALG00000002580	RNPC3	99	54.378	Ficedula_albicollis
ENSACIG00000021043	rnpc3	97	53.600	ENSFDAG00000019948	RNPC3	95	53.600	Fukomys_damarensis
ENSACIG00000021043	rnpc3	99	70.866	ENSFHEG00000020647	rnpc3	99	70.866	Fundulus_heteroclitus
ENSACIG00000021043	rnpc3	99	64.497	ENSGMOG00000019213	rnpc3	98	64.229	Gadus_morhua
ENSACIG00000021043	rnpc3	97	54.491	ENSGALG00000005162	RNPC3	88	54.600	Gallus_gallus
ENSACIG00000021043	rnpc3	99	73.819	ENSGAFG00000017236	rnpc3	99	73.828	Gambusia_affinis
ENSACIG00000021043	rnpc3	99	75.097	ENSGACG00000002048	rnpc3	99	75.486	Gasterosteus_aculeatus
ENSACIG00000021043	rnpc3	97	55.578	ENSGAGG00000008438	RNPC3	94	55.578	Gopherus_agassizii
ENSACIG00000021043	rnpc3	98	47.835	ENSGGOG00000026201	-	95	47.835	Gorilla_gorilla
ENSACIG00000021043	rnpc3	86	89.796	ENSHBUG00000015966	rnpc3	85	89.796	Haplochromis_burtoni
ENSACIG00000021043	rnpc3	97	52.475	ENSHGLG00000001708	RNPC3	95	52.475	Heterocephalus_glaber_female
ENSACIG00000021043	rnpc3	97	52.475	ENSHGLG00100003005	RNPC3	95	52.475	Heterocephalus_glaber_male
ENSACIG00000021043	rnpc3	99	72.157	ENSHCOG00000017135	rnpc3	99	71.961	Hippocampus_comes
ENSACIG00000021043	rnpc3	99	60.196	ENSIPUG00000002916	rnpc3	99	61.569	Ictalurus_punctatus
ENSACIG00000021043	rnpc3	97	53.000	ENSSTOG00000025020	RNPC3	95	53.400	Ictidomys_tridecemlineatus
ENSACIG00000021043	rnpc3	97	52.314	ENSJJAG00000010203	Rnpc3	96	52.495	Jaculus_jaculus
ENSACIG00000021043	rnpc3	100	75.246	ENSKMAG00000017358	rnpc3	100	74.853	Kryptolebias_marmoratus
ENSACIG00000021043	rnpc3	99	76.667	ENSLBEG00000024901	rnpc3	97	76.471	Labrus_bergylta
ENSACIG00000021043	rnpc3	99	56.275	ENSLACG00000005720	RNPC3	91	53.922	Latimeria_chalumnae
ENSACIG00000021043	rnpc3	99	62.083	ENSLOCG00000007986	rnpc3	99	59.055	Lepisosteus_oculatus
ENSACIG00000021043	rnpc3	97	52.778	ENSLAFG00000032342	RNPC3	95	52.778	Loxodonta_africana
ENSACIG00000021043	rnpc3	97	53.400	ENSMFAG00000002004	RNPC3	95	53.663	Macaca_fascicularis
ENSACIG00000021043	rnpc3	97	41.463	ENSMFAG00000002917	-	95	40.541	Macaca_fascicularis
ENSACIG00000021043	rnpc3	79	49.321	ENSMMUG00000002098	-	85	51.131	Macaca_mulatta
ENSACIG00000021043	rnpc3	97	53.200	ENSMMUG00000018039	RNPC3	95	53.465	Macaca_mulatta
ENSACIG00000021043	rnpc3	97	50.200	ENSMNEG00000033950	RNPC3	95	50.495	Macaca_nemestrina
ENSACIG00000021043	rnpc3	97	39.337	ENSMNEG00000029209	-	95	40.541	Macaca_nemestrina
ENSACIG00000021043	rnpc3	97	40.825	ENSMLEG00000034644	-	95	41.616	Mandrillus_leucophaeus
ENSACIG00000021043	rnpc3	97	53.400	ENSMLEG00000033628	RNPC3	95	53.663	Mandrillus_leucophaeus
ENSACIG00000021043	rnpc3	99	70.079	ENSMAMG00000007496	rnpc3	99	70.276	Mastacembelus_armatus
ENSACIG00000021043	rnpc3	100	86.576	ENSMZEG00005020233	rnpc3	100	86.187	Maylandia_zebra
ENSACIG00000021043	rnpc3	89	54.230	ENSMGAG00000006381	RNPC3	99	54.447	Meleagris_gallopavo
ENSACIG00000021043	rnpc3	97	52.988	ENSMAUG00000001358	Rnpc3	95	52.988	Mesocricetus_auratus
ENSACIG00000021043	rnpc3	97	53.400	ENSMICG00000029591	RNPC3	95	53.400	Microcebus_murinus
ENSACIG00000021043	rnpc3	97	52.800	ENSMOCG00000013423	Rnpc3	95	52.800	Microtus_ochrogaster
ENSACIG00000021043	rnpc3	99	72.455	ENSMMOG00000005309	rnpc3	99	73.800	Mola_mola
ENSACIG00000021043	rnpc3	97	53.280	ENSMODG00000002946	RNPC3	95	53.280	Monodelphis_domestica
ENSACIG00000021043	rnpc3	99	74.111	ENSMALG00000015471	rnpc3	99	74.308	Monopterus_albus
ENSACIG00000021043	rnpc3	97	53.320	MGP_CAROLIEiJ_G0025555	Rnpc3	96	53.320	Mus_caroli
ENSACIG00000021043	rnpc3	97	53.106	ENSMUSG00000027981	Rnpc3	99	51.168	Mus_musculus
ENSACIG00000021043	rnpc3	98	52.495	MGP_PahariEiJ_G0027001	Rnpc3	97	52.495	Mus_pahari
ENSACIG00000021043	rnpc3	97	52.906	MGP_SPRETEiJ_G0026505	Rnpc3	96	52.906	Mus_spretus
ENSACIG00000021043	rnpc3	97	53.307	ENSMPUG00000007349	RNPC3	95	53.307	Mustela_putorius_furo
ENSACIG00000021043	rnpc3	97	52.695	ENSMLUG00000028743	RNPC3	95	52.894	Myotis_lucifugus
ENSACIG00000021043	rnpc3	97	52.800	ENSNGAG00000010939	Rnpc3	95	52.800	Nannospalax_galili
ENSACIG00000021043	rnpc3	100	85.127	ENSNBRG00000012196	rnpc3	96	85.127	Neolamprologus_brichardi
ENSACIG00000021043	rnpc3	97	53.507	ENSNLEG00000012013	RNPC3	95	53.770	Nomascus_leucogenys
ENSACIG00000021043	rnpc3	97	52.705	ENSODEG00000007612	RNPC3	95	52.705	Octodon_degus
ENSACIG00000021043	rnpc3	100	87.084	ENSONIG00000004770	rnpc3	100	86.720	Oreochromis_niloticus
ENSACIG00000021043	rnpc3	92	54.545	ENSOANG00000008220	RNPC3	99	54.968	Ornithorhynchus_anatinus
ENSACIG00000021043	rnpc3	97	52.549	ENSOCUG00000004016	RNPC3	95	53.069	Oryctolagus_cuniculus
ENSACIG00000021043	rnpc3	99	72.157	ENSORLG00000005694	rnpc3	99	72.157	Oryzias_latipes
ENSACIG00000021043	rnpc3	99	74.898	ENSORLG00020005513	rnpc3	99	74.898	Oryzias_latipes_hni
ENSACIG00000021043	rnpc3	99	72.353	ENSORLG00015002179	rnpc3	99	72.353	Oryzias_latipes_hsok
ENSACIG00000021043	rnpc3	99	73.477	ENSOMEG00000017737	rnpc3	99	73.870	Oryzias_melastigma
ENSACIG00000021043	rnpc3	97	53.187	ENSOGAG00000026182	RNPC3	95	53.187	Otolemur_garnettii
ENSACIG00000021043	rnpc3	97	52.871	ENSOARG00000018719	RNPC3	95	53.200	Ovis_aries
ENSACIG00000021043	rnpc3	97	53.493	ENSPPAG00000037459	RNPC3	95	53.557	Pan_paniscus
ENSACIG00000021043	rnpc3	98	47.082	ENSPPAG00000030278	-	97	46.894	Pan_paniscus
ENSACIG00000021043	rnpc3	98	53.094	ENSPPRG00000020246	RNPC3	95	53.094	Panthera_pardus
ENSACIG00000021043	rnpc3	98	53.094	ENSPTIG00000009887	RNPC3	97	53.293	Panthera_tigris_altaica
ENSACIG00000021043	rnpc3	97	53.200	ENSPTRG00000033902	RNPC3	95	53.465	Pan_troglodytes
ENSACIG00000021043	rnpc3	98	47.835	ENSPTRG00000044227	-	97	47.835	Pan_troglodytes
ENSACIG00000021043	rnpc3	97	43.685	ENSPANG00000029957	-	96	39.842	Papio_anubis
ENSACIG00000021043	rnpc3	97	53.507	ENSPANG00000012137	RNPC3	95	53.770	Papio_anubis
ENSACIG00000021043	rnpc3	99	62.157	ENSPKIG00000008828	rnpc3	98	60.665	Paramormyrops_kingsleyae
ENSACIG00000021043	rnpc3	67	53.550	ENSPSIG00000007396	RNPC3	99	54.142	Pelodiscus_sinensis
ENSACIG00000021043	rnpc3	99	66.078	ENSPMGG00000011742	rnpc3	99	65.098	Periophthalmus_magnuspinnatus
ENSACIG00000021043	rnpc3	89	51.188	ENSPEMG00000020112	Rnpc3	99	51.188	Peromyscus_maniculatus_bairdii
ENSACIG00000021043	rnpc3	50	48.828	ENSPMAG00000003778	rnpc3	95	43.411	Petromyzon_marinus
ENSACIG00000021043	rnpc3	97	53.400	ENSPCIG00000004415	-	95	53.400	Phascolarctos_cinereus
ENSACIG00000021043	rnpc3	99	76.817	ENSPFOG00000009895	rnpc3	99	76.621	Poecilia_formosa
ENSACIG00000021043	rnpc3	99	77.014	ENSPLAG00000012023	rnpc3	99	76.817	Poecilia_latipinna
ENSACIG00000021043	rnpc3	99	76.817	ENSPMEG00000003663	rnpc3	99	76.621	Poecilia_mexicana
ENSACIG00000021043	rnpc3	99	76.031	ENSPREG00000010206	rnpc3	99	75.835	Poecilia_reticulata
ENSACIG00000021043	rnpc3	81	49.403	ENSPPYG00000001102	RNPC3	94	49.528	Pongo_abelii
ENSACIG00000021043	rnpc3	100	85.127	ENSPNYG00000020603	rnpc3	99	85.127	Pundamilia_nyererei
ENSACIG00000021043	rnpc3	99	60.158	ENSPNAG00000000524	rnpc3	91	59.961	Pygocentrus_nattereri
ENSACIG00000021043	rnpc3	97	53.082	ENSRNOG00000017310	Rnpc3	95	53.082	Rattus_norvegicus
ENSACIG00000021043	rnpc3	97	50.699	ENSRBIG00000043897	RNPC3	95	50.699	Rhinopithecus_bieti
ENSACIG00000021043	rnpc3	97	53.400	ENSRROG00000032334	RNPC3	95	53.663	Rhinopithecus_roxellana
ENSACIG00000021043	rnpc3	97	53.507	ENSSBOG00000024473	RNPC3	96	53.045	Saimiri_boliviensis_boliviensis
ENSACIG00000021043	rnpc3	97	53.800	ENSSHAG00000011859	RNPC3	95	53.800	Sarcophilus_harrisii
ENSACIG00000021043	rnpc3	99	65.422	ENSSFOG00015013055	rnpc3	99	65.600	Scleropages_formosus
ENSACIG00000021043	rnpc3	99	76.367	ENSSMAG00000020346	rnpc3	99	76.367	Scophthalmus_maximus
ENSACIG00000021043	rnpc3	99	79.804	ENSSDUG00000006600	rnpc3	99	79.804	Seriola_dumerili
ENSACIG00000021043	rnpc3	99	79.804	ENSSLDG00000007979	rnpc3	99	79.804	Seriola_lalandi_dorsalis
ENSACIG00000021043	rnpc3	97	51.205	ENSSPUG00000003872	-	92	51.205	Sphenodon_punctatus
ENSACIG00000021043	rnpc3	97	54.241	ENSSPUG00000008539	-	95	54.241	Sphenodon_punctatus
ENSACIG00000021043	rnpc3	99	80.800	ENSSPAG00000005633	rnpc3	99	79.208	Stegastes_partitus
ENSACIG00000021043	rnpc3	97	52.047	ENSSSCG00000037254	RNPC3	95	54.108	Sus_scrofa
ENSACIG00000021043	rnpc3	89	53.348	ENSTGUG00000004795	-	99	53.348	Taeniopygia_guttata
ENSACIG00000021043	rnpc3	99	71.820	ENSTNIG00000018963	rnpc3	99	71.820	Tetraodon_nigroviridis
ENSACIG00000021043	rnpc3	97	51.473	ENSUMAG00000007775	RNPC3	97	51.670	Ursus_maritimus
ENSACIG00000021043	rnpc3	97	53.200	ENSVVUG00000000331	RNPC3	95	53.400	Vulpes_vulpes
ENSACIG00000021043	rnpc3	97	43.738	ENSXETG00000025027	rnpc3	96	42.285	Xenopus_tropicalis
ENSACIG00000021043	rnpc3	56	76.087	ENSXCOG00000005013	rnpc3	99	73.077	Xiphophorus_couchianus
ENSACIG00000021043	rnpc3	99	74.606	ENSXMAG00000006495	rnpc3	99	74.656	Xiphophorus_maculatus