EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000021553 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 14711 bases
Position: chrCCOE01000292.1:1543427-1558137
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000027872	ResIII	PF04851.15	1.5e-11	1	1
ENSACIP00000027872	DEAD	PF00270.29	4.3e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000028608	-	3252	-	ENSACIP00000027872	1083 (aa)	-	-

Gene Model

Click here to download ENSACIG00000021553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000021553's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000021553	hfm1	68	33.282	ENSACIG00000004551	ascc3	62	33.282
ENSACIG00000021553	hfm1	68	31.522	ENSACIG00000001764	snrnp200	70	31.522

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000021553	hfm1	91	60.662	ENSG00000162669	HFM1	70	60.662	Homo_sapiens
ENSACIG00000021553	hfm1	81	89.683	ENSAPOG00000005304	hfm1	96	89.683	Acanthochromis_polyacanthus
ENSACIG00000021553	hfm1	92	60.327	ENSAMEG00000000432	HFM1	71	60.327	Ailuropoda_melanoleuca
ENSACIG00000021553	hfm1	73	89.001	ENSAOCG00000022839	hfm1	96	89.001	Amphiprion_ocellaris
ENSACIG00000021553	hfm1	73	89.607	ENSAPEG00000014316	hfm1	96	89.607	Amphiprion_percula
ENSACIG00000021553	hfm1	95	75.067	ENSATEG00000019181	hfm1	94	74.064	Anabas_testudineus
ENSACIG00000021553	hfm1	92	60.794	ENSAPLG00000013639	HFM1	71	60.794	Anas_platyrhynchos
ENSACIG00000021553	hfm1	91	60.839	ENSANAG00000029513	HFM1	70	60.839	Aotus_nancymaae
ENSACIG00000021553	hfm1	95	84.185	ENSACLG00000009033	hfm1	98	84.185	Astatotilapia_calliptera
ENSACIG00000021553	hfm1	85	69.453	ENSAMXG00000006108	hfm1	67	69.453	Astyanax_mexicanus
ENSACIG00000021553	hfm1	94	59.322	ENSBTAG00000020856	HFM1	73	59.322	Bos_taurus
ENSACIG00000021553	hfm1	91	60.117	ENSCJAG00000001843	HFM1	71	60.117	Callithrix_jacchus
ENSACIG00000021553	hfm1	93	59.483	ENSCAFG00000020187	HFM1	73	57.739	Canis_familiaris
ENSACIG00000021553	hfm1	92	60.058	ENSTSYG00000014250	HFM1	71	60.058	Carlito_syrichta
ENSACIG00000021553	hfm1	91	59.496	ENSCPOG00000007421	HFM1	72	59.496	Cavia_porcellus
ENSACIG00000021553	hfm1	91	59.883	ENSCCAG00000033206	HFM1	70	59.883	Cebus_capucinus
ENSACIG00000021553	hfm1	91	60.078	ENSCATG00000030987	HFM1	70	60.078	Cercocebus_atys
ENSACIG00000021553	hfm1	93	57.553	ENSCLAG00000005173	HFM1	72	57.553	Chinchilla_lanigera
ENSACIG00000021553	hfm1	64	52.925	ENSCSAVG00000005094	-	100	52.925	Ciona_savignyi
ENSACIG00000021553	hfm1	89	56.428	ENSCGRG00001016995	Hfm1	70	56.121	Cricetulus_griseus_chok1gshd
ENSACIG00000021553	hfm1	94	57.089	ENSCGRG00000017181	Hfm1	73	57.089	Cricetulus_griseus_crigri
ENSACIG00000021553	hfm1	94	72.514	ENSCSEG00000017659	hfm1	95	72.514	Cynoglossus_semilaevis
ENSACIG00000021553	hfm1	66	83.544	ENSCVAG00000005075	hfm1	86	83.544	Cyprinodon_variegatus
ENSACIG00000021553	hfm1	77	71.446	ENSDARG00000104288	hfm1	75	71.446	Danio_rerio
ENSACIG00000021553	hfm1	93	57.618	ENSDNOG00000004776	HFM1	72	57.618	Dasypus_novemcinctus
ENSACIG00000021553	hfm1	94	56.486	ENSDORG00000014661	Hfm1	73	56.486	Dipodomys_ordii
ENSACIG00000021553	hfm1	90	61.585	ENSEASG00005015424	HFM1	96	61.585	Equus_asinus_asinus
ENSACIG00000021553	hfm1	92	58.653	ENSECAG00000024039	HFM1	72	58.653	Equus_caballus
ENSACIG00000021553	hfm1	75	82.165	ENSELUG00000018944	hfm1	87	82.165	Esox_lucius
ENSACIG00000021553	hfm1	95	58.955	ENSFCAG00000029116	HFM1	73	58.955	Felis_catus
ENSACIG00000021553	hfm1	83	65.306	ENSFALG00000001781	HFM1	73	60.419	Ficedula_albicollis
ENSACIG00000021553	hfm1	93	57.325	ENSFDAG00000020816	HFM1	73	57.325	Fukomys_damarensis
ENSACIG00000021553	hfm1	84	68.922	ENSGMOG00000017436	hfm1	98	68.922	Gadus_morhua
ENSACIG00000021553	hfm1	94	77.202	ENSGAFG00000018093	hfm1	99	77.202	Gambusia_affinis
ENSACIG00000021553	hfm1	84	75.605	ENSGACG00000015686	hfm1	98	75.605	Gasterosteus_aculeatus
ENSACIG00000021553	hfm1	91	60.759	ENSGGOG00000038524	HFM1	70	60.759	Gorilla_gorilla
ENSACIG00000021553	hfm1	95	85.439	ENSHBUG00000007309	hfm1	98	85.439	Haplochromis_burtoni
ENSACIG00000021553	hfm1	76	78.960	ENSHCOG00000019632	hfm1	99	78.960	Hippocampus_comes
ENSACIG00000021553	hfm1	83	71.058	ENSIPUG00000017020	hfm1	89	72.537	Ictalurus_punctatus
ENSACIG00000021553	hfm1	86	60.372	ENSJJAG00000017198	Hfm1	69	60.372	Jaculus_jaculus
ENSACIG00000021553	hfm1	80	80.722	ENSKMAG00000002282	hfm1	91	80.722	Kryptolebias_marmoratus
ENSACIG00000021553	hfm1	95	75.435	ENSLBEG00000006759	hfm1	94	82.822	Labrus_bergylta
ENSACIG00000021553	hfm1	83	65.364	ENSLACG00000010698	HFM1	99	60.825	Latimeria_chalumnae
ENSACIG00000021553	hfm1	91	64.093	ENSLOCG00000004931	hfm1	94	64.093	Lepisosteus_oculatus
ENSACIG00000021553	hfm1	62	70.597	ENSLAFG00000015903	-	90	70.597	Loxodonta_africana
ENSACIG00000021553	hfm1	91	57.253	ENSMFAG00000003649	HFM1	70	57.253	Macaca_fascicularis
ENSACIG00000021553	hfm1	91	60.117	ENSMMUG00000006819	HFM1	70	60.117	Macaca_mulatta
ENSACIG00000021553	hfm1	82	82.399	ENSMAMG00000004623	hfm1	97	83.942	Mastacembelus_armatus
ENSACIG00000021553	hfm1	95	84.119	ENSMZEG00005004679	hfm1	99	84.119	Maylandia_zebra
ENSACIG00000021553	hfm1	69	68.449	ENSMGAG00000008437	HFM1	93	68.449	Meleagris_gallopavo
ENSACIG00000021553	hfm1	91	58.052	ENSMAUG00000018858	Hfm1	71	58.537	Mesocricetus_auratus
ENSACIG00000021553	hfm1	95	58.248	ENSMICG00000037935	HFM1	73	58.248	Microcebus_murinus
ENSACIG00000021553	hfm1	91	59.024	ENSMOCG00000014812	Hfm1	71	59.024	Microtus_ochrogaster
ENSACIG00000021553	hfm1	80	83.659	ENSMMOG00000006148	hfm1	95	83.659	Mola_mola
ENSACIG00000021553	hfm1	95	78.261	ENSMALG00000002401	hfm1	99	78.647	Monopterus_albus
ENSACIG00000021553	hfm1	85	73.729	MGP_CAROLIEiJ_G0027496	Hfm1	69	73.729	Mus_caroli
ENSACIG00000021553	hfm1	91	58.196	ENSMUSG00000043410	Hfm1	71	58.196	Mus_musculus
ENSACIG00000021553	hfm1	95	56.497	MGP_PahariEiJ_G0017268	Hfm1	75	55.586	Mus_pahari
ENSACIG00000021553	hfm1	91	58.681	MGP_SPRETEiJ_G0028495	Hfm1	71	58.681	Mus_spretus
ENSACIG00000021553	hfm1	93	57.632	ENSMPUG00000004594	HFM1	72	57.632	Mustela_putorius_furo
ENSACIG00000021553	hfm1	92	59.632	ENSMLUG00000010200	HFM1	71	59.632	Myotis_lucifugus
ENSACIG00000021553	hfm1	95	80.729	ENSNBRG00000002910	hfm1	97	86.303	Neolamprologus_brichardi
ENSACIG00000021553	hfm1	91	57.546	ENSNLEG00000010285	HFM1	70	57.546	Nomascus_leucogenys
ENSACIG00000021553	hfm1	84	58.714	ENSMEUG00000015788	HFM1	65	58.714	Notamacropus_eugenii
ENSACIG00000021553	hfm1	75	62.069	ENSOPRG00000013916	HFM1	57	62.069	Ochotona_princeps
ENSACIG00000021553	hfm1	92	78.612	ENSONIG00000010590	hfm1	100	78.759	Oreochromis_niloticus
ENSACIG00000021553	hfm1	75	81.034	ENSORLG00000026844	hfm1	99	81.034	Oryzias_latipes
ENSACIG00000021553	hfm1	83	69.165	ENSORLG00020002951	hfm1	74	69.165	Oryzias_latipes_hni
ENSACIG00000021553	hfm1	92	71.161	ENSOMEG00000016474	hfm1	74	71.161	Oryzias_melastigma
ENSACIG00000021553	hfm1	83	63.578	ENSOGAG00000032369	HFM1	76	63.578	Otolemur_garnettii
ENSACIG00000021553	hfm1	94	59.490	ENSOARG00000015812	HFM1	73	59.490	Ovis_aries
ENSACIG00000021553	hfm1	91	60.916	ENSPPAG00000024582	HFM1	76	60.916	Pan_paniscus
ENSACIG00000021553	hfm1	95	58.758	ENSPPRG00000003270	HFM1	73	58.758	Panthera_pardus
ENSACIG00000021553	hfm1	95	58.851	ENSPTIG00000018881	HFM1	73	58.851	Panthera_tigris_altaica
ENSACIG00000021553	hfm1	91	60.704	ENSPTRG00000000948	HFM1	70	60.704	Pan_troglodytes
ENSACIG00000021553	hfm1	91	59.845	ENSPANG00000009838	HFM1	70	59.845	Papio_anubis
ENSACIG00000021553	hfm1	80	70.045	ENSPKIG00000003810	hfm1	94	71.552	Paramormyrops_kingsleyae
ENSACIG00000021553	hfm1	75	78.668	ENSPMGG00000011059	hfm1	98	78.668	Periophthalmus_magnuspinnatus
ENSACIG00000021553	hfm1	91	59.029	ENSPEMG00000022852	Hfm1	70	59.029	Peromyscus_maniculatus_bairdii
ENSACIG00000021553	hfm1	85	62.971	ENSPCIG00000014233	HFM1	64	62.971	Phascolarctos_cinereus
ENSACIG00000021553	hfm1	92	73.340	ENSPFOG00000017194	hfm1	100	73.340	Poecilia_formosa
ENSACIG00000021553	hfm1	94	74.715	ENSPLAG00000000571	hfm1	94	74.715	Poecilia_latipinna
ENSACIG00000021553	hfm1	94	74.976	ENSPMEG00000019475	hfm1	95	74.976	Poecilia_mexicana
ENSACIG00000021553	hfm1	94	74.571	ENSPREG00000007803	hfm1	91	81.650	Poecilia_reticulata
ENSACIG00000021553	hfm1	91	60.467	ENSPPYG00000001163	HFM1	70	60.467	Pongo_abelii
ENSACIG00000021553	hfm1	83	58.040	ENSPVAG00000009713	HFM1	66	58.040	Pteropus_vampyrus
ENSACIG00000021553	hfm1	95	83.896	ENSPNYG00000001795	hfm1	98	83.896	Pundamilia_nyererei
ENSACIG00000021553	hfm1	75	74.261	ENSPNAG00000010865	hfm1	80	74.261	Pygocentrus_nattereri
ENSACIG00000021553	hfm1	91	58.641	ENSRNOG00000023299	Hfm1	71	58.641	Rattus_norvegicus
ENSACIG00000021553	hfm1	91	59.981	ENSRROG00000045569	HFM1	70	59.981	Rhinopithecus_roxellana
ENSACIG00000021553	hfm1	83	63.365	ENSSBOG00000027456	HFM1	66	63.365	Saimiri_boliviensis_boliviensis
ENSACIG00000021553	hfm1	54	69.426	ENSSHAG00000014616	-	67	69.426	Sarcophilus_harrisii
ENSACIG00000021553	hfm1	88	66.238	ENSSFOG00015020129	hfm1	67	66.238	Scleropages_formosus
ENSACIG00000021553	hfm1	81	84.169	ENSSMAG00000006907	hfm1	88	84.169	Scophthalmus_maximus
ENSACIG00000021553	hfm1	77	84.318	ENSSDUG00000011424	hfm1	93	84.318	Seriola_dumerili
ENSACIG00000021553	hfm1	75	85.591	ENSSLDG00000016386	hfm1	90	85.591	Seriola_lalandi_dorsalis
ENSACIG00000021553	hfm1	93	77.228	ENSSPAG00000001023	hfm1	91	86.436	Stegastes_partitus
ENSACIG00000021553	hfm1	95	57.971	ENSSSCG00000006912	HFM1	78	58.704	Sus_scrofa
ENSACIG00000021553	hfm1	83	64.554	ENSTGUG00000006172	HFM1	97	64.554	Taeniopygia_guttata
ENSACIG00000021553	hfm1	92	60.194	ENSTTRG00000013933	HFM1	72	60.194	Tursiops_truncatus
ENSACIG00000021553	hfm1	92	58.325	ENSVPAG00000011331	HFM1	71	58.325	Vicugna_pacos
ENSACIG00000021553	hfm1	90	60.521	ENSVVUG00000020760	HFM1	98	60.521	Vulpes_vulpes
ENSACIG00000021553	hfm1	75	82.143	ENSXMAG00000004178	hfm1	90	82.143	Xiphophorus_maculatus