EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000000823 (Gene tree)
Gene ID: 113027754
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 10710 bases
Position: chr8:24181011-24191720
Accession: 113027754
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000001143	TruB_N	PF01509.18	2.4e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000001171	-	3779	-	ENSACLP00000001143	278 (aa)	XP_026033314	UPI000E3FE21E

Gene Model

Click here to download ENSACLG00000000823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000000823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000000823	trub1	71	31.000	ENSACLG00000010793	trub2	60	31.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000000823	trub1	91	67.063	ENSG00000165832	TRUB1	72	67.063	Homo_sapiens
ENSACLG00000000823	trub1	94	89.695	ENSAPOG00000020565	trub1	99	88.235	Acanthochromis_polyacanthus
ENSACLG00000000823	trub1	91	66.929	ENSAMEG00000014931	TRUB1	72	66.929	Ailuropoda_melanoleuca
ENSACLG00000000823	trub1	99	84.116	ENSACIG00000003060	trub1	93	84.116	Amphilophus_citrinellus
ENSACLG00000000823	trub1	94	88.550	ENSAOCG00000017188	trub1	99	86.765	Amphiprion_ocellaris
ENSACLG00000000823	trub1	94	88.931	ENSAPEG00000015209	trub1	99	87.132	Amphiprion_percula
ENSACLG00000000823	trub1	88	88.980	ENSATEG00000023291	trub1	88	88.980	Anabas_testudineus
ENSACLG00000000823	trub1	94	67.433	ENSAPLG00000006808	TRUB1	93	67.433	Anas_platyrhynchos
ENSACLG00000000823	trub1	88	66.939	ENSACAG00000009282	TRUB1	88	66.939	Anolis_carolinensis
ENSACLG00000000823	trub1	91	67.063	ENSANAG00000022870	TRUB1	72	67.063	Aotus_nancymaae
ENSACLG00000000823	trub1	94	74.330	ENSAMXG00000015845	trub1	87	74.330	Astyanax_mexicanus
ENSACLG00000000823	trub1	91	67.857	ENSBTAG00000012955	TRUB1	72	67.857	Bos_taurus
ENSACLG00000000823	trub1	91	67.063	ENSCJAG00000047815	TRUB1	72	67.063	Callithrix_jacchus
ENSACLG00000000823	trub1	91	67.460	ENSCAFG00000011688	TRUB1	72	67.460	Canis_familiaris
ENSACLG00000000823	trub1	91	67.460	ENSCAFG00020013237	TRUB1	72	67.460	Canis_lupus_dingo
ENSACLG00000000823	trub1	91	67.460	ENSCHIG00000020884	TRUB1	75	67.460	Capra_hircus
ENSACLG00000000823	trub1	91	66.270	ENSTSYG00000000446	TRUB1	72	66.270	Carlito_syrichta
ENSACLG00000000823	trub1	78	60.550	ENSCAPG00000017088	TRUB1	85	60.550	Cavia_aperea
ENSACLG00000000823	trub1	67	63.978	ENSCPOG00000030129	-	72	63.978	Cavia_porcellus
ENSACLG00000000823	trub1	66	65.027	ENSCPOG00000040236	-	75	65.027	Cavia_porcellus
ENSACLG00000000823	trub1	91	67.063	ENSCCAG00000028842	TRUB1	72	67.063	Cebus_capucinus
ENSACLG00000000823	trub1	91	67.063	ENSCATG00000033431	TRUB1	72	67.063	Cercocebus_atys
ENSACLG00000000823	trub1	66	64.481	ENSCLAG00000008664	TRUB1	75	64.481	Chinchilla_lanigera
ENSACLG00000000823	trub1	91	67.063	ENSCSAG00000004891	TRUB1	72	67.063	Chlorocebus_sabaeus
ENSACLG00000000823	trub1	87	60.331	ENSCHOG00000011931	TRUB1	70	60.331	Choloepus_hoffmanni
ENSACLG00000000823	trub1	88	71.020	ENSCPBG00000003051	TRUB1	84	71.020	Chrysemys_picta_bellii
ENSACLG00000000823	trub1	91	67.063	ENSCANG00000029445	TRUB1	72	67.063	Colobus_angolensis_palliatus
ENSACLG00000000823	trub1	81	66.814	ENSCGRG00001016772	-	90	58.909	Cricetulus_griseus_chok1gshd
ENSACLG00000000823	trub1	90	58.730	ENSCGRG00001010322	-	69	57.915	Cricetulus_griseus_chok1gshd
ENSACLG00000000823	trub1	88	66.939	ENSCGRG00000010806	Trub1	77	65.873	Cricetulus_griseus_crigri
ENSACLG00000000823	trub1	95	77.273	ENSCSEG00000011261	trub1	87	76.296	Cynoglossus_semilaevis
ENSACLG00000000823	trub1	91	81.496	ENSCVAG00000008791	trub1	78	81.496	Cyprinodon_variegatus
ENSACLG00000000823	trub1	94	71.374	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSACLG00000000823	trub1	91	65.079	ENSDNOG00000001069	TRUB1	72	65.079	Dasypus_novemcinctus
ENSACLG00000000823	trub1	88	66.939	ENSDORG00000010431	Trub1	73	65.873	Dipodomys_ordii
ENSACLG00000000823	trub1	69	64.234	ENSETEG00000009183	TRUB1	55	64.234	Echinops_telfairi
ENSACLG00000000823	trub1	91	66.667	ENSEASG00005014739	TRUB1	72	66.667	Equus_asinus_asinus
ENSACLG00000000823	trub1	91	66.667	ENSECAG00000007177	TRUB1	72	66.667	Equus_caballus
ENSACLG00000000823	trub1	93	58.015	ENSEEUG00000013993	TRUB1	77	55.957	Erinaceus_europaeus
ENSACLG00000000823	trub1	91	79.528	ENSELUG00000000502	trub1	89	79.528	Esox_lucius
ENSACLG00000000823	trub1	91	67.460	ENSFCAG00000031927	TRUB1	72	67.460	Felis_catus
ENSACLG00000000823	trub1	83	65.272	ENSFALG00000002232	TRUB1	92	65.272	Ficedula_albicollis
ENSACLG00000000823	trub1	66	65.574	ENSFDAG00000008140	TRUB1	75	65.574	Fukomys_damarensis
ENSACLG00000000823	trub1	98	82.721	ENSFHEG00000004016	trub1	93	82.721	Fundulus_heteroclitus
ENSACLG00000000823	trub1	94	65.900	ENSGALG00000009091	TRUB1	92	65.900	Gallus_gallus
ENSACLG00000000823	trub1	92	83.203	ENSGAFG00000009193	trub1	89	82.031	Gambusia_affinis
ENSACLG00000000823	trub1	72	89.447	ENSGACG00000015387	trub1	98	89.447	Gasterosteus_aculeatus
ENSACLG00000000823	trub1	88	71.020	ENSGAGG00000009758	TRUB1	70	71.020	Gopherus_agassizii
ENSACLG00000000823	trub1	91	67.063	ENSGGOG00000004583	TRUB1	72	67.063	Gorilla_gorilla
ENSACLG00000000823	trub1	100	98.561	ENSHBUG00000016787	trub1	100	98.561	Haplochromis_burtoni
ENSACLG00000000823	trub1	91	65.476	ENSHGLG00000015314	TRUB1	72	65.476	Heterocephalus_glaber_female
ENSACLG00000000823	trub1	66	65.027	ENSHGLG00100009183	TRUB1	77	65.027	Heterocephalus_glaber_male
ENSACLG00000000823	trub1	95	84.848	ENSHCOG00000017877	trub1	96	84.848	Hippocampus_comes
ENSACLG00000000823	trub1	94	73.946	ENSIPUG00000017559	trub1	91	73.946	Ictalurus_punctatus
ENSACLG00000000823	trub1	91	67.063	ENSSTOG00000003641	TRUB1	75	67.063	Ictidomys_tridecemlineatus
ENSACLG00000000823	trub1	91	65.079	ENSJJAG00000011800	Trub1	74	65.079	Jaculus_jaculus
ENSACLG00000000823	trub1	98	84.559	ENSKMAG00000006232	trub1	98	84.559	Kryptolebias_marmoratus
ENSACLG00000000823	trub1	98	84.615	ENSLBEG00000026722	trub1	95	84.615	Labrus_bergylta
ENSACLG00000000823	trub1	100	67.986	ENSLACG00000014885	TRUB1	86	70.656	Latimeria_chalumnae
ENSACLG00000000823	trub1	94	75.573	ENSLOCG00000012979	trub1	88	75.573	Lepisosteus_oculatus
ENSACLG00000000823	trub1	91	67.063	ENSLAFG00000015452	TRUB1	75	65.649	Loxodonta_africana
ENSACLG00000000823	trub1	91	67.063	ENSMFAG00000031767	TRUB1	72	67.063	Macaca_fascicularis
ENSACLG00000000823	trub1	91	67.063	ENSMMUG00000001902	TRUB1	72	67.063	Macaca_mulatta
ENSACLG00000000823	trub1	91	61.905	ENSMNEG00000044646	TRUB1	71	62.302	Macaca_nemestrina
ENSACLG00000000823	trub1	91	67.063	ENSMLEG00000042655	TRUB1	72	67.063	Mandrillus_leucophaeus
ENSACLG00000000823	trub1	100	99.640	ENSMZEG00005024095	trub1	100	99.640	Maylandia_zebra
ENSACLG00000000823	trub1	94	66.667	ENSMGAG00000011135	TRUB1	90	66.667	Meleagris_gallopavo
ENSACLG00000000823	trub1	91	63.492	ENSMAUG00000011101	Trub1	76	62.548	Mesocricetus_auratus
ENSACLG00000000823	trub1	91	66.667	ENSMICG00000016324	TRUB1	72	66.667	Microcebus_murinus
ENSACLG00000000823	trub1	90	65.873	ENSMOCG00000017759	Trub1	78	64.865	Microtus_ochrogaster
ENSACLG00000000823	trub1	88	68.852	ENSMODG00000009676	TRUB1	69	67.331	Monodelphis_domestica
ENSACLG00000000823	trub1	89	66.532	MGP_CAROLIEiJ_G0023100	Trub1	79	64.615	Mus_caroli
ENSACLG00000000823	trub1	89	65.726	ENSMUSG00000025086	Trub1	79	63.590	Mus_musculus
ENSACLG00000000823	trub1	91	65.079	MGP_PahariEiJ_G0014588	Trub1	75	65.079	Mus_pahari
ENSACLG00000000823	trub1	89	65.726	MGP_SPRETEiJ_G0024021	Trub1	79	63.590	Mus_spretus
ENSACLG00000000823	trub1	91	67.460	ENSMPUG00000003556	TRUB1	72	67.460	Mustela_putorius_furo
ENSACLG00000000823	trub1	93	65.134	ENSMLUG00000017686	TRUB1	77	65.134	Myotis_lucifugus
ENSACLG00000000823	trub1	91	66.270	ENSNGAG00000018682	Trub1	72	66.270	Nannospalax_galili
ENSACLG00000000823	trub1	94	96.198	ENSNBRG00000023393	trub1	94	96.198	Neolamprologus_brichardi
ENSACLG00000000823	trub1	91	67.063	ENSNLEG00000016345	TRUB1	72	67.063	Nomascus_leucogenys
ENSACLG00000000823	trub1	72	69.652	ENSMEUG00000006603	TRUB1	77	67.788	Notamacropus_eugenii
ENSACLG00000000823	trub1	93	64.885	ENSOPRG00000009371	TRUB1	76	64.885	Ochotona_princeps
ENSACLG00000000823	trub1	91	64.683	ENSODEG00000010854	TRUB1	72	64.683	Octodon_degus
ENSACLG00000000823	trub1	99	96.000	ENSONIG00000007249	trub1	100	96.000	Oreochromis_niloticus
ENSACLG00000000823	trub1	92	66.406	ENSOANG00000001556	TRUB1	85	66.279	Ornithorhynchus_anatinus
ENSACLG00000000823	trub1	91	66.270	ENSOCUG00000009456	TRUB1	73	66.270	Oryctolagus_cuniculus
ENSACLG00000000823	trub1	99	81.091	ENSORLG00000029719	trub1	98	81.091	Oryzias_latipes
ENSACLG00000000823	trub1	99	80.727	ENSORLG00020016767	trub1	97	80.727	Oryzias_latipes_hni
ENSACLG00000000823	trub1	99	80.727	ENSORLG00015014728	trub1	98	80.727	Oryzias_latipes_hsok
ENSACLG00000000823	trub1	93	83.012	ENSOMEG00000014556	trub1	91	83.012	Oryzias_melastigma
ENSACLG00000000823	trub1	91	67.063	ENSOGAG00000015895	TRUB1	72	67.063	Otolemur_garnettii
ENSACLG00000000823	trub1	91	66.023	ENSOARG00000015591	TRUB1	74	66.023	Ovis_aries
ENSACLG00000000823	trub1	91	67.063	ENSPPAG00000043645	TRUB1	72	67.063	Pan_paniscus
ENSACLG00000000823	trub1	91	67.063	ENSPPRG00000007096	TRUB1	72	67.063	Panthera_pardus
ENSACLG00000000823	trub1	91	67.063	ENSPTIG00000006378	TRUB1	72	67.063	Panthera_tigris_altaica
ENSACLG00000000823	trub1	91	67.063	ENSPTRG00000002964	TRUB1	72	67.063	Pan_troglodytes
ENSACLG00000000823	trub1	91	67.063	ENSPANG00000020712	TRUB1	72	67.063	Papio_anubis
ENSACLG00000000823	trub1	60	80.357	ENSPKIG00000003852	trub1	72	80.357	Paramormyrops_kingsleyae
ENSACLG00000000823	trub1	90	70.400	ENSPSIG00000012877	TRUB1	86	70.400	Pelodiscus_sinensis
ENSACLG00000000823	trub1	95	77.736	ENSPMGG00000000075	trub1	93	77.736	Periophthalmus_magnuspinnatus
ENSACLG00000000823	trub1	96	64.419	ENSPEMG00000011156	Trub1	79	64.419	Peromyscus_maniculatus_bairdii
ENSACLG00000000823	trub1	88	68.852	ENSPCIG00000009729	TRUB1	68	67.470	Phascolarctos_cinereus
ENSACLG00000000823	trub1	93	83.784	ENSPFOG00000009950	trub1	95	83.784	Poecilia_formosa
ENSACLG00000000823	trub1	98	81.250	ENSPLAG00000013855	trub1	95	81.250	Poecilia_latipinna
ENSACLG00000000823	trub1	100	80.576	ENSPMEG00000009064	trub1	100	80.576	Poecilia_mexicana
ENSACLG00000000823	trub1	98	81.250	ENSPREG00000003343	trub1	98	81.250	Poecilia_reticulata
ENSACLG00000000823	trub1	91	66.667	ENSPPYG00000002676	TRUB1	72	66.667	Pongo_abelii
ENSACLG00000000823	trub1	91	61.111	ENSPCAG00000008427	TRUB1	74	60.385	Procavia_capensis
ENSACLG00000000823	trub1	91	61.508	ENSPCOG00000024360	TRUB1	71	60.714	Propithecus_coquereli
ENSACLG00000000823	trub1	73	68.317	ENSPVAG00000007575	TRUB1	77	68.317	Pteropus_vampyrus
ENSACLG00000000823	trub1	100	99.640	ENSPNYG00000018614	trub1	100	99.640	Pundamilia_nyererei
ENSACLG00000000823	trub1	94	64.368	ENSPNAG00000006881	trub1	85	63.602	Pygocentrus_nattereri
ENSACLG00000000823	trub1	91	64.683	ENSRNOG00000017321	Trub1	74	64.683	Rattus_norvegicus
ENSACLG00000000823	trub1	91	58.661	ENSRBIG00000033423	TRUB1	70	58.661	Rhinopithecus_bieti
ENSACLG00000000823	trub1	91	67.063	ENSRROG00000033902	TRUB1	72	67.063	Rhinopithecus_roxellana
ENSACLG00000000823	trub1	91	67.063	ENSSBOG00000024237	TRUB1	72	67.063	Saimiri_boliviensis_boliviensis
ENSACLG00000000823	trub1	77	69.767	ENSSHAG00000009346	TRUB1	72	69.767	Sarcophilus_harrisii
ENSACLG00000000823	trub1	93	77.992	ENSSFOG00015022124	trub1	88	77.992	Scleropages_formosus
ENSACLG00000000823	trub1	97	86.131	ENSSMAG00000001020	trub1	98	86.131	Scophthalmus_maximus
ENSACLG00000000823	trub1	97	85.130	ENSSDUG00000016414	trub1	97	85.130	Seriola_dumerili
ENSACLG00000000823	trub1	98	84.615	ENSSLDG00000015486	trub1	98	84.615	Seriola_lalandi_dorsalis
ENSACLG00000000823	trub1	100	65.357	ENSSPUG00000001642	TRUB1	96	65.357	Sphenodon_punctatus
ENSACLG00000000823	trub1	100	85.252	ENSSPAG00000001217	trub1	98	86.447	Stegastes_partitus
ENSACLG00000000823	trub1	91	67.063	ENSSSCG00000010653	TRUB1	73	67.063	Sus_scrofa
ENSACLG00000000823	trub1	94	65.299	ENSTGUG00000010971	TRUB1	98	64.000	Taeniopygia_guttata
ENSACLG00000000823	trub1	78	56.881	ENSTBEG00000002880	TRUB1	86	56.881	Tupaia_belangeri
ENSACLG00000000823	trub1	73	67.822	ENSTTRG00000005767	TRUB1	77	67.822	Tursiops_truncatus
ENSACLG00000000823	trub1	91	67.460	ENSUAMG00000024876	TRUB1	72	67.460	Ursus_americanus
ENSACLG00000000823	trub1	91	67.460	ENSUMAG00000002411	TRUB1	75	67.460	Ursus_maritimus
ENSACLG00000000823	trub1	91	67.460	ENSVPAG00000005507	TRUB1	72	67.460	Vicugna_pacos
ENSACLG00000000823	trub1	91	67.460	ENSVVUG00000010085	TRUB1	61	67.460	Vulpes_vulpes
ENSACLG00000000823	trub1	88	67.755	ENSXETG00000023828	trub1	88	67.755	Xenopus_tropicalis
ENSACLG00000000823	trub1	87	86.364	ENSXCOG00000017847	trub1	86	86.364	Xiphophorus_couchianus
ENSACLG00000000823	trub1	100	80.216	ENSXMAG00000014701	trub1	100	80.216	Xiphophorus_maculatus