EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000001649 (Gene tree)
Gene ID: 113008484
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 5563 bases
Position: chr2:35127366-35132928
Accession: 113008484
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000002374	Smg4_UPF3	PF03467.15	1.1e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000002425	-	4149	-	ENSACLP00000002374	459 (aa)	XP_026001720	UPI000329E36E

Gene Model

Click here to download ENSACLG00000001649's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000001649's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000001649	upf3b	63	65.798	ENSG00000125351	UPF3B	96	66.507	Homo_sapiens
ENSACLG00000001649	upf3b	100	85.403	ENSAPOG00000012775	upf3b	100	84.967	Acanthochromis_polyacanthus
ENSACLG00000001649	upf3b	97	58.134	ENSAMEG00000000163	UPF3B	96	56.739	Ailuropoda_melanoleuca
ENSACLG00000001649	upf3b	92	50.346	ENSAMEG00000004259	UPF3A	50	52.766	Ailuropoda_melanoleuca
ENSACLG00000001649	upf3b	100	83.369	ENSACIG00000013582	upf3b	100	84.449	Amphilophus_citrinellus
ENSACLG00000001649	upf3b	100	83.878	ENSAOCG00000000706	upf3b	100	83.442	Amphiprion_ocellaris
ENSACLG00000001649	upf3b	100	84.967	ENSAPEG00000005545	upf3b	100	84.532	Amphiprion_percula
ENSACLG00000001649	upf3b	100	83.226	ENSATEG00000018742	upf3b	100	83.656	Anabas_testudineus
ENSACLG00000001649	upf3b	89	51.202	ENSACAG00000001540	UPF3A	96	43.826	Anolis_carolinensis
ENSACLG00000001649	upf3b	99	58.650	ENSACAG00000003625	UPF3B	100	56.660	Anolis_carolinensis
ENSACLG00000001649	upf3b	97	54.644	ENSANAG00000025598	-	98	50.533	Aotus_nancymaae
ENSACLG00000001649	upf3b	97	58.099	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSACLG00000001649	upf3b	67	82.239	ENSAMXG00000000199	upf3b	98	82.239	Astyanax_mexicanus
ENSACLG00000001649	upf3b	56	68.015	ENSBTAG00000035615	UPF3B	88	67.279	Bos_taurus
ENSACLG00000001649	upf3b	97	57.484	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSACLG00000001649	upf3b	97	55.531	ENSCAFG00000018426	UPF3B	98	56.957	Canis_familiaris
ENSACLG00000001649	upf3b	97	53.362	ENSCAFG00020004074	UPF3B	96	54.783	Canis_lupus_dingo
ENSACLG00000001649	upf3b	97	56.513	ENSCHIG00000000247	-	96	55.391	Capra_hircus
ENSACLG00000001649	upf3b	97	56.303	ENSCHIG00000018011	-	88	66.912	Capra_hircus
ENSACLG00000001649	upf3b	92	40.995	ENSCHIG00000011454	-	50	48.069	Capra_hircus
ENSACLG00000001649	upf3b	97	55.076	ENSTSYG00000014690	UPF3B	96	61.395	Carlito_syrichta
ENSACLG00000001649	upf3b	56	50.391	ENSCCAG00000021964	-	82	50.391	Cebus_capucinus
ENSACLG00000001649	upf3b	93	39.503	ENSCCAG00000029813	-	69	53.695	Cebus_capucinus
ENSACLG00000001649	upf3b	63	65.798	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSACLG00000001649	upf3b	63	66.450	ENSCLAG00000003260	UPF3B	96	58.785	Chinchilla_lanigera
ENSACLG00000001649	upf3b	63	63.125	ENSCSAG00000018348	UPF3B	96	55.696	Chlorocebus_sabaeus
ENSACLG00000001649	upf3b	94	59.685	ENSCPBG00000020685	UPF3B	94	59.234	Chrysemys_picta_bellii
ENSACLG00000001649	upf3b	56	67.647	ENSCANG00000029220	UPF3B	85	67.279	Colobus_angolensis_palliatus
ENSACLG00000001649	upf3b	68	56.325	ENSCGRG00001013643	-	90	54.030	Cricetulus_griseus_chok1gshd
ENSACLG00000001649	upf3b	94	54.185	ENSCGRG00001006858	-	94	55.385	Cricetulus_griseus_chok1gshd
ENSACLG00000001649	upf3b	86	57.357	ENSCGRG00000007627	Upf3b	93	58.706	Cricetulus_griseus_crigri
ENSACLG00000001649	upf3b	99	74.948	ENSCSEG00000002046	upf3b	99	75.420	Cynoglossus_semilaevis
ENSACLG00000001649	upf3b	100	80.000	ENSCVAG00000005030	upf3b	100	79.565	Cyprinodon_variegatus
ENSACLG00000001649	upf3b	94	73.394	ENSDARG00000000489	upf3b	99	69.462	Danio_rerio
ENSACLG00000001649	upf3b	97	56.540	ENSDNOG00000008665	UPF3B	96	56.329	Dasypus_novemcinctus
ENSACLG00000001649	upf3b	77	50.700	ENSDNOG00000034391	UPF3A	51	53.648	Dasypus_novemcinctus
ENSACLG00000001649	upf3b	97	57.484	ENSDORG00000006077	Upf3b	94	57.556	Dipodomys_ordii
ENSACLG00000001649	upf3b	97	56.833	ENSEASG00005012919	UPF3B	96	56.399	Equus_asinus_asinus
ENSACLG00000001649	upf3b	97	56.833	ENSECAG00000016947	UPF3B	96	56.399	Equus_caballus
ENSACLG00000001649	upf3b	99	68.182	ENSELUG00000020389	upf3b	100	70.722	Esox_lucius
ENSACLG00000001649	upf3b	97	55.388	ENSFCAG00000004388	UPF3B	94	58.000	Felis_catus
ENSACLG00000001649	upf3b	97	56.795	ENSFALG00000001569	UPF3B	94	55.765	Ficedula_albicollis
ENSACLG00000001649	upf3b	97	57.918	ENSFDAG00000018869	UPF3B	96	57.484	Fukomys_damarensis
ENSACLG00000001649	upf3b	100	80.303	ENSFHEG00000017895	upf3b	100	80.303	Fundulus_heteroclitus
ENSACLG00000001649	upf3b	100	67.653	ENSGMOG00000001621	upf3b	100	67.516	Gadus_morhua
ENSACLG00000001649	upf3b	99	56.818	ENSGALG00000008618	UPF3B	100	56.818	Gallus_gallus
ENSACLG00000001649	upf3b	100	78.043	ENSGAFG00000000829	upf3b	100	78.696	Gambusia_affinis
ENSACLG00000001649	upf3b	100	77.634	ENSGACG00000017435	upf3b	94	89.062	Gasterosteus_aculeatus
ENSACLG00000001649	upf3b	94	64.045	ENSGAGG00000001219	UPF3B	94	62.838	Gopherus_agassizii
ENSACLG00000001649	upf3b	63	65.798	ENSGGOG00000023995	UPF3B	96	57.267	Gorilla_gorilla
ENSACLG00000001649	upf3b	100	99.564	ENSHBUG00000017393	upf3b	100	99.564	Haplochromis_burtoni
ENSACLG00000001649	upf3b	97	57.701	ENSHGLG00000019582	-	96	57.050	Heterocephalus_glaber_female
ENSACLG00000001649	upf3b	72	54.885	ENSHGLG00000011189	-	54	67.532	Heterocephalus_glaber_female
ENSACLG00000001649	upf3b	97	54.881	ENSHGLG00100002042	-	96	53.233	Heterocephalus_glaber_male
ENSACLG00000001649	upf3b	81	51.908	ENSHGLG00100001889	-	55	67.532	Heterocephalus_glaber_male
ENSACLG00000001649	upf3b	100	72.708	ENSHCOG00000017004	upf3b	100	72.979	Hippocampus_comes
ENSACLG00000001649	upf3b	99	70.474	ENSIPUG00000019249	upf3b	99	70.690	Ictalurus_punctatus
ENSACLG00000001649	upf3b	97	57.918	ENSSTOG00000001101	UPF3B	96	56.522	Ictidomys_tridecemlineatus
ENSACLG00000001649	upf3b	68	61.145	ENSJJAG00000000053	Upf3b	94	56.637	Jaculus_jaculus
ENSACLG00000001649	upf3b	100	83.224	ENSKMAG00000020300	upf3b	100	83.660	Kryptolebias_marmoratus
ENSACLG00000001649	upf3b	60	87.004	ENSLBEG00000028689	upf3b	59	87.313	Labrus_bergylta
ENSACLG00000001649	upf3b	97	61.707	ENSLACG00000008691	UPF3B	98	61.388	Latimeria_chalumnae
ENSACLG00000001649	upf3b	68	73.885	ENSLOCG00000015238	upf3b	99	66.811	Lepisosteus_oculatus
ENSACLG00000001649	upf3b	92	53.721	ENSLOCG00000002665	upf3a	87	46.539	Lepisosteus_oculatus
ENSACLG00000001649	upf3b	97	56.959	ENSLAFG00000001267	UPF3B	96	56.223	Loxodonta_africana
ENSACLG00000001649	upf3b	63	65.472	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSACLG00000001649	upf3b	87	45.050	ENSMMUG00000007449	UPF3A	50	54.585	Macaca_mulatta
ENSACLG00000001649	upf3b	63	65.472	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSACLG00000001649	upf3b	63	65.472	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSACLG00000001649	upf3b	87	45.792	ENSMLEG00000014726	UPF3A	53	54.348	Mandrillus_leucophaeus
ENSACLG00000001649	upf3b	63	65.798	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSACLG00000001649	upf3b	100	99.782	ENSMZEG00005007871	upf3b	100	99.782	Maylandia_zebra
ENSACLG00000001649	upf3b	84	58.015	ENSMGAG00000007728	UPF3B	99	58.015	Meleagris_gallopavo
ENSACLG00000001649	upf3b	85	50.495	ENSMGAG00000014837	UPF3A	95	42.356	Meleagris_gallopavo
ENSACLG00000001649	upf3b	94	53.437	ENSMAUG00000008705	Upf3b	94	55.088	Mesocricetus_auratus
ENSACLG00000001649	upf3b	56	67.883	ENSMICG00000001743	UPF3B	85	67.279	Microcebus_murinus
ENSACLG00000001649	upf3b	94	54.526	ENSMOCG00000017893	Upf3b	94	55.269	Microtus_ochrogaster
ENSACLG00000001649	upf3b	100	79.393	ENSMMOG00000004183	upf3b	100	79.393	Mola_mola
ENSACLG00000001649	upf3b	87	62.189	ENSMODG00000010232	UPF3B	93	60.302	Monodelphis_domestica
ENSACLG00000001649	upf3b	92	50.345	ENSMODG00000003159	UPF3A	53	55.603	Monodelphis_domestica
ENSACLG00000001649	upf3b	100	82.796	ENSMALG00000008042	upf3b	100	82.581	Monopterus_albus
ENSACLG00000001649	upf3b	94	54.767	MGP_CAROLIEiJ_G0032999	Upf3b	94	55.973	Mus_caroli
ENSACLG00000001649	upf3b	94	54.989	ENSMUSG00000036572	Upf3b	94	56.195	Mus_musculus
ENSACLG00000001649	upf3b	94	55.211	MGP_PahariEiJ_G0031543	Upf3b	94	56.416	Mus_pahari
ENSACLG00000001649	upf3b	94	54.989	MGP_SPRETEiJ_G0034152	Upf3b	94	56.195	Mus_spretus
ENSACLG00000001649	upf3b	97	58.099	ENSMPUG00000001531	UPF3B	98	56.739	Mustela_putorius_furo
ENSACLG00000001649	upf3b	87	46.437	ENSMLUG00000015905	UPF3A	54	53.617	Myotis_lucifugus
ENSACLG00000001649	upf3b	97	58.099	ENSMLUG00000010821	UPF3B	94	58.315	Myotis_lucifugus
ENSACLG00000001649	upf3b	94	55.432	ENSNGAG00000008231	Upf3b	94	55.088	Nannospalax_galili
ENSACLG00000001649	upf3b	92	55.765	ENSNLEG00000014897	UPF3B	86	59.709	Nomascus_leucogenys
ENSACLG00000001649	upf3b	97	56.494	ENSODEG00000002186	-	96	55.652	Octodon_degus
ENSACLG00000001649	upf3b	100	95.690	ENSONIG00000002536	upf3b	100	95.690	Oreochromis_niloticus
ENSACLG00000001649	upf3b	82	44.186	ENSOANG00000006985	-	55	44.348	Ornithorhynchus_anatinus
ENSACLG00000001649	upf3b	97	55.858	ENSOCUG00000010213	UPF3B	96	54.968	Oryctolagus_cuniculus
ENSACLG00000001649	upf3b	100	77.996	ENSORLG00000001026	upf3b	100	78.214	Oryzias_latipes
ENSACLG00000001649	upf3b	100	77.560	ENSORLG00020003758	upf3b	100	77.778	Oryzias_latipes_hni
ENSACLG00000001649	upf3b	92	49.213	ENSORLG00020014317	upf3a	55	63.910	Oryzias_latipes_hni
ENSACLG00000001649	upf3b	100	77.560	ENSORLG00015012954	upf3b	100	77.778	Oryzias_latipes_hsok
ENSACLG00000001649	upf3b	97	46.970	ENSOMEG00000014425	upf3a	82	44.878	Oryzias_melastigma
ENSACLG00000001649	upf3b	100	78.431	ENSOMEG00000014736	upf3b	100	78.649	Oryzias_melastigma
ENSACLG00000001649	upf3b	63	65.798	ENSOGAG00000004643	-	96	56.957	Otolemur_garnettii
ENSACLG00000001649	upf3b	97	56.061	ENSOGAG00000033003	-	98	54.762	Otolemur_garnettii
ENSACLG00000001649	upf3b	90	45.411	ENSOARG00000007869	-	55	51.282	Ovis_aries
ENSACLG00000001649	upf3b	97	56.159	ENSOARG00000016051	-	96	55.042	Ovis_aries
ENSACLG00000001649	upf3b	63	65.798	ENSPPAG00000040390	UPF3B	96	57.267	Pan_paniscus
ENSACLG00000001649	upf3b	97	58.531	ENSPPRG00000023536	UPF3B	94	57.778	Panthera_pardus
ENSACLG00000001649	upf3b	97	56.871	ENSPTIG00000015264	UPF3B	85	66.912	Panthera_tigris_altaica
ENSACLG00000001649	upf3b	63	65.798	ENSPTRG00000022228	UPF3B	96	57.267	Pan_troglodytes
ENSACLG00000001649	upf3b	63	65.798	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSACLG00000001649	upf3b	99	67.819	ENSPKIG00000019226	upf3b	92	83.803	Paramormyrops_kingsleyae
ENSACLG00000001649	upf3b	90	47.588	ENSPKIG00000004422	upf3a	50	57.205	Paramormyrops_kingsleyae
ENSACLG00000001649	upf3b	57	65.283	ENSPSIG00000005833	UPF3B	86	66.393	Pelodiscus_sinensis
ENSACLG00000001649	upf3b	92	50.350	ENSPSIG00000007468	UPF3A	55	55.459	Pelodiscus_sinensis
ENSACLG00000001649	upf3b	56	88.281	ENSPMGG00000016067	upf3b	95	86.973	Periophthalmus_magnuspinnatus
ENSACLG00000001649	upf3b	94	55.088	ENSPEMG00000012352	Upf3b	94	56.071	Peromyscus_maniculatus_bairdii
ENSACLG00000001649	upf3b	89	59.466	ENSPCIG00000028914	UPF3B	83	57.538	Phascolarctos_cinereus
ENSACLG00000001649	upf3b	77	53.812	ENSPCIG00000019590	-	64	67.808	Phascolarctos_cinereus
ENSACLG00000001649	upf3b	93	49.206	ENSPLAG00000011960	upf3a	62	71.963	Poecilia_latipinna
ENSACLG00000001649	upf3b	100	78.913	ENSPLAG00000019922	upf3b	100	79.565	Poecilia_latipinna
ENSACLG00000001649	upf3b	100	78.913	ENSPLAG00000005105	upf3b	100	79.565	Poecilia_latipinna
ENSACLG00000001649	upf3b	100	78.913	ENSPMEG00000023532	upf3b	100	79.565	Poecilia_mexicana
ENSACLG00000001649	upf3b	56	67.399	ENSPPYG00000020675	-	82	67.033	Pongo_abelii
ENSACLG00000001649	upf3b	97	55.485	ENSPCAG00000009464	UPF3B	96	54.968	Procavia_capensis
ENSACLG00000001649	upf3b	97	58.315	ENSPCOG00000021960	UPF3B	85	66.912	Propithecus_coquereli
ENSACLG00000001649	upf3b	97	47.689	ENSPVAG00000014075	UPF3B	61	55.593	Pteropus_vampyrus
ENSACLG00000001649	upf3b	100	99.346	ENSPNYG00000009846	upf3b	100	99.346	Pundamilia_nyererei
ENSACLG00000001649	upf3b	99	74.138	ENSPNAG00000021528	upf3b	99	86.047	Pygocentrus_nattereri
ENSACLG00000001649	upf3b	94	54.989	ENSRNOG00000039994	Upf3b	94	56.195	Rattus_norvegicus
ENSACLG00000001649	upf3b	87	46.287	ENSRBIG00000034007	UPF3A	52	54.585	Rhinopithecus_bieti
ENSACLG00000001649	upf3b	81	52.926	ENSRBIG00000037219	UPF3B	95	58.133	Rhinopithecus_bieti
ENSACLG00000001649	upf3b	63	65.798	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSACLG00000001649	upf3b	97	57.701	ENSSBOG00000019740	UPF3B	99	65.072	Saimiri_boliviensis_boliviensis
ENSACLG00000001649	upf3b	93	51.501	ENSSHAG00000009895	UPF3A	54	54.936	Sarcophilus_harrisii
ENSACLG00000001649	upf3b	98	56.757	ENSSHAG00000008634	UPF3B	99	55.115	Sarcophilus_harrisii
ENSACLG00000001649	upf3b	99	70.282	ENSSFOG00015005614	upf3b	99	69.717	Scleropages_formosus
ENSACLG00000001649	upf3b	100	80.472	ENSSMAG00000012913	upf3b	100	90.234	Scophthalmus_maximus
ENSACLG00000001649	upf3b	100	86.334	ENSSDUG00000005682	upf3b	100	87.202	Seriola_dumerili
ENSACLG00000001649	upf3b	92	42.891	ENSSDUG00000009680	upf3a	55	75.281	Seriola_dumerili
ENSACLG00000001649	upf3b	100	87.419	ENSSLDG00000003130	upf3b	100	86.985	Seriola_lalandi_dorsalis
ENSACLG00000001649	upf3b	86	55.882	ENSSARG00000004147	UPF3B	93	58.981	Sorex_araneus
ENSACLG00000001649	upf3b	99	56.735	ENSSPUG00000013082	UPF3B	100	55.533	Sphenodon_punctatus
ENSACLG00000001649	upf3b	100	86.057	ENSSPAG00000009989	upf3b	100	86.492	Stegastes_partitus
ENSACLG00000001649	upf3b	88	45.146	ENSSSCG00000024679	UPF3A	55	53.648	Sus_scrofa
ENSACLG00000001649	upf3b	97	57.388	ENSSSCG00000012617	UPF3B	96	55.870	Sus_scrofa
ENSACLG00000001649	upf3b	87	53.883	ENSTGUG00000009493	UPF3A	98	46.250	Taeniopygia_guttata
ENSACLG00000001649	upf3b	90	62.110	ENSTGUG00000003413	UPF3B	96	60.911	Taeniopygia_guttata
ENSACLG00000001649	upf3b	100	78.742	ENSTRUG00000010645	upf3b	100	78.091	Takifugu_rubripes
ENSACLG00000001649	upf3b	100	67.888	ENSTNIG00000015763	upf3b	100	64.009	Tetraodon_nigroviridis
ENSACLG00000001649	upf3b	94	48.596	ENSTBEG00000003229	UPF3B	74	57.509	Tupaia_belangeri
ENSACLG00000001649	upf3b	97	56.182	ENSUAMG00000024565	UPF3B	96	54.565	Ursus_americanus
ENSACLG00000001649	upf3b	89	55.097	ENSUMAG00000002150	UPF3B	87	54.258	Ursus_maritimus
ENSACLG00000001649	upf3b	87	44.282	ENSVPAG00000003525	UPF3A	56	54.585	Vicugna_pacos
ENSACLG00000001649	upf3b	84	57.750	ENSVPAG00000009971	UPF3B	95	56.391	Vicugna_pacos
ENSACLG00000001649	upf3b	97	53.145	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSACLG00000001649	upf3b	94	55.204	ENSXETG00000007440	upf3b	84	74.742	Xenopus_tropicalis
ENSACLG00000001649	upf3b	87	45.763	ENSXETG00000002572	upf3a	54	53.846	Xenopus_tropicalis
ENSACLG00000001649	upf3b	100	71.522	ENSXCOG00000016586	upf3b	97	89.744	Xiphophorus_couchianus
ENSACLG00000001649	upf3b	100	78.043	ENSXMAG00000013680	upf3b	100	78.696	Xiphophorus_maculatus