EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000001712 (Gene tree)
Gene ID: 113010885
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 7837 bases
Position: chr18:20974438-20982274
Accession: 113010885
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000002505	PRP38	PF03371.15	4.2e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000002561	-	3374	-	ENSACLP00000002505	461 (aa)	XP_026005932	UPI000329AD9D

Gene Model

Click here to download ENSACLG00000001712's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000001712's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000001712	prpf38b	62	94.792	ENSAPOG00000005297	prpf38b	98	91.503	Acanthochromis_polyacanthus
ENSACLG00000001712	prpf38b	62	94.792	ENSAPOG00000012791	-	98	91.503	Acanthochromis_polyacanthus
ENSACLG00000001712	prpf38b	62	94.444	ENSAOCG00000012675	prpf38b	89	91.721	Amphiprion_ocellaris
ENSACLG00000001712	prpf38b	62	94.097	ENSAPEG00000010974	prpf38b	94	96.951	Amphiprion_percula
ENSACLG00000001712	prpf38b	98	69.512	ENSDARG00000053101	prpf38b	90	93.506	Danio_rerio
ENSACLG00000001712	prpf38b	98	85.683	ENSFHEG00000002861	prpf38b	98	85.683	Fundulus_heteroclitus
ENSACLG00000001712	prpf38b	99	83.298	ENSGACG00000015154	prpf38b	99	85.439	Gasterosteus_aculeatus
ENSACLG00000001712	prpf38b	100	99.783	ENSHBUG00000022496	prpf38b	100	99.783	Haplochromis_burtoni
ENSACLG00000001712	prpf38b	96	67.865	ENSIPUG00000014942	prpf38b	95	63.656	Ictalurus_punctatus
ENSACLG00000001712	prpf38b	98	87.118	ENSLBEG00000024500	prpf38b	89	94.512	Labrus_bergylta
ENSACLG00000001712	prpf38b	98	92.593	ENSMAMG00000010641	prpf38b	98	92.810	Mastacembelus_armatus
ENSACLG00000001712	prpf38b	100	100.000	ENSMZEG00005025536	prpf38b	100	100.000	Maylandia_zebra
ENSACLG00000001712	prpf38b	100	99.783	ENSPNYG00000007625	prpf38b	100	99.783	Pundamilia_nyererei
ENSACLG00000001712	prpf38b	98	92.358	ENSSPAG00000023160	-	98	92.576	Stegastes_partitus