EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000002094 (Gene tree)
Gene ID: 113011265
Gene Symbol: -
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 3270 bases
Position: chr18:21255746-21259015
Accession: 113011265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000003061	RRM_1	PF00076.22	1.6e-25	1	1
ENSACLP00000003052	RRM_1	PF00076.22	1.7e-25	1	1
ENSACLP00000003044	RRM_1	PF00076.22	1.7e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000003124	-	640	-	ENSACLP00000003052	180 (aa)	XP_026006510	UPI00032A13A5
ENSACLT00000003133	-	571	-	ENSACLP00000003061	176 (aa)	XP_026006511	UPI000329A6BC
ENSACLT00000003112	-	554	-	ENSACLP00000003044	180 (aa)	-	UPI000329C8C2

Gene Model

Click here to download ENSACLG00000002094's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000002094's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000002094	-	72	42.254	ENSACLG00000011230	MSI1	61	42.466
ENSACLG00000002094	-	66	38.889	ENSACLG00000019504	-	68	38.889
ENSACLG00000002094	-	66	35.714	ENSACLG00000026497	hnrnpd	52	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000002094	-	73	92.481	ENSAPOG00000004458	cirbpa	100	72.396	Acanthochromis_polyacanthus
ENSACLG00000002094	-	100	97.159	ENSACIG00000016116	cirbpa	100	97.159	Amphilophus_citrinellus
ENSACLG00000002094	-	99	71.585	ENSAOCG00000016212	cirbpa	100	73.118	Amphiprion_ocellaris
ENSACLG00000002094	-	100	70.811	ENSAPEG00000011989	cirbpa	100	73.797	Amphiprion_percula
ENSACLG00000002094	-	100	87.912	ENSATEG00000014985	cirbpa	99	89.011	Anabas_testudineus
ENSACLG00000002094	-	100	57.282	ENSAMXG00000015612	cirbpb	82	61.582	Astyanax_mexicanus
ENSACLG00000002094	-	100	64.948	ENSCSEG00000014344	cirbpa	100	63.452	Cynoglossus_semilaevis
ENSACLG00000002094	-	100	81.522	ENSCVAG00000004853	cirbpa	100	81.522	Cyprinodon_variegatus
ENSACLG00000002094	-	100	57.447	ENSDARG00000103672	cirbpa	100	57.979	Danio_rerio
ENSACLG00000002094	-	89	59.524	ENSDARG00000013351	cirbpb	92	58.654	Danio_rerio
ENSACLG00000002094	-	99	79.888	ENSFHEG00000002580	cirbpa	100	84.358	Fundulus_heteroclitus
ENSACLG00000002094	-	99	50.495	ENSGMOG00000007179	cirbpb	98	49.239	Gadus_morhua
ENSACLG00000002094	-	100	76.471	ENSGAFG00000008654	cirbpa	98	82.514	Gambusia_affinis
ENSACLG00000002094	-	100	63.212	ENSGACG00000015206	cirbpa	100	61.856	Gasterosteus_aculeatus
ENSACLG00000002094	-	100	100.000	ENSHBUG00000022060	cirbpa	100	100.000	Haplochromis_burtoni
ENSACLG00000002094	-	100	82.022	ENSKMAG00000005905	cirbpa	100	81.564	Kryptolebias_marmoratus
ENSACLG00000002094	-	61	79.817	ENSLBEG00000027731	-	66	83.951	Labrus_bergylta
ENSACLG00000002094	-	100	67.614	ENSLBEG00000000292	cirbpa	100	67.614	Labrus_bergylta
ENSACLG00000002094	-	100	83.696	ENSMAMG00000010168	cirbpa	100	86.413	Mastacembelus_armatus
ENSACLG00000002094	-	100	100.000	ENSMZEG00005025577	-	100	100.000	Maylandia_zebra
ENSACLG00000002094	-	100	87.293	ENSMALG00000020092	cirbpa	99	90.055	Monopterus_albus
ENSACLG00000002094	-	100	100.000	ENSNBRG00000019658	cirbpa	100	100.000	Neolamprologus_brichardi
ENSACLG00000002094	-	100	98.295	ENSONIG00000010169	cirbpa	100	98.295	Oreochromis_niloticus
ENSACLG00000002094	-	100	83.708	ENSORLG00000015433	cirbpa	100	89.326	Oryzias_latipes
ENSACLG00000002094	-	100	83.708	ENSORLG00020016909	cirbpa	100	89.326	Oryzias_latipes_hni
ENSACLG00000002094	-	100	83.708	ENSORLG00015016636	cirbpa	100	89.326	Oryzias_latipes_hsok
ENSACLG00000002094	-	100	86.441	ENSOMEG00000021469	cirbpa	73	90.395	Oryzias_melastigma
ENSACLG00000002094	-	99	61.497	ENSPKIG00000010561	cirbpa	99	63.102	Paramormyrops_kingsleyae
ENSACLG00000002094	-	99	73.656	ENSPMGG00000017342	cirbpa	94	74.054	Periophthalmus_magnuspinnatus
ENSACLG00000002094	-	99	80.978	ENSPFOG00000015653	cirbpa	99	84.239	Poecilia_formosa
ENSACLG00000002094	-	100	81.081	ENSPLAG00000011125	cirbpa	100	84.324	Poecilia_latipinna
ENSACLG00000002094	-	100	81.081	ENSPMEG00000013878	cirbpa	100	84.324	Poecilia_mexicana
ENSACLG00000002094	-	99	86.188	ENSPREG00000018042	cirbpa	96	86.740	Poecilia_reticulata
ENSACLG00000002094	-	99	100.000	ENSPNYG00000007198	-	98	100.000	Pundamilia_nyererei
ENSACLG00000002094	-	99	59.799	ENSPNAG00000019997	cirbpb	100	57.635	Pygocentrus_nattereri
ENSACLG00000002094	-	99	57.838	ENSSFOG00015009951	cirbpa	100	59.788	Scleropages_formosus
ENSACLG00000002094	-	99	60.870	ENSSFOG00015005346	cirbpb	100	61.702	Scleropages_formosus
ENSACLG00000002094	-	100	69.543	ENSSMAG00000002412	cirbpa	100	63.131	Scophthalmus_maximus
ENSACLG00000002094	-	100	75.568	ENSSDUG00000016099	cirbpa	100	69.061	Seriola_dumerili
ENSACLG00000002094	-	63	97.368	ENSSLDG00000011320	cirbpa	55	97.368	Seriola_lalandi_dorsalis
ENSACLG00000002094	-	100	77.095	ENSSPAG00000023037	cirbpa	99	67.045	Stegastes_partitus
ENSACLG00000002094	-	100	77.841	ENSTRUG00000010187	cirbpa	100	77.841	Takifugu_rubripes
ENSACLG00000002094	-	100	74.863	ENSTNIG00000000450	cirbpa	100	77.049	Tetraodon_nigroviridis
ENSACLG00000002094	-	99	85.635	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSACLG00000002094	-	100	85.405	ENSXMAG00000019336	cirbpa	98	87.845	Xiphophorus_maculatus