EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000002824 (Gene tree)
Gene ID: 113024466
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 7084 bases
Position: chr6:29920414-29927497
Accession: 113024466
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000004168	PPR	PF01535.20	1.6e-19	1	2
ENSACLP00000004168	PPR	PF01535.20	1.6e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000004256	-	3535	-	ENSACLP00000004168	708 (aa)	XP_026027370	UPI000E3FD852

Gene Model

Click here to download ENSACLG00000002824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000002824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000002824	ptcd1	80	48.480	ENSG00000248919	ATP5MF-PTCD1	78	49.233	Homo_sapiens
ENSACLG00000002824	ptcd1	80	49.147	ENSG00000106246	PTCD1	83	49.233	Homo_sapiens
ENSACLG00000002824	ptcd1	88	68.396	ENSAPOG00000010679	ptcd1	96	68.396	Acanthochromis_polyacanthus
ENSACLG00000002824	ptcd1	83	49.918	ENSAMEG00000006224	-	80	49.918	Ailuropoda_melanoleuca
ENSACLG00000002824	ptcd1	93	83.358	ENSACIG00000017861	ptcd1	97	83.358	Amphilophus_citrinellus
ENSACLG00000002824	ptcd1	99	67.932	ENSAOCG00000020741	-	99	67.932	Amphiprion_ocellaris
ENSACLG00000002824	ptcd1	88	69.340	ENSAOCG00000022617	ptcd1	94	69.340	Amphiprion_ocellaris
ENSACLG00000002824	ptcd1	99	68.073	ENSAPEG00000022632	ptcd1	99	68.073	Amphiprion_percula
ENSACLG00000002824	ptcd1	100	70.629	ENSATEG00000007016	ptcd1	100	70.629	Anabas_testudineus
ENSACLG00000002824	ptcd1	80	49.576	ENSAPLG00000006862	-	91	49.576	Anas_platyrhynchos
ENSACLG00000002824	ptcd1	81	50.083	ENSACAG00000012871	-	78	50.083	Anolis_carolinensis
ENSACLG00000002824	ptcd1	80	48.993	ENSANAG00000035790	-	86	49.079	Aotus_nancymaae
ENSACLG00000002824	ptcd1	82	51.515	ENSAMXG00000037292	ptcd1	87	51.675	Astyanax_mexicanus
ENSACLG00000002824	ptcd1	84	47.735	ENSBTAG00000020440	-	75	47.896	Bos_taurus
ENSACLG00000002824	ptcd1	80	48.900	ENSCJAG00000015815	-	84	48.986	Callithrix_jacchus
ENSACLG00000002824	ptcd1	83	49.672	ENSCAFG00000015055	-	80	49.672	Canis_familiaris
ENSACLG00000002824	ptcd1	83	49.591	ENSCAFG00020014480	-	80	49.591	Canis_lupus_dingo
ENSACLG00000002824	ptcd1	86	48.480	ENSCHIG00000027000	-	87	48.480	Capra_hircus
ENSACLG00000002824	ptcd1	80	48.087	ENSTSYG00000029495	-	83	48.173	Carlito_syrichta
ENSACLG00000002824	ptcd1	80	48.567	ENSCAPG00000014660	-	92	47.403	Cavia_aperea
ENSACLG00000002824	ptcd1	80	49.241	ENSCPOG00000001780	-	86	48.377	Cavia_porcellus
ENSACLG00000002824	ptcd1	80	48.826	ENSCCAG00000034025	-	84	49.239	Cebus_capucinus
ENSACLG00000002824	ptcd1	80	48.311	ENSCATG00000040859	-	83	48.398	Cercocebus_atys
ENSACLG00000002824	ptcd1	84	47.458	ENSCLAG00000006354	-	88	47.567	Chinchilla_lanigera
ENSACLG00000002824	ptcd1	76	48.571	ENSCSAG00000017794	-	82	48.663	Chlorocebus_sabaeus
ENSACLG00000002824	ptcd1	82	47.209	ENSCPBG00000020866	-	84	47.368	Chrysemys_picta_bellii
ENSACLG00000002824	ptcd1	82	48.764	ENSCANG00000023441	-	86	49.753	Colobus_angolensis_palliatus
ENSACLG00000002824	ptcd1	82	49.010	ENSCGRG00001023686	Ptcd1	85	49.505	Cricetulus_griseus_chok1gshd
ENSACLG00000002824	ptcd1	82	49.010	ENSCGRG00000015031	Ptcd1	85	49.505	Cricetulus_griseus_crigri
ENSACLG00000002824	ptcd1	98	57.961	ENSCSEG00000002378	ptcd1	99	58.101	Cynoglossus_semilaevis
ENSACLG00000002824	ptcd1	99	69.330	ENSCVAG00000015826	ptcd1	98	69.330	Cyprinodon_variegatus
ENSACLG00000002824	ptcd1	93	69.196	ENSCVAG00000003621	ptcd1	98	69.406	Cyprinodon_variegatus
ENSACLG00000002824	ptcd1	84	52.195	ENSDARG00000076176	ptcd1	88	52.195	Danio_rerio
ENSACLG00000002824	ptcd1	81	49.069	ENSDNOG00000009957	-	85	48.768	Dasypus_novemcinctus
ENSACLG00000002824	ptcd1	80	49.239	ENSDORG00000000740	Ptcd1	86	49.000	Dipodomys_ordii
ENSACLG00000002824	ptcd1	80	40.476	ENSEBUG00000014515	ptcd1	94	40.323	Eptatretus_burgeri
ENSACLG00000002824	ptcd1	80	50.756	ENSEASG00005002480	-	83	51.174	Equus_asinus_asinus
ENSACLG00000002824	ptcd1	80	49.500	ENSECAG00000016617	-	88	46.288	Equus_caballus
ENSACLG00000002824	ptcd1	92	54.688	ENSELUG00000016517	ptcd1	94	54.688	Esox_lucius
ENSACLG00000002824	ptcd1	80	50.085	ENSFCAG00000015069	-	83	50.085	Felis_catus
ENSACLG00000002824	ptcd1	83	46.835	ENSFALG00000013803	-	87	46.445	Ficedula_albicollis
ENSACLG00000002824	ptcd1	80	49.073	ENSFDAG00000006393	-	85	48.684	Fukomys_damarensis
ENSACLG00000002824	ptcd1	78	74.506	ENSFHEG00000012491	ptcd1	97	74.506	Fundulus_heteroclitus
ENSACLG00000002824	ptcd1	87	62.998	ENSGMOG00000007639	ptcd1	99	62.998	Gadus_morhua
ENSACLG00000002824	ptcd1	80	47.769	ENSGALG00000004711	-	83	47.517	Gallus_gallus
ENSACLG00000002824	ptcd1	88	69.874	ENSGAFG00000013175	ptcd1	90	70.541	Gambusia_affinis
ENSACLG00000002824	ptcd1	89	70.781	ENSGACG00000016607	ptcd1	99	70.781	Gasterosteus_aculeatus
ENSACLG00000002824	ptcd1	77	47.359	ENSGAGG00000021832	-	85	46.610	Gopherus_agassizii
ENSACLG00000002824	ptcd1	80	48.311	ENSGGOG00000015123	-	83	48.398	Gorilla_gorilla
ENSACLG00000002824	ptcd1	100	98.164	ENSHBUG00000018275	ptcd1	100	98.164	Haplochromis_burtoni
ENSACLG00000002824	ptcd1	82	47.954	ENSHGLG00000017621	-	88	47.059	Heterocephalus_glaber_female
ENSACLG00000002824	ptcd1	82	47.954	ENSHGLG00100007218	-	88	47.059	Heterocephalus_glaber_male
ENSACLG00000002824	ptcd1	98	57.819	ENSHCOG00000010784	ptcd1	98	58.393	Hippocampus_comes
ENSACLG00000002824	ptcd1	84	49.188	ENSSTOG00000001682	-	86	49.188	Ictidomys_tridecemlineatus
ENSACLG00000002824	ptcd1	83	48.940	ENSJJAG00000000319	Ptcd1	87	49.672	Jaculus_jaculus
ENSACLG00000002824	ptcd1	99	67.280	ENSKMAG00000008708	ptcd1	99	67.280	Kryptolebias_marmoratus
ENSACLG00000002824	ptcd1	99	66.804	ENSLBEG00000008061	ptcd1	99	67.218	Labrus_bergylta
ENSACLG00000002824	ptcd1	80	49.578	ENSLACG00000011172	ptcd1	82	49.578	Latimeria_chalumnae
ENSACLG00000002824	ptcd1	83	51.911	ENSLOCG00000004833	ptcd1	94	51.575	Lepisosteus_oculatus
ENSACLG00000002824	ptcd1	83	48.214	ENSLAFG00000002588	-	86	48.214	Loxodonta_africana
ENSACLG00000002824	ptcd1	80	48.311	ENSMFAG00000041324	-	83	48.398	Macaca_fascicularis
ENSACLG00000002824	ptcd1	80	48.311	ENSMMUG00000030408	-	83	48.398	Macaca_mulatta
ENSACLG00000002824	ptcd1	80	48.480	ENSMNEG00000043786	-	83	48.567	Macaca_nemestrina
ENSACLG00000002824	ptcd1	80	35.788	ENSMLEG00000031179	-	81	37.607	Mandrillus_leucophaeus
ENSACLG00000002824	ptcd1	99	68.296	ENSMAMG00000007623	ptcd1	98	68.296	Mastacembelus_armatus
ENSACLG00000002824	ptcd1	100	99.435	ENSMZEG00005012722	ptcd1	100	99.435	Maylandia_zebra
ENSACLG00000002824	ptcd1	87	45.982	ENSMGAG00000004211	-	86	46.280	Meleagris_gallopavo
ENSACLG00000002824	ptcd1	83	46.341	ENSMICG00000017428	-	87	46.677	Microcebus_murinus
ENSACLG00000002824	ptcd1	99	69.241	ENSMMOG00000020243	ptcd1	99	69.241	Mola_mola
ENSACLG00000002824	ptcd1	84	46.069	ENSMODG00000001350	-	85	46.069	Monodelphis_domestica
ENSACLG00000002824	ptcd1	99	70.874	ENSMALG00000018442	ptcd1	99	70.874	Monopterus_albus
ENSACLG00000002824	ptcd1	85	47.428	MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	Mus_caroli
ENSACLG00000002824	ptcd1	85	48.083	ENSMUSG00000029624	Ptcd1	89	48.562	Mus_musculus
ENSACLG00000002824	ptcd1	84	47.496	MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	Mus_pahari
ENSACLG00000002824	ptcd1	85	47.284	MGP_SPRETEiJ_G0029012	Ptcd1	89	48.243	Mus_spretus
ENSACLG00000002824	ptcd1	85	47.923	ENSMPUG00000016518	-	88	48.403	Mustela_putorius_furo
ENSACLG00000002824	ptcd1	80	50.251	ENSMLUG00000010994	-	83	47.713	Myotis_lucifugus
ENSACLG00000002824	ptcd1	98	93.525	ENSNBRG00000010079	ptcd1	96	96.218	Neolamprologus_brichardi
ENSACLG00000002824	ptcd1	70	47.610	ENSNLEG00000011060	-	87	47.610	Nomascus_leucogenys
ENSACLG00000002824	ptcd1	80	47.288	ENSMEUG00000006930	-	84	47.288	Notamacropus_eugenii
ENSACLG00000002824	ptcd1	70	59.483	ENSOPRG00000013647	-	73	62.069	Ochotona_princeps
ENSACLG00000002824	ptcd1	85	92.154	ENSONIG00000003168	ptcd1	100	92.154	Oreochromis_niloticus
ENSACLG00000002824	ptcd1	76	47.173	ENSOANG00000007728	-	73	47.173	Ornithorhynchus_anatinus
ENSACLG00000002824	ptcd1	85	47.778	ENSOCUG00000010584	-	86	47.785	Oryctolagus_cuniculus
ENSACLG00000002824	ptcd1	96	67.007	ENSORLG00000009275	ptcd1	99	67.007	Oryzias_latipes
ENSACLG00000002824	ptcd1	96	68.228	ENSORLG00020000988	ptcd1	99	68.228	Oryzias_latipes_hni
ENSACLG00000002824	ptcd1	96	68.175	ENSORLG00015010557	ptcd1	99	68.175	Oryzias_latipes_hsok
ENSACLG00000002824	ptcd1	96	68.429	ENSOMEG00000020627	ptcd1	99	68.429	Oryzias_melastigma
ENSACLG00000002824	ptcd1	87	45.597	ENSOGAG00000010877	-	89	45.912	Otolemur_garnettii
ENSACLG00000002824	ptcd1	86	45.234	ENSOARG00000018676	-	88	45.234	Ovis_aries
ENSACLG00000002824	ptcd1	80	47.973	ENSPPAG00000036024	-	83	48.061	Pan_paniscus
ENSACLG00000002824	ptcd1	80	50.592	ENSPPRG00000003478	-	84	50.592	Panthera_pardus
ENSACLG00000002824	ptcd1	84	46.926	ENSPTRG00000019452	-	87	47.011	Pan_troglodytes
ENSACLG00000002824	ptcd1	80	48.480	ENSPANG00000016730	-	83	48.567	Papio_anubis
ENSACLG00000002824	ptcd1	80	51.877	ENSPKIG00000014215	ptcd1	84	52.324	Paramormyrops_kingsleyae
ENSACLG00000002824	ptcd1	80	48.393	ENSPSIG00000011184	-	98	48.562	Pelodiscus_sinensis
ENSACLG00000002824	ptcd1	70	42.967	ENSPMAG00000009667	ptcd1	100	42.967	Petromyzon_marinus
ENSACLG00000002824	ptcd1	84	46.372	ENSPCIG00000024778	-	85	46.372	Phascolarctos_cinereus
ENSACLG00000002824	ptcd1	99	65.223	ENSPFOG00000004458	ptcd1	99	65.223	Poecilia_formosa
ENSACLG00000002824	ptcd1	99	65.498	ENSPLAG00000011051	ptcd1	99	65.638	Poecilia_latipinna
ENSACLG00000002824	ptcd1	99	65.830	ENSPMEG00000020547	ptcd1	99	65.830	Poecilia_mexicana
ENSACLG00000002824	ptcd1	89	69.449	ENSPREG00000000059	ptcd1	90	69.921	Poecilia_reticulata
ENSACLG00000002824	ptcd1	80	47.899	ENSPPYG00000017377	-	88	47.899	Pongo_abelii
ENSACLG00000002824	ptcd1	75	52.667	ENSPCAG00000001852	-	83	52.667	Procavia_capensis
ENSACLG00000002824	ptcd1	82	48.093	ENSPCOG00000018596	-	90	47.132	Propithecus_coquereli
ENSACLG00000002824	ptcd1	51	59.091	ENSPVAG00000007529	-	55	59.091	Pteropus_vampyrus
ENSACLG00000002824	ptcd1	100	97.881	ENSPNYG00000019993	ptcd1	100	97.881	Pundamilia_nyererei
ENSACLG00000002824	ptcd1	81	53.936	ENSPNAG00000014931	ptcd1	89	52.320	Pygocentrus_nattereri
ENSACLG00000002824	ptcd1	87	47.161	ENSRNOG00000000987	Ptcd1	92	47.476	Rattus_norvegicus
ENSACLG00000002824	ptcd1	80	48.567	ENSRBIG00000043393	-	83	49.410	Rhinopithecus_bieti
ENSACLG00000002824	ptcd1	80	48.826	ENSRROG00000036420	-	83	49.664	Rhinopithecus_roxellana
ENSACLG00000002824	ptcd1	80	48.480	ENSSBOG00000024114	-	84	48.567	Saimiri_boliviensis_boliviensis
ENSACLG00000002824	ptcd1	84	45.899	ENSSHAG00000011376	-	88	47.088	Sarcophilus_harrisii
ENSACLG00000002824	ptcd1	84	53.120	ENSSFOG00015007909	ptcd1	83	53.440	Scleropages_formosus
ENSACLG00000002824	ptcd1	87	68.421	ENSSMAG00000000218	ptcd1	99	68.421	Scophthalmus_maximus
ENSACLG00000002824	ptcd1	96	72.006	ENSSDUG00000015671	ptcd1	100	72.006	Seriola_dumerili
ENSACLG00000002824	ptcd1	93	72.904	ENSSLDG00000014261	ptcd1	99	70.528	Seriola_lalandi_dorsalis
ENSACLG00000002824	ptcd1	87	46.494	ENSSPUG00000003540	-	85	46.494	Sphenodon_punctatus
ENSACLG00000002824	ptcd1	100	72.376	ENSSPAG00000011049	ptcd1	100	72.376	Stegastes_partitus
ENSACLG00000002824	ptcd1	86	47.235	ENSSSCG00000007622	-	88	49.746	Sus_scrofa
ENSACLG00000002824	ptcd1	80	47.856	ENSTGUG00000007563	-	95	48.376	Taeniopygia_guttata
ENSACLG00000002824	ptcd1	96	65.951	ENSTRUG00000013471	ptcd1	99	65.187	Takifugu_rubripes
ENSACLG00000002824	ptcd1	95	64.255	ENSTNIG00000008271	ptcd1	99	64.255	Tetraodon_nigroviridis
ENSACLG00000002824	ptcd1	80	48.744	ENSTBEG00000011021	-	84	48.744	Tupaia_belangeri
ENSACLG00000002824	ptcd1	80	48.464	ENSTTRG00000003006	-	83	48.464	Tursiops_truncatus
ENSACLG00000002824	ptcd1	83	49.013	ENSUAMG00000008049	-	86	48.849	Ursus_americanus
ENSACLG00000002824	ptcd1	83	50.000	ENSVVUG00000008836	-	86	50.000	Vulpes_vulpes
ENSACLG00000002824	ptcd1	80	45.960	ENSXETG00000009891	ptcd1	84	45.960	Xenopus_tropicalis
ENSACLG00000002824	ptcd1	89	69.797	ENSXMAG00000015540	ptcd1	90	69.953	Xiphophorus_maculatus