EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000002833 (Gene tree)
Gene ID: 113007098
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein-like
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 14144 bases
Position: chr15:38437864-38452007
Accession: 113007098
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000004218	SMN	PF06003.12	1.3e-34	1	2
ENSACLP00000004218	SMN	PF06003.12	1.3e-34	2	2
ENSACLP00000004189	SMN	PF06003.12	7.5e-31	1	2
ENSACLP00000004189	SMN	PF06003.12	7.5e-31	2	2
ENSACLP00000004207	SMN	PF06003.12	7.5e-31	1	2
ENSACLP00000004207	SMN	PF06003.12	7.5e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000004305	-	2467	-	ENSACLP00000004218	315 (aa)	-	-
ENSACLT00000004277	-	4191	-	ENSACLP00000004189	352 (aa)	XP_025999280	UPI000E40F3C9
ENSACLT00000004295	-	2578	-	ENSACLP00000004207	352 (aa)	XP_025999280	UPI000E40F3C9

Gene Model

Click here to download ENSACLG00000002833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000002833's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000002833	-	75	48.333	ENSACLG00000007308	smn1	84	31.304

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000002833	-	100	60.054	ENSAOCG00000006124	-	99	59.239	Amphiprion_ocellaris
ENSACLG00000002833	-	57	76.364	ENSAPEG00000000852	-	77	76.364	Amphiprion_percula
ENSACLG00000002833	-	100	54.348	ENSATEG00000005614	-	99	54.348	Anabas_testudineus
ENSACLG00000002833	-	100	52.941	ENSMAMG00000016192	-	100	52.778	Mastacembelus_armatus
ENSACLG00000002833	-	100	99.716	ENSMZEG00005003112	-	100	99.716	Maylandia_zebra
ENSACLG00000002833	-	100	53.211	ENSMALG00000020522	-	99	52.744	Monopterus_albus
ENSACLG00000002833	-	77	35.192	ENSPKIG00000003398	-	74	35.069	Paramormyrops_kingsleyae
ENSACLG00000002833	-	53	47.170	ENSPSIG00000012459	-	85	39.394	Pelodiscus_sinensis
ENSACLG00000002833	-	72	46.544	ENSPFOG00000022021	-	89	44.144	Poecilia_formosa
ENSACLG00000002833	-	96	33.524	ENSSFOG00015022042	-	88	38.660	Scleropages_formosus
ENSACLG00000002833	-	100	55.616	ENSSDUG00000020881	-	99	56.098	Seriola_dumerili
ENSACLG00000002833	-	98	55.989	ENSSLDG00000013900	-	95	55.710	Seriola_lalandi_dorsalis