EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000003016 (Gene tree)
Gene ID: 113010976
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 7850 bases
Position: chr18:33080709-33088558
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000004556	RRM_1	PF00076.22	1.7e-30	1	2
ENSACLP00000004556	RRM_1	PF00076.22	1.7e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000004648	-	981	-	ENSACLP00000004556	326 (aa)	-	-

Gene Model

Click here to download ENSACLG00000003016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000003016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000003016	trnau1apb	55	30.769	ENSACLG00000002317	-	68	30.769
ENSACLG00000003016	trnau1apb	98	43.865	ENSACLG00000018515	trnau1apa	98	43.902

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000003016	trnau1apb	100	75.731	ENSAPOG00000010086	trnau1apb	100	76.246	Acanthochromis_polyacanthus
ENSACLG00000003016	trnau1apb	100	94.479	ENSACIG00000001863	trnau1apb	100	94.479	Amphilophus_citrinellus
ENSACLG00000003016	trnau1apb	100	84.257	ENSAOCG00000011891	trnau1apb	100	85.423	Amphiprion_ocellaris
ENSACLG00000003016	trnau1apb	100	82.301	ENSAPEG00000008029	trnau1apb	100	86.136	Amphiprion_percula
ENSACLG00000003016	trnau1apb	100	81.977	ENSATEG00000002196	trnau1apb	100	83.965	Anabas_testudineus
ENSACLG00000003016	trnau1apb	99	64.923	ENSAMXG00000001805	trnau1apb	99	66.769	Astyanax_mexicanus
ENSACLG00000003016	trnau1apb	99	78.779	ENSCSEG00000018215	trnau1apb	100	80.233	Cynoglossus_semilaevis
ENSACLG00000003016	trnau1apb	95	73.273	ENSCVAG00000017866	trnau1apb	100	74.775	Cyprinodon_variegatus
ENSACLG00000003016	trnau1apb	99	65.231	ENSDARG00000056475	trnau1apb	98	67.077	Danio_rerio
ENSACLG00000003016	trnau1apb	100	62.952	ENSELUG00000016683	trnau1apb	99	65.964	Esox_lucius
ENSACLG00000003016	trnau1apb	100	78.000	ENSFHEG00000001267	trnau1apb	100	77.778	Fundulus_heteroclitus
ENSACLG00000003016	trnau1apb	100	72.141	ENSGMOG00000001160	trnau1apb	100	73.021	Gadus_morhua
ENSACLG00000003016	trnau1apb	54	94.350	ENSGAFG00000006770	trnau1apb	100	74.847	Gambusia_affinis
ENSACLG00000003016	trnau1apb	100	80.000	ENSGACG00000014944	trnau1apb	100	80.539	Gasterosteus_aculeatus
ENSACLG00000003016	trnau1apb	70	40.693	ENSGAGG00000022384	-	78	41.558	Gopherus_agassizii
ENSACLG00000003016	trnau1apb	100	90.058	ENSHBUG00000018944	trnau1apb	99	90.058	Haplochromis_burtoni
ENSACLG00000003016	trnau1apb	70	82.969	ENSHCOG00000011350	trnau1apb	75	81.702	Hippocampus_comes
ENSACLG00000003016	trnau1apb	99	61.420	ENSIPUG00000008843	tsp1l	99	66.667	Ictalurus_punctatus
ENSACLG00000003016	trnau1apb	68	90.991	ENSKMAG00000010082	trnau1apb	99	80.290	Kryptolebias_marmoratus
ENSACLG00000003016	trnau1apb	100	81.471	ENSLBEG00000020480	trnau1apb	100	83.186	Labrus_bergylta
ENSACLG00000003016	trnau1apb	100	55.455	ENSLOCG00000013175	trnau1apb	99	55.589	Lepisosteus_oculatus
ENSACLG00000003016	trnau1apb	100	83.090	ENSMAMG00000012192	trnau1apb	100	84.457	Mastacembelus_armatus
ENSACLG00000003016	trnau1apb	100	90.058	ENSMZEG00005014852	trnau1apb	99	90.058	Maylandia_zebra
ENSACLG00000003016	trnau1apb	70	39.394	ENSMGAG00000003234	-	99	40.693	Meleagris_gallopavo
ENSACLG00000003016	trnau1apb	97	70.402	ENSMMOG00000021521	trnau1apb	100	71.965	Mola_mola
ENSACLG00000003016	trnau1apb	99	73.591	ENSMALG00000003772	trnau1apb	100	77.607	Monopterus_albus
ENSACLG00000003016	trnau1apb	97	97.476	ENSNBRG00000000751	trnau1apb	99	97.476	Neolamprologus_brichardi
ENSACLG00000003016	trnau1apb	99	85.449	ENSONIG00000016639	trnau1apb	100	84.259	Oreochromis_niloticus
ENSACLG00000003016	trnau1apb	68	89.286	ENSORLG00000013265	trnau1apb	99	78.098	Oryzias_latipes
ENSACLG00000003016	trnau1apb	100	75.362	ENSORLG00020004464	trnau1apb	99	78.551	Oryzias_latipes_hni
ENSACLG00000003016	trnau1apb	100	75.362	ENSORLG00015021098	trnau1apb	99	78.551	Oryzias_latipes_hsok
ENSACLG00000003016	trnau1apb	68	88.839	ENSOMEG00000016531	trnau1apb	99	78.963	Oryzias_melastigma
ENSACLG00000003016	trnau1apb	56	80.874	ENSPKIG00000007995	trnau1apb	99	61.610	Paramormyrops_kingsleyae
ENSACLG00000003016	trnau1apb	70	43.290	ENSPSIG00000004189	-	78	43.290	Pelodiscus_sinensis
ENSACLG00000003016	trnau1apb	99	66.176	ENSPMGG00000018509	trnau1apb	99	65.698	Periophthalmus_magnuspinnatus
ENSACLG00000003016	trnau1apb	100	81.346	ENSPFOG00000003938	trnau1apb	100	81.346	Poecilia_formosa
ENSACLG00000003016	trnau1apb	100	77.364	ENSPLAG00000015480	trnau1apb	99	77.650	Poecilia_latipinna
ENSACLG00000003016	trnau1apb	100	77.364	ENSPMEG00000012743	trnau1apb	99	77.650	Poecilia_mexicana
ENSACLG00000003016	trnau1apb	100	75.358	ENSPREG00000015035	trnau1apb	99	76.504	Poecilia_reticulata
ENSACLG00000003016	trnau1apb	100	97.239	ENSPNYG00000012127	trnau1apb	100	97.239	Pundamilia_nyererei
ENSACLG00000003016	trnau1apb	99	64.458	ENSPNAG00000019138	trnau1apb	98	62.798	Pygocentrus_nattereri
ENSACLG00000003016	trnau1apb	99	59.760	ENSSFOG00015014158	trnau1apb	99	63.501	Scleropages_formosus
ENSACLG00000003016	trnau1apb	99	78.006	ENSSMAG00000001745	trnau1apb	99	80.000	Scophthalmus_maximus
ENSACLG00000003016	trnau1apb	99	82.216	ENSSDUG00000011109	trnau1apb	99	84.795	Seriola_dumerili
ENSACLG00000003016	trnau1apb	99	82.319	ENSSLDG00000012947	trnau1apb	99	84.884	Seriola_lalandi_dorsalis
ENSACLG00000003016	trnau1apb	69	33.725	ENSSPUG00000016701	-	90	34.050	Sphenodon_punctatus
ENSACLG00000003016	trnau1apb	100	87.273	ENSSPAG00000006917	trnau1apb	100	87.613	Stegastes_partitus
ENSACLG00000003016	trnau1apb	100	76.163	ENSTRUG00000008608	trnau1apb	99	77.326	Takifugu_rubripes
ENSACLG00000003016	trnau1apb	99	72.840	ENSTNIG00000000916	trnau1apb	100	71.385	Tetraodon_nigroviridis
ENSACLG00000003016	trnau1apb	94	69.301	ENSXCOG00000007974	trnau1apb	94	70.213	Xiphophorus_couchianus
ENSACLG00000003016	trnau1apb	100	77.364	ENSXMAG00000029918	trnau1apb	99	78.223	Xiphophorus_maculatus