EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000003395 (Gene tree)
Gene ID: -
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 4
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 6958 bases
Position: chr22:8098095-8105052
Accession: ZDB-GENE-030131-591
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000005427	RRM_1	PF00076.22	2.3e-31	1	2
ENSACLP00000005427	RRM_1	PF00076.22	2.3e-31	2	2
ENSACLP00000005353	RRM_1	PF00076.22	4e-31	1	2
ENSACLP00000005353	RRM_1	PF00076.22	4e-31	2	2
ENSACLP00000005314	RRM_1	PF00076.22	5.7e-31	1	2
ENSACLP00000005314	RRM_1	PF00076.22	5.7e-31	2	2
ENSACLP00000005382	RRM_1	PF00076.22	7.5e-22	1	1
ENSACLP00000005439	RRM_1	PF00076.22	7.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000005466	-	933	-	ENSACLP00000005353	310 (aa)	-	-
ENSACLT00000005545	-	792	-	ENSACLP00000005427	263 (aa)	-	-
ENSACLT00000005556	-	366	-	ENSACLP00000005439	121 (aa)	-	-
ENSACLT00000005426	-	1074	-	ENSACLP00000005314	357 (aa)	-	-
ENSACLT00000005497	-	852	-	ENSACLP00000005382	283 (aa)	-	-

Gene Model

Click here to download ENSACLG00000003395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000003395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000003395	srsf4	68	78.142	ENSACLG00000021269	-	51	76.374
ENSACLG00000003395	srsf4	65	43.182	ENSACLG00000005676	-	66	47.337
ENSACLG00000003395	srsf4	97	36.765	ENSACLG00000021693	-	92	40.580
ENSACLG00000003395	srsf4	60	78.082	ENSACLG00000024373	-	80	78.947
ENSACLG00000003395	srsf4	58	75.714	ENSACLG00000027166	srsf5a	95	54.545
ENSACLG00000003395	srsf4	57	75.362	ENSACLG00000026424	srsf5b	61	66.667
ENSACLG00000003395	srsf4	67	44.624	ENSACLG00000015678	srsf9	74	42.439

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000003395	srsf4	97	68.872	ENSG00000116350	SRSF4	53	87.500	Homo_sapiens
ENSACLG00000003395	srsf4	81	95.588	ENSAPOG00000020244	srsf4	83	77.076	Acanthochromis_polyacanthus
ENSACLG00000003395	srsf4	72	75.862	ENSAPOG00000023399	-	60	74.719	Acanthochromis_polyacanthus
ENSACLG00000003395	srsf4	99	95.817	ENSACIG00000018649	srsf4	100	95.817	Amphilophus_citrinellus
ENSACLG00000003395	srsf4	64	98.701	ENSAOCG00000005997	srsf4	92	90.000	Amphiprion_ocellaris
ENSACLG00000003395	srsf4	68	98.780	ENSAPEG00000020870	-	64	98.780	Amphiprion_percula
ENSACLG00000003395	srsf4	61	77.119	ENSAPEG00000020826	srsf4	69	68.664	Amphiprion_percula
ENSACLG00000003395	srsf4	79	86.475	ENSATEG00000005680	srsf4	77	88.017	Anabas_testudineus
ENSACLG00000003395	srsf4	91	71.631	ENSAMXG00000034811	srsf4	75	90.789	Astyanax_mexicanus
ENSACLG00000003395	srsf4	99	43.706	WBGene00004698	rsp-1	97	52.778	Caenorhabditis_elegans
ENSACLG00000003395	srsf4	79	64.179	ENSCING00000024718	-	56	56.995	Ciona_intestinalis
ENSACLG00000003395	srsf4	64	74.359	ENSCING00000012370	-	68	61.307	Ciona_intestinalis
ENSACLG00000003395	srsf4	61	71.622	ENSCING00000011362	-	65	57.838	Ciona_intestinalis
ENSACLG00000003395	srsf4	67	68.293	ENSCING00000020631	-	80	62.564	Ciona_intestinalis
ENSACLG00000003395	srsf4	69	69.880	ENSCSAVG00000002581	-	70	65.193	Ciona_savignyi
ENSACLG00000003395	srsf4	74	98.876	ENSCSEG00000010058	srsf4	79	95.588	Cynoglossus_semilaevis
ENSACLG00000003395	srsf4	77	60.776	ENSCVAG00000004342	srsf4	75	61.751	Cyprinodon_variegatus
ENSACLG00000003395	srsf4	98	85.915	ENSDARG00000105293	srsf4	72	92.105	Danio_rerio
ENSACLG00000003395	srsf4	67	65.574	FBgn0004587	B52	95	63.281	Drosophila_melanogaster
ENSACLG00000003395	srsf4	77	60.215	ENSEBUG00000001681	srsf4	67	60.894	Eptatretus_burgeri
ENSACLG00000003395	srsf4	60	60.000	ENSEBUG00000003129	srsf4	69	58.599	Eptatretus_burgeri
ENSACLG00000003395	srsf4	73	63.731	ENSEBUG00000005588	srsf4	66	51.172	Eptatretus_burgeri
ENSACLG00000003395	srsf4	97	71.338	ENSELUG00000017551	srsf4	93	81.538	Esox_lucius
ENSACLG00000003395	srsf4	68	97.561	ENSFHEG00000007472	srsf4	88	97.561	Fundulus_heteroclitus
ENSACLG00000003395	srsf4	64	94.872	ENSGMOG00000012906	srsf4	81	68.235	Gadus_morhua
ENSACLG00000003395	srsf4	93	95.588	ENSGAFG00000018496	srsf4	76	94.203	Gambusia_affinis
ENSACLG00000003395	srsf4	64	98.718	ENSGACG00000002389	srsf4	56	92.222	Gasterosteus_aculeatus
ENSACLG00000003395	srsf4	68	78.142	ENSHBUG00000011326	-	88	56.329	Haplochromis_burtoni
ENSACLG00000003395	srsf4	74	100.000	ENSHBUG00000016897	-	98	91.071	Haplochromis_burtoni
ENSACLG00000003395	srsf4	80	94.118	ENSHCOG00000012540	srsf4	78	98.485	Hippocampus_comes
ENSACLG00000003395	srsf4	89	95.588	ENSKMAG00000013631	srsf4	82	79.808	Kryptolebias_marmoratus
ENSACLG00000003395	srsf4	70	98.824	ENSLBEG00000017163	-	79	98.824	Labrus_bergylta
ENSACLG00000003395	srsf4	60	83.562	ENSLOCG00000001442	-	98	50.970	Lepisosteus_oculatus
ENSACLG00000003395	srsf4	77	95.588	ENSMAMG00000004888	srsf4	77	95.588	Mastacembelus_armatus
ENSACLG00000003395	srsf4	74	100.000	ENSMZEG00005025078	-	91	100.000	Maylandia_zebra
ENSACLG00000003395	srsf4	100	100.000	ENSMZEG00005026275	srsf4	100	100.000	Maylandia_zebra
ENSACLG00000003395	srsf4	77	95.588	ENSMMOG00000013653	srsf4	77	95.588	Mola_mola
ENSACLG00000003395	srsf4	86	86.765	ENSMODG00000011052	SRSF4	60	85.507	Monodelphis_domestica
ENSACLG00000003395	srsf4	66	75.000	ENSMALG00000010062	-	81	77.333	Monopterus_albus
ENSACLG00000003395	srsf4	93	94.118	ENSMALG00000013392	srsf4	78	95.588	Monopterus_albus
ENSACLG00000003395	srsf4	74	100.000	ENSNBRG00000014840	-	88	100.000	Neolamprologus_brichardi
ENSACLG00000003395	srsf4	97	53.906	ENSNLEG00000030787	-	62	70.286	Nomascus_leucogenys
ENSACLG00000003395	srsf4	100	89.031	ENSONIG00000013730	srsf4	100	89.031	Oreochromis_niloticus
ENSACLG00000003395	srsf4	50	70.109	ENSORLG00000009430	-	69	75.287	Oryzias_latipes
ENSACLG00000003395	srsf4	69	98.795	ENSORLG00000028783	-	75	98.795	Oryzias_latipes
ENSACLG00000003395	srsf4	90	76.071	ENSORLG00020016052	srsf4	85	84.647	Oryzias_latipes_hni
ENSACLG00000003395	srsf4	89	85.408	ENSORLG00015007566	srsf4	81	95.588	Oryzias_latipes_hsok
ENSACLG00000003395	srsf4	89	95.588	ENSOMEG00000005541	srsf4	84	75.920	Oryzias_melastigma
ENSACLG00000003395	srsf4	69	96.429	ENSPMGG00000013436	srsf4	95	89.147	Periophthalmus_magnuspinnatus
ENSACLG00000003395	srsf4	63	72.368	ENSPMAG00000009397	srsf4	68	69.022	Petromyzon_marinus
ENSACLG00000003395	srsf4	98	95.588	ENSPLAG00000008812	srsf4	91	95.652	Poecilia_latipinna
ENSACLG00000003395	srsf4	71	98.507	ENSPMEG00000023638	srsf4	84	95.652	Poecilia_mexicana
ENSACLG00000003395	srsf4	98	95.588	ENSPREG00000009639	srsf4	84	95.652	Poecilia_reticulata
ENSACLG00000003395	srsf4	100	91.463	ENSPNYG00000003796	srsf4	100	91.463	Pundamilia_nyererei
ENSACLG00000003395	srsf4	90	91.176	ENSPNAG00000023844	srsf4	54	88.571	Pygocentrus_nattereri
ENSACLG00000003395	srsf4	56	83.784	ENSSHAG00000012407	SRSF4	51	81.757	Sarcophilus_harrisii
ENSACLG00000003395	srsf4	72	90.805	ENSSFOG00015020292	srsf4	82	85.586	Scleropages_formosus
ENSACLG00000003395	srsf4	68	98.780	ENSSMAG00000001707	srsf4	76	67.742	Scophthalmus_maximus
ENSACLG00000003395	srsf4	77	95.588	ENSSDUG00000007387	srsf4	81	76.190	Seriola_dumerili
ENSACLG00000003395	srsf4	68	79.006	ENSSLDG00000009745	srsf4	62	79.545	Seriola_lalandi_dorsalis
ENSACLG00000003395	srsf4	69	84.337	ENSSPUG00000019124	-	85	86.842	Sphenodon_punctatus
ENSACLG00000003395	srsf4	90	95.588	ENSSPAG00000014538	srsf4	79	95.588	Stegastes_partitus
ENSACLG00000003395	srsf4	90	94.118	ENSTRUG00000011891	srsf4	80	84.861	Takifugu_rubripes
ENSACLG00000003395	srsf4	63	80.263	ENSXCOG00000003212	-	55	74.468	Xiphophorus_couchianus
ENSACLG00000003395	srsf4	99	95.588	ENSXCOG00000018826	srsf4	89	87.288	Xiphophorus_couchianus
ENSACLG00000003395	srsf4	70	64.634	ENSXMAG00000005545	srsf4	64	73.256	Xiphophorus_maculatus
ENSACLG00000003395	srsf4	68	97.561	ENSXMAG00000021549	-	69	97.561	Xiphophorus_maculatus