EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000003685 (Gene tree)
Gene ID: 113033159
Gene Symbol: -
Alias: -
Full Name: G-rich RNA sequence binding factor 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 5992 bases
Position: chr12:34791283-34797274
Accession: 113033159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000005470	RRM_1	PF00076.22	5.2e-29	1	2
ENSACLP00000005470	RRM_1	PF00076.22	5.2e-29	2	2
ENSACLP00000005485	RRM_1	PF00076.22	3.4e-28	1	2
ENSACLP00000005485	RRM_1	PF00076.22	3.4e-28	2	2
ENSACLP00000005501	RRM_1	PF00076.22	3.4e-28	1	2
ENSACLP00000005501	RRM_1	PF00076.22	3.4e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000005603	-	1644	-	ENSACLP00000005485	409 (aa)	-	-
ENSACLT00000005620	-	1528	-	ENSACLP00000005501	409 (aa)	-	-
ENSACLT00000005586	-	1617	-	ENSACLP00000005470	400 (aa)	XP_026042398	UPI00032A1B21

Gene Model

Click here to download ENSACLG00000003685's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000003685's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000003685	-	78	42.735	ENSACLG00000003313	hnrnph1	93	42.735
ENSACLG00000003685	-	77	51.948	ENSACLG00000008447	hnrnph3	72	51.948

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000003685	-	100	70.864	ENSAPOG00000012487	grsf1	100	70.864	Acanthochromis_polyacanthus
ENSACLG00000003685	-	100	81.000	ENSACIG00000005871	grsf1	100	81.000	Amphilophus_citrinellus
ENSACLG00000003685	-	100	72.772	ENSAOCG00000017462	-	100	72.772	Amphiprion_ocellaris
ENSACLG00000003685	-	100	73.153	ENSAPEG00000007240	-	100	73.153	Amphiprion_percula
ENSACLG00000003685	-	99	67.500	ENSATEG00000007185	grsf1	99	67.500	Anabas_testudineus
ENSACLG00000003685	-	86	50.610	ENSAMXG00000012270	grsf1	99	50.610	Astyanax_mexicanus
ENSACLG00000003685	-	99	57.391	ENSCSEG00000019209	-	99	57.391	Cynoglossus_semilaevis
ENSACLG00000003685	-	99	63.524	ENSCVAG00000004476	grsf1	100	63.524	Cyprinodon_variegatus
ENSACLG00000003685	-	98	47.089	ENSDARG00000053021	grsf1	93	47.089	Danio_rerio
ENSACLG00000003685	-	99	49.756	ENSFHEG00000013358	-	99	50.244	Fundulus_heteroclitus
ENSACLG00000003685	-	77	53.618	ENSGMOG00000014047	grsf1	100	53.618	Gadus_morhua
ENSACLG00000003685	-	99	62.808	ENSGAFG00000004496	grsf1	99	62.808	Gambusia_affinis
ENSACLG00000003685	-	77	63.467	ENSGACG00000014447	grsf1	97	63.467	Gasterosteus_aculeatus
ENSACLG00000003685	-	100	98.500	ENSHBUG00000006284	grsf1	99	98.500	Haplochromis_burtoni
ENSACLG00000003685	-	99	58.809	ENSHCOG00000007715	-	99	58.809	Hippocampus_comes
ENSACLG00000003685	-	85	52.802	ENSIPUG00000010533	grsf1	84	52.802	Ictalurus_punctatus
ENSACLG00000003685	-	99	60.000	ENSKMAG00000004528	grsf1	100	60.000	Kryptolebias_marmoratus
ENSACLG00000003685	-	76	58.000	ENSLBEG00000018100	grsf1	95	57.705	Labrus_bergylta
ENSACLG00000003685	-	99	68.657	ENSMAMG00000002627	grsf1	99	68.657	Mastacembelus_armatus
ENSACLG00000003685	-	100	99.750	ENSMZEG00005020633	-	100	99.750	Maylandia_zebra
ENSACLG00000003685	-	97	64.737	ENSMMOG00000014231	grsf1	100	63.980	Mola_mola
ENSACLG00000003685	-	100	65.942	ENSMALG00000000251	grsf1	100	65.942	Monopterus_albus
ENSACLG00000003685	-	100	96.333	ENSNBRG00000017774	grsf1	99	96.333	Neolamprologus_brichardi
ENSACLG00000003685	-	100	94.000	ENSONIG00000014119	grsf1	100	94.000	Oreochromis_niloticus
ENSACLG00000003685	-	99	63.131	ENSORLG00000030211	grsf1	99	63.131	Oryzias_latipes
ENSACLG00000003685	-	99	61.616	ENSORLG00020014383	grsf1	99	61.616	Oryzias_latipes_hni
ENSACLG00000003685	-	99	62.025	ENSORLG00015006520	grsf1	99	62.532	Oryzias_latipes_hsok
ENSACLG00000003685	-	89	67.416	ENSOMEG00000009181	grsf1	99	64.810	Oryzias_melastigma
ENSACLG00000003685	-	83	55.952	ENSPKIG00000019432	grsf1	79	55.952	Paramormyrops_kingsleyae
ENSACLG00000003685	-	82	65.672	ENSPMGG00000013654	grsf1	92	65.672	Periophthalmus_magnuspinnatus
ENSACLG00000003685	-	99	62.195	ENSPFOG00000006122	grsf1	99	62.621	Poecilia_formosa
ENSACLG00000003685	-	99	63.235	ENSPLAG00000020977	grsf1	99	63.235	Poecilia_latipinna
ENSACLG00000003685	-	99	62.439	ENSPMEG00000012485	grsf1	99	62.864	Poecilia_mexicana
ENSACLG00000003685	-	99	62.683	ENSPREG00000013383	grsf1	99	63.171	Poecilia_reticulata
ENSACLG00000003685	-	100	97.750	ENSPNYG00000005379	grsf1	100	97.750	Pundamilia_nyererei
ENSACLG00000003685	-	82	57.012	ENSPNAG00000014912	grsf1	78	57.012	Pygocentrus_nattereri
ENSACLG00000003685	-	83	47.006	ENSSFOG00015014620	grsf1	83	47.006	Scleropages_formosus
ENSACLG00000003685	-	100	63.720	ENSSMAG00000014181	grsf1	88	63.720	Scophthalmus_maximus
ENSACLG00000003685	-	100	63.235	ENSSDUG00000009397	-	100	69.091	Seriola_dumerili
ENSACLG00000003685	-	100	64.706	ENSSLDG00000025494	grsf1	100	65.057	Seriola_lalandi_dorsalis
ENSACLG00000003685	-	99	66.089	ENSSPAG00000023296	grsf1	99	66.089	Stegastes_partitus
ENSACLG00000003685	-	96	59.432	ENSTRUG00000015354	grsf1	99	59.398	Takifugu_rubripes
ENSACLG00000003685	-	83	62.696	ENSTNIG00000015350	-	100	63.636	Tetraodon_nigroviridis
ENSACLG00000003685	-	99	62.654	ENSXMAG00000029710	grsf1	100	62.654	Xiphophorus_maculatus