EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000003801 (Gene tree)
Gene ID: 113008478
Gene Symbol: -
Alias: zgc:109966
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 49930 bases
Position: chr16:30574227-30624156
Accession: 113008478
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000005636	KH_1	PF00013.29	1.5e-54	1	3
ENSACLP00000005636	KH_1	PF00013.29	1.5e-54	2	3
ENSACLP00000005636	KH_1	PF00013.29	1.5e-54	3	3
ENSACLP00000005675	KH_1	PF00013.29	1.7e-54	1	3
ENSACLP00000005675	KH_1	PF00013.29	1.7e-54	2	3
ENSACLP00000005675	KH_1	PF00013.29	1.7e-54	3	3
ENSACLP00000005669	KH_1	PF00013.29	1.5e-50	1	3
ENSACLP00000005669	KH_1	PF00013.29	1.5e-50	2	3
ENSACLP00000005669	KH_1	PF00013.29	1.5e-50	3	3
ENSACLP00000005636	KH_2	PF07650.17	2.2e-14	1	1
ENSACLP00000005675	KH_2	PF07650.17	2.8e-14	1	1
ENSACLP00000005669	KH_2	PF07650.17	9.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000005791	-	942	-	ENSACLP00000005669	313 (aa)	-	-
ENSACLT00000005758	-	1279	-	ENSACLP00000005636	321 (aa)	XP_026001707	UPI00022B2294
ENSACLT00000005797	-	2318	-	ENSACLP00000005675	327 (aa)	XP_026001702	UPI0003940EFA

Gene Model

Click here to download ENSACLG00000003801's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000003801's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000003801	-	93	36.364	ENSACLG00000015512	igf2bp2a	68	34.532
ENSACLG00000003801	-	96	75.641	ENSACLG00000019285	zgc:110045	72	75.641
ENSACLG00000003801	-	97	80.000	ENSACLG00000018264	PCBP2	97	80.000
ENSACLG00000003801	-	90	40.845	ENSACLG00000003002	nova1	61	40.845
ENSACLG00000003801	-	88	39.062	ENSACLG00000011819	fubp3	70	39.062
ENSACLG00000003801	-	97	35.211	ENSACLG00000000050	igf2bp3	65	35.099
ENSACLG00000003801	-	97	61.404	ENSACLG00000025246	-	74	61.404
ENSACLG00000003801	-	94	30.657	ENSACLG00000003652	igf2bp1	57	30.657
ENSACLG00000003801	-	100	89.489	ENSACLG00000011835	pcbp3	100	89.489
ENSACLG00000003801	-	94	62.918	ENSACLG00000013348	pcbp4	65	62.997
ENSACLG00000003801	-	95	41.176	ENSACLG00000001424	KHSRP	59	41.176
ENSACLG00000003801	-	77	52.857	ENSACLG00000001537	hnrpkl	54	52.857
ENSACLG00000003801	-	77	51.429	ENSACLG00000018220	hnrnpk	55	51.429
ENSACLG00000003801	-	94	30.872	ENSACLG00000007655	-	63	30.769
ENSACLG00000003801	-	78	34.118	ENSACLG00000020487	khsrp	56	39.062
ENSACLG00000003801	-	70	40.741	ENSACLG00000006708	fubp1	57	40.741

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000003801	-	99	95.161	ENSAPOG00000020003	pcbp3	89	95.161	Acanthochromis_polyacanthus
ENSACLG00000003801	-	100	99.388	ENSAPOG00000016582	-	100	99.388	Acanthochromis_polyacanthus
ENSACLG00000003801	-	98	91.291	ENSAMEG00000001697	-	99	87.069	Ailuropoda_melanoleuca
ENSACLG00000003801	-	100	96.000	ENSACIG00000002739	-	100	96.000	Amphilophus_citrinellus
ENSACLG00000003801	-	100	88.000	ENSACIG00000010933	pcbp3	100	88.000	Amphilophus_citrinellus
ENSACLG00000003801	-	97	97.097	ENSAOCG00000008592	-	100	95.268	Amphiprion_ocellaris
ENSACLG00000003801	-	95	94.539	ENSAOCG00000007806	-	100	94.539	Amphiprion_ocellaris
ENSACLG00000003801	-	100	97.196	ENSAPEG00000005209	-	100	97.196	Amphiprion_percula
ENSACLG00000003801	-	100	90.341	ENSAPEG00000008011	pcbp3	100	90.341	Amphiprion_percula
ENSACLG00000003801	-	96	90.154	ENSATEG00000015787	-	100	90.154	Anabas_testudineus
ENSACLG00000003801	-	100	98.418	ENSATEG00000009833	-	100	98.418	Anabas_testudineus
ENSACLG00000003801	-	98	92.683	ENSAPLG00000002975	-	98	92.683	Anas_platyrhynchos
ENSACLG00000003801	-	98	74.932	ENSAPLG00000008951	-	82	74.932	Anas_platyrhynchos
ENSACLG00000003801	-	99	83.284	ENSACAG00000009819	-	99	83.284	Anolis_carolinensis
ENSACLG00000003801	-	98	85.434	ENSACAG00000004607	-	99	85.434	Anolis_carolinensis
ENSACLG00000003801	-	95	96.218	ENSANAG00000030702	-	100	96.218	Aotus_nancymaae
ENSACLG00000003801	-	96	94.702	ENSAMXG00000013588	-	100	94.702	Astyanax_mexicanus
ENSACLG00000003801	-	100	92.000	ENSAMXG00000003440	pcbp3	100	92.000	Astyanax_mexicanus
ENSACLG00000003801	-	95	70.186	ENSAMXG00000001760	zgc:110045	72	70.186	Astyanax_mexicanus
ENSACLG00000003801	-	90	96.507	ENSCAFG00020019472	-	81	96.507	Canis_lupus_dingo
ENSACLG00000003801	-	98	97.134	ENSCSAG00000007440	-	89	97.134	Chlorocebus_sabaeus
ENSACLG00000003801	-	95	97.368	ENSCPBG00000012151	-	99	91.317	Chrysemys_picta_bellii
ENSACLG00000003801	-	99	80.347	ENSCPBG00000000733	-	76	80.347	Chrysemys_picta_bellii
ENSACLG00000003801	-	100	80.531	ENSCSEG00000016984	-	100	80.531	Cynoglossus_semilaevis
ENSACLG00000003801	-	96	95.364	ENSCSEG00000000822	pcbp3	99	95.364	Cynoglossus_semilaevis
ENSACLG00000003801	-	100	90.057	ENSCVAG00000014482	pcbp3	100	90.057	Cyprinodon_variegatus
ENSACLG00000003801	-	100	98.471	ENSCVAG00000005262	-	100	98.471	Cyprinodon_variegatus
ENSACLG00000003801	-	100	92.286	ENSDARG00000054378	pcbp3	100	92.286	Danio_rerio
ENSACLG00000003801	-	98	83.121	ENSETEG00000015988	-	98	83.121	Echinops_telfairi
ENSACLG00000003801	-	92	71.255	ENSEBUG00000005495	pcbp3	74	71.255	Eptatretus_burgeri
ENSACLG00000003801	-	98	81.388	ENSEBUG00000007485	-	92	82.192	Eptatretus_burgeri
ENSACLG00000003801	-	95	74.286	ENSEBUG00000016192	pcbp3	99	74.721	Eptatretus_burgeri
ENSACLG00000003801	-	100	90.368	ENSELUG00000003521	pcbp3	100	90.368	Esox_lucius
ENSACLG00000003801	-	100	98.165	ENSELUG00000001560	-	91	98.165	Esox_lucius
ENSACLG00000003801	-	98	75.204	ENSFALG00000004411	-	77	75.204	Ficedula_albicollis
ENSACLG00000003801	-	98	96.178	ENSFALG00000003949	-	98	96.178	Ficedula_albicollis
ENSACLG00000003801	-	97	96.393	ENSFHEG00000016615	pcbp3	96	96.393	Fundulus_heteroclitus
ENSACLG00000003801	-	100	96.865	ENSFHEG00000006539	-	100	96.865	Fundulus_heteroclitus
ENSACLG00000003801	-	97	80.896	ENSGMOG00000011992	pcbp3	97	80.896	Gadus_morhua
ENSACLG00000003801	-	96	70.695	ENSGMOG00000008611	-	100	70.695	Gadus_morhua
ENSACLG00000003801	-	97	82.143	ENSGALG00000013155	-	99	81.902	Gallus_gallus
ENSACLG00000003801	-	98	83.099	ENSGALG00000004394	-	98	88.587	Gallus_gallus
ENSACLG00000003801	-	100	85.630	ENSGAFG00000011430	pcbp3	99	85.630	Gambusia_affinis
ENSACLG00000003801	-	100	98.777	ENSGAFG00000010274	-	100	98.777	Gambusia_affinis
ENSACLG00000003801	-	100	79.396	ENSGACG00000014955	-	100	79.396	Gasterosteus_aculeatus
ENSACLG00000003801	-	100	91.813	ENSGACG00000002266	-	100	91.813	Gasterosteus_aculeatus
ENSACLG00000003801	-	91	88.764	ENSGAGG00000000271	-	100	88.764	Gopherus_agassizii
ENSACLG00000003801	-	77	89.130	ENSGAGG00000006956	-	76	89.130	Gopherus_agassizii
ENSACLG00000003801	-	97	93.871	ENSHBUG00000010697	pcbp3	98	93.871	Haplochromis_burtoni
ENSACLG00000003801	-	100	100.000	ENSHBUG00000021782	-	100	100.000	Haplochromis_burtoni
ENSACLG00000003801	-	100	93.146	ENSHCOG00000006067	-	100	93.146	Hippocampus_comes
ENSACLG00000003801	-	100	90.313	ENSHCOG00000017868	pcbp3	100	90.313	Hippocampus_comes
ENSACLG00000003801	-	100	97.764	ENSIPUG00000006238	pcbp3	100	97.764	Ictalurus_punctatus
ENSACLG00000003801	-	100	97.859	ENSKMAG00000018530	-	100	97.859	Kryptolebias_marmoratus
ENSACLG00000003801	-	100	90.341	ENSKMAG00000003046	pcbp3	100	90.341	Kryptolebias_marmoratus
ENSACLG00000003801	-	99	94.249	ENSLBEG00000006201	pcbp3	98	94.249	Labrus_bergylta
ENSACLG00000003801	-	100	83.282	ENSLBEG00000006542	-	100	83.282	Labrus_bergylta
ENSACLG00000003801	-	95	83.429	ENSLACG00000010386	pcbp3	77	80.716	Latimeria_chalumnae
ENSACLG00000003801	-	99	75.000	ENSLACG00000010804	zgc:110045	77	75.000	Latimeria_chalumnae
ENSACLG00000003801	-	98	91.617	ENSLOCG00000009369	pcbp3	99	91.617	Lepisosteus_oculatus
ENSACLG00000003801	-	95	83.180	ENSLOCG00000005058	zgc:110045	80	83.486	Lepisosteus_oculatus
ENSACLG00000003801	-	97	96.066	ENSMAMG00000022336	pcbp3	94	96.066	Mastacembelus_armatus
ENSACLG00000003801	-	100	97.152	ENSMAMG00000011620	-	100	97.152	Mastacembelus_armatus
ENSACLG00000003801	-	100	87.714	ENSMZEG00005008993	pcbp3	100	87.714	Maylandia_zebra
ENSACLG00000003801	-	100	90.237	ENSMZEG00005014882	-	100	90.828	Maylandia_zebra
ENSACLG00000003801	-	94	81.159	ENSMGAG00000001883	-	96	81.268	Meleagris_gallopavo
ENSACLG00000003801	-	98	75.204	ENSMGAG00000006794	-	77	75.204	Meleagris_gallopavo
ENSACLG00000003801	-	100	98.403	ENSMMOG00000005216	-	100	98.403	Mola_mola
ENSACLG00000003801	-	97	93.269	ENSMMOG00000000730	pcbp3	88	93.269	Mola_mola
ENSACLG00000003801	-	73	77.103	ENSMODG00000027884	-	93	77.103	Monodelphis_domestica
ENSACLG00000003801	-	100	88.034	ENSMALG00000000691	pcbp3	100	88.034	Monopterus_albus
ENSACLG00000003801	-	98	85.886	ENSMPUG00000001779	-	90	85.886	Mustela_putorius_furo
ENSACLG00000003801	-	100	90.828	ENSNBRG00000016714	-	100	90.828	Neolamprologus_brichardi
ENSACLG00000003801	-	100	87.714	ENSNBRG00000016409	-	100	87.714	Neolamprologus_brichardi
ENSACLG00000003801	-	95	82.849	ENSOPRG00000003431	-	99	82.849	Ochotona_princeps
ENSACLG00000003801	-	97	84.703	ENSONIG00000012122	-	98	84.703	Oreochromis_niloticus
ENSACLG00000003801	-	100	100.000	ENSONIG00000004611	-	100	100.000	Oreochromis_niloticus
ENSACLG00000003801	-	98	96.178	ENSOCUG00000002696	-	89	96.178	Oryctolagus_cuniculus
ENSACLG00000003801	-	97	97.097	ENSORLG00000000059	pcbp3	100	97.097	Oryzias_latipes
ENSACLG00000003801	-	100	98.754	ENSORLG00000022739	-	100	98.754	Oryzias_latipes
ENSACLG00000003801	-	97	97.097	ENSORLG00020012671	pcbp3	97	97.097	Oryzias_latipes_hni
ENSACLG00000003801	-	100	98.442	ENSORLG00020006124	-	100	98.442	Oryzias_latipes_hni
ENSACLG00000003801	-	99	98.160	ENSORLG00015008051	-	99	98.160	Oryzias_latipes_hsok
ENSACLG00000003801	-	97	97.097	ENSORLG00015000429	pcbp3	97	97.097	Oryzias_latipes_hsok
ENSACLG00000003801	-	100	98.131	ENSOMEG00000020162	-	100	98.131	Oryzias_melastigma
ENSACLG00000003801	-	95	94.138	ENSOMEG00000020811	pcbp3	99	94.138	Oryzias_melastigma
ENSACLG00000003801	-	98	83.611	ENSOGAG00000008044	-	99	83.611	Otolemur_garnettii
ENSACLG00000003801	-	100	97.554	ENSPKIG00000019329	pcbp3	100	97.554	Paramormyrops_kingsleyae
ENSACLG00000003801	-	78	87.912	ENSPKIG00000020913	-	82	87.912	Paramormyrops_kingsleyae
ENSACLG00000003801	-	91	80.488	ENSPSIG00000008350	-	72	77.011	Pelodiscus_sinensis
ENSACLG00000003801	-	98	83.384	ENSPSIG00000014970	-	98	83.988	Pelodiscus_sinensis
ENSACLG00000003801	-	100	90.286	ENSPMGG00000022383	pcbp3	100	90.286	Periophthalmus_magnuspinnatus
ENSACLG00000003801	-	98	74.214	ENSPMAG00000004551	pcbp3	91	74.214	Petromyzon_marinus
ENSACLG00000003801	-	78	88.298	ENSPMAG00000004637	-	97	88.298	Petromyzon_marinus
ENSACLG00000003801	-	98	90.208	ENSPCIG00000028092	-	99	90.208	Phascolarctos_cinereus
ENSACLG00000003801	-	100	81.461	ENSPLAG00000011449	pcbp3	100	76.000	Poecilia_latipinna
ENSACLG00000003801	-	99	94.410	ENSPLAG00000004074	-	92	94.410	Poecilia_latipinna
ENSACLG00000003801	-	99	91.045	ENSPMEG00000006653	-	99	91.045	Poecilia_mexicana
ENSACLG00000003801	-	100	89.548	ENSPMEG00000021239	pcbp3	100	89.548	Poecilia_mexicana
ENSACLG00000003801	-	100	98.403	ENSPREG00000020585	-	100	98.403	Poecilia_reticulata
ENSACLG00000003801	-	96	94.737	ENSPREG00000015736	pcbp3	99	94.737	Poecilia_reticulata
ENSACLG00000003801	-	100	100.000	ENSPNYG00000013205	-	100	100.000	Pundamilia_nyererei
ENSACLG00000003801	-	97	94.194	ENSPNYG00000012326	pcbp3	95	94.194	Pundamilia_nyererei
ENSACLG00000003801	-	100	98.442	ENSPNAG00000015104	pcbp3	100	98.442	Pygocentrus_nattereri
ENSACLG00000003801	-	96	95.333	ENSPNAG00000008541	-	98	95.333	Pygocentrus_nattereri
ENSACLG00000003801	-	98	96.815	ENSRNOG00000001245	Pcbp3	98	96.815	Rattus_norvegicus
ENSACLG00000003801	-	98	85.583	ENSRBIG00000028177	-	90	85.583	Rhinopithecus_bieti
ENSACLG00000003801	-	98	90.719	ENSSHAG00000007890	-	99	90.719	Sarcophilus_harrisii
ENSACLG00000003801	-	100	98.165	ENSSFOG00015010205	pcbp3	100	98.165	Scleropages_formosus
ENSACLG00000003801	-	100	89.429	ENSSFOG00015014706	pcbp3	100	89.429	Scleropages_formosus
ENSACLG00000003801	-	97	83.654	ENSSFOG00015007118	-	95	83.654	Scleropages_formosus
ENSACLG00000003801	-	96	97.020	ENSSMAG00000011929	pcbp3	97	97.020	Scophthalmus_maximus
ENSACLG00000003801	-	100	98.471	ENSSMAG00000003135	-	100	98.471	Scophthalmus_maximus
ENSACLG00000003801	-	96	89.297	ENSSDUG00000011608	pcbp3	99	89.297	Seriola_dumerili
ENSACLG00000003801	-	100	93.030	ENSSDUG00000008502	-	100	93.030	Seriola_dumerili
ENSACLG00000003801	-	96	89.297	ENSSLDG00000008518	pcbp3	99	89.297	Seriola_lalandi_dorsalis
ENSACLG00000003801	-	100	99.388	ENSSLDG00000020161	-	100	99.388	Seriola_lalandi_dorsalis
ENSACLG00000003801	-	92	80.756	ENSSPUG00000013214	-	88	85.340	Sphenodon_punctatus
ENSACLG00000003801	-	100	78.286	ENSSPAG00000023341	-	100	78.286	Stegastes_partitus
ENSACLG00000003801	-	95	94.881	ENSSPAG00000004190	-	100	94.881	Stegastes_partitus
ENSACLG00000003801	-	98	87.725	ENSTGUG00000003316	-	99	87.725	Taeniopygia_guttata
ENSACLG00000003801	-	98	89.490	ENSTGUG00000008158	-	99	89.490	Taeniopygia_guttata
ENSACLG00000003801	-	95	98.958	ENSTRUG00000006280	-	99	92.628	Takifugu_rubripes
ENSACLG00000003801	-	100	91.765	ENSTRUG00000013604	pcbp3	100	91.765	Takifugu_rubripes
ENSACLG00000003801	-	98	84.034	ENSTTRG00000015075	-	99	84.034	Tursiops_truncatus
ENSACLG00000003801	-	93	73.938	ENSXETG00000010491	pcbp2	77	73.938	Xenopus_tropicalis
ENSACLG00000003801	-	98	89.222	ENSXETG00000011483	pcbp1	99	89.222	Xenopus_tropicalis
ENSACLG00000003801	-	100	89.548	ENSXCOG00000020481	pcbp3	100	89.548	Xiphophorus_couchianus
ENSACLG00000003801	-	100	99.083	ENSXMAG00000028711	-	100	99.083	Xiphophorus_maculatus
ENSACLG00000003801	-	100	90.341	ENSXMAG00000008175	pcbp3	100	90.341	Xiphophorus_maculatus