EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000004806 (Gene tree)
Gene ID: 113010172
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 21637 bases
Position: chr18:34739377-34761013
Accession: 113010172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000007127	XRN_N	PF03159.18	1.4e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000007288	-	5122	-	ENSACLP00000007127	1706 (aa)	XP_026004893	UPI000E42C8CF

Gene Model

Click here to download ENSACLG00000004806's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000004806's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000004806	xrn1	99	60.307	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSACLG00000004806	xrn1	97	87.332	ENSAPOG00000000622	xrn1	96	85.714	Acanthochromis_polyacanthus
ENSACLG00000004806	xrn1	96	61.503	ENSAMEG00000012538	XRN1	100	60.222	Ailuropoda_melanoleuca
ENSACLG00000004806	xrn1	95	93.694	ENSACIG00000001057	xrn1	99	93.694	Amphilophus_citrinellus
ENSACLG00000004806	xrn1	99	84.070	ENSAOCG00000014097	xrn1	100	84.128	Amphiprion_ocellaris
ENSACLG00000004806	xrn1	99	86.221	ENSAPEG00000006620	xrn1	100	86.337	Amphiprion_percula
ENSACLG00000004806	xrn1	98	85.379	ENSATEG00000009752	xrn1	99	85.536	Anabas_testudineus
ENSACLG00000004806	xrn1	98	61.054	ENSAPLG00000004905	XRN1	100	60.688	Anas_platyrhynchos
ENSACLG00000004806	xrn1	99	59.603	ENSACAG00000004985	XRN1	100	59.468	Anolis_carolinensis
ENSACLG00000004806	xrn1	99	60.633	ENSANAG00000029013	XRN1	99	73.504	Aotus_nancymaae
ENSACLG00000004806	xrn1	99	68.235	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSACLG00000004806	xrn1	99	60.508	ENSBTAG00000011524	XRN1	100	60.090	Bos_taurus
ENSACLG00000004806	xrn1	70	37.834	WBGene00012730	xrn-1	80	37.757	Caenorhabditis_elegans
ENSACLG00000004806	xrn1	99	60.372	ENSCJAG00000001872	XRN1	100	60.680	Callithrix_jacchus
ENSACLG00000004806	xrn1	95	62.208	ENSCAFG00000007783	XRN1	100	60.596	Canis_familiaris
ENSACLG00000004806	xrn1	95	62.208	ENSCAFG00020009120	XRN1	99	75.472	Canis_lupus_dingo
ENSACLG00000004806	xrn1	99	60.269	ENSCHIG00000019192	XRN1	99	59.532	Capra_hircus
ENSACLG00000004806	xrn1	99	60.822	ENSTSYG00000002705	XRN1	100	60.743	Carlito_syrichta
ENSACLG00000004806	xrn1	50	84.186	ENSCAPG00000004604	-	94	84.186	Cavia_aperea
ENSACLG00000004806	xrn1	99	60.351	ENSCCAG00000034800	XRN1	99	77.179	Cebus_capucinus
ENSACLG00000004806	xrn1	96	62.218	ENSCATG00000041794	XRN1	100	60.661	Cercocebus_atys
ENSACLG00000004806	xrn1	99	61.355	ENSCLAG00000001451	XRN1	99	77.021	Chinchilla_lanigera
ENSACLG00000004806	xrn1	96	61.683	ENSCSAG00000011265	XRN1	100	60.158	Chlorocebus_sabaeus
ENSACLG00000004806	xrn1	53	93.506	ENSCHOG00000013961	-	51	93.506	Choloepus_hoffmanni
ENSACLG00000004806	xrn1	69	51.295	ENSCSAVG00000008584	-	93	51.096	Ciona_savignyi
ENSACLG00000004806	xrn1	96	62.136	ENSCANG00000037495	XRN1	99	77.179	Colobus_angolensis_palliatus
ENSACLG00000004806	xrn1	95	61.885	ENSCGRG00001019411	Xrn1	99	77.179	Cricetulus_griseus_chok1gshd
ENSACLG00000004806	xrn1	95	61.885	ENSCGRG00000012464	Xrn1	99	77.179	Cricetulus_griseus_crigri
ENSACLG00000004806	xrn1	99	71.182	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSACLG00000004806	xrn1	66	85.247	ENSCVAG00000013089	xrn1	99	85.689	Cyprinodon_variegatus
ENSACLG00000004806	xrn1	99	71.338	ENSDARG00000091652	xrn1	98	81.435	Danio_rerio
ENSACLG00000004806	xrn1	97	61.131	ENSDORG00000013833	Xrn1	100	60.102	Dipodomys_ordii
ENSACLG00000004806	xrn1	75	38.918	FBgn0020261	pcm	78	38.918	Drosophila_melanogaster
ENSACLG00000004806	xrn1	86	71.171	ENSETEG00000003978	XRN1	88	71.074	Echinops_telfairi
ENSACLG00000004806	xrn1	89	72.920	ENSEASG00005002687	XRN1	99	77.532	Equus_asinus_asinus
ENSACLG00000004806	xrn1	95	62.277	ENSECAG00000008301	XRN1	100	60.226	Equus_caballus
ENSACLG00000004806	xrn1	92	65.336	ENSEEUG00000011323	XRN1	85	65.336	Erinaceus_europaeus
ENSACLG00000004806	xrn1	99	72.002	ENSELUG00000000169	xrn1	100	72.362	Esox_lucius
ENSACLG00000004806	xrn1	96	58.970	ENSFCAG00000027589	XRN1	99	79.130	Felis_catus
ENSACLG00000004806	xrn1	99	60.908	ENSFALG00000007021	XRN1	100	60.886	Ficedula_albicollis
ENSACLG00000004806	xrn1	99	60.147	ENSFDAG00000020494	XRN1	99	76.862	Fukomys_damarensis
ENSACLG00000004806	xrn1	90	74.138	ENSGMOG00000006396	xrn1	88	74.795	Gadus_morhua
ENSACLG00000004806	xrn1	99	61.521	ENSGALG00000002706	XRN1	100	61.333	Gallus_gallus
ENSACLG00000004806	xrn1	99	77.257	ENSGACG00000014328	xrn1	100	77.201	Gasterosteus_aculeatus
ENSACLG00000004806	xrn1	94	62.500	ENSGAGG00000017535	XRN1	99	62.500	Gopherus_agassizii
ENSACLG00000004806	xrn1	99	60.534	ENSGGOG00000008047	XRN1	100	60.490	Gorilla_gorilla
ENSACLG00000004806	xrn1	100	94.903	ENSHBUG00000005908	xrn1	100	94.903	Haplochromis_burtoni
ENSACLG00000004806	xrn1	99	61.177	ENSHGLG00000014476	XRN1	99	76.862	Heterocephalus_glaber_female
ENSACLG00000004806	xrn1	99	61.177	ENSHGLG00100015130	XRN1	99	76.862	Heterocephalus_glaber_male
ENSACLG00000004806	xrn1	94	83.755	ENSHCOG00000014062	xrn1	99	83.755	Hippocampus_comes
ENSACLG00000004806	xrn1	99	68.500	ENSIPUG00000015229	xrn1	100	68.754	Ictalurus_punctatus
ENSACLG00000004806	xrn1	97	60.932	ENSSTOG00000013552	XRN1	99	76.862	Ictidomys_tridecemlineatus
ENSACLG00000004806	xrn1	98	59.689	ENSJJAG00000010863	Xrn1	99	76.403	Jaculus_jaculus
ENSACLG00000004806	xrn1	99	77.121	ENSKMAG00000021356	xrn1	95	84.277	Kryptolebias_marmoratus
ENSACLG00000004806	xrn1	99	78.366	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSACLG00000004806	xrn1	99	60.303	ENSLACG00000009020	XRN1	99	60.382	Latimeria_chalumnae
ENSACLG00000004806	xrn1	99	66.085	ENSLOCG00000007944	xrn1	100	66.460	Lepisosteus_oculatus
ENSACLG00000004806	xrn1	62	73.679	ENSLAFG00000015426	XRN1	99	73.364	Loxodonta_africana
ENSACLG00000004806	xrn1	96	62.159	ENSMFAG00000032599	XRN1	100	60.604	Macaca_fascicularis
ENSACLG00000004806	xrn1	96	62.159	ENSMMUG00000014038	XRN1	100	60.604	Macaca_mulatta
ENSACLG00000004806	xrn1	96	62.173	ENSMNEG00000034217	XRN1	100	60.433	Macaca_nemestrina
ENSACLG00000004806	xrn1	95	87.706	ENSMAMG00000013219	xrn1	99	87.784	Mastacembelus_armatus
ENSACLG00000004806	xrn1	100	99.707	ENSMZEG00005015099	xrn1	100	99.707	Maylandia_zebra
ENSACLG00000004806	xrn1	99	59.774	ENSMGAG00000006333	XRN1	100	59.525	Meleagris_gallopavo
ENSACLG00000004806	xrn1	99	60.625	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSACLG00000004806	xrn1	57	77.690	ENSMOCG00000008665	Xrn1	99	77.338	Microtus_ochrogaster
ENSACLG00000004806	xrn1	99	59.596	ENSMODG00000021236	XRN1	100	60.158	Monodelphis_domestica
ENSACLG00000004806	xrn1	99	77.655	ENSMALG00000004098	xrn1	100	78.003	Monopterus_albus
ENSACLG00000004806	xrn1	96	77.358	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSACLG00000004806	xrn1	99	60.089	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSACLG00000004806	xrn1	99	60.860	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSACLG00000004806	xrn1	99	60.089	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSACLG00000004806	xrn1	95	62.249	ENSMPUG00000012040	XRN1	100	60.540	Mustela_putorius_furo
ENSACLG00000004806	xrn1	99	59.933	ENSMLUG00000016885	XRN1	100	59.800	Myotis_lucifugus
ENSACLG00000004806	xrn1	57	72.266	ENSNGAG00000023964	Xrn1	99	73.217	Nannospalax_galili
ENSACLG00000004806	xrn1	96	62.100	ENSNLEG00000004726	XRN1	100	60.604	Nomascus_leucogenys
ENSACLG00000004806	xrn1	65	95.876	ENSMEUG00000014473	-	66	96.117	Notamacropus_eugenii
ENSACLG00000004806	xrn1	71	66.423	ENSOPRG00000007337	-	73	67.197	Ochotona_princeps
ENSACLG00000004806	xrn1	99	93.033	ENSONIG00000016673	xrn1	99	97.407	Oreochromis_niloticus
ENSACLG00000004806	xrn1	92	57.766	ENSOANG00000006735	XRN1	99	57.626	Ornithorhynchus_anatinus
ENSACLG00000004806	xrn1	99	59.934	ENSOCUG00000001861	XRN1	100	59.790	Oryctolagus_cuniculus
ENSACLG00000004806	xrn1	100	82.593	ENSORLG00000013005	xrn1	98	82.593	Oryzias_latipes
ENSACLG00000004806	xrn1	99	82.350	ENSORLG00020005559	xrn1	100	82.350	Oryzias_latipes_hni
ENSACLG00000004806	xrn1	99	81.823	ENSORLG00015022523	xrn1	100	81.823	Oryzias_latipes_hsok
ENSACLG00000004806	xrn1	94	88.033	ENSOMEG00000015397	xrn1	99	88.033	Oryzias_melastigma
ENSACLG00000004806	xrn1	97	59.627	ENSOGAG00000000170	XRN1	100	58.890	Otolemur_garnettii
ENSACLG00000004806	xrn1	99	60.577	ENSOARG00000006343	XRN1	99	60.102	Ovis_aries
ENSACLG00000004806	xrn1	99	60.611	ENSPPAG00000010180	XRN1	100	60.498	Pan_paniscus
ENSACLG00000004806	xrn1	97	62.097	ENSPPRG00000007125	XRN1	100	61.158	Panthera_pardus
ENSACLG00000004806	xrn1	96	62.559	ENSPTIG00000021081	XRN1	100	61.158	Panthera_tigris_altaica
ENSACLG00000004806	xrn1	99	60.611	ENSPTRG00000015482	XRN1	100	60.498	Pan_troglodytes
ENSACLG00000004806	xrn1	99	60.761	ENSPANG00000010638	XRN1	100	60.661	Papio_anubis
ENSACLG00000004806	xrn1	99	60.310	ENSPSIG00000018050	XRN1	100	60.288	Pelodiscus_sinensis
ENSACLG00000004806	xrn1	57	85.692	ENSPMGG00000002648	xrn1	99	86.446	Periophthalmus_magnuspinnatus
ENSACLG00000004806	xrn1	57	77.848	ENSPEMG00000020610	Xrn1	99	77.496	Peromyscus_maniculatus_bairdii
ENSACLG00000004806	xrn1	65	51.304	ENSPMAG00000002975	xrn1	99	49.285	Petromyzon_marinus
ENSACLG00000004806	xrn1	90	73.234	ENSPCIG00000028735	XRN1	99	77.813	Phascolarctos_cinereus
ENSACLG00000004806	xrn1	90	84.391	ENSPFOG00000013932	xrn1	99	84.650	Poecilia_formosa
ENSACLG00000004806	xrn1	90	84.805	ENSPLAG00000021653	xrn1	99	84.935	Poecilia_latipinna
ENSACLG00000004806	xrn1	88	84.993	ENSPMEG00000003076	xrn1	95	85.193	Poecilia_mexicana
ENSACLG00000004806	xrn1	99	82.305	ENSPREG00000021147	xrn1	100	82.616	Poecilia_reticulata
ENSACLG00000004806	xrn1	99	60.259	ENSPPYG00000014172	XRN1	100	60.158	Pongo_abelii
ENSACLG00000004806	xrn1	87	59.247	ENSPCAG00000005638	XRN1	96	59.524	Procavia_capensis
ENSACLG00000004806	xrn1	97	61.882	ENSPCOG00000013089	XRN1	99	76.704	Propithecus_coquereli
ENSACLG00000004806	xrn1	86	70.319	ENSPVAG00000016265	XRN1	91	70.319	Pteropus_vampyrus
ENSACLG00000004806	xrn1	100	96.835	ENSPNYG00000010570	xrn1	100	96.835	Pundamilia_nyererei
ENSACLG00000004806	xrn1	99	68.910	ENSPNAG00000023531	xrn1	100	68.852	Pygocentrus_nattereri
ENSACLG00000004806	xrn1	99	60.034	ENSRNOG00000042951	Xrn1	100	59.989	Rattus_norvegicus
ENSACLG00000004806	xrn1	96	61.780	ENSRBIG00000041227	XRN1	100	60.240	Rhinopithecus_bieti
ENSACLG00000004806	xrn1	70	33.153	YGL173C	XRN1	74	52.717	Saccharomyces_cerevisiae
ENSACLG00000004806	xrn1	99	60.294	ENSSBOG00000029561	XRN1	100	60.510	Saimiri_boliviensis_boliviensis
ENSACLG00000004806	xrn1	98	59.226	ENSSHAG00000016207	XRN1	100	59.304	Sarcophilus_harrisii
ENSACLG00000004806	xrn1	99	66.822	ENSSFOG00015024211	xrn1	100	66.822	Scleropages_formosus
ENSACLG00000004806	xrn1	99	82.201	ENSSMAG00000016534	xrn1	99	85.870	Scophthalmus_maximus
ENSACLG00000004806	xrn1	89	90.410	ENSSDUG00000010306	xrn1	97	90.410	Seriola_dumerili
ENSACLG00000004806	xrn1	98	88.732	ENSSLDG00000021543	xrn1	99	88.732	Seriola_lalandi_dorsalis
ENSACLG00000004806	xrn1	61	67.078	ENSSARG00000007741	-	75	67.078	Sorex_araneus
ENSACLG00000004806	xrn1	99	60.777	ENSTGUG00000008498	XRN1	100	60.835	Taeniopygia_guttata
ENSACLG00000004806	xrn1	99	72.157	ENSTRUG00000004895	xrn1	96	84.222	Takifugu_rubripes
ENSACLG00000004806	xrn1	99	71.870	ENSTNIG00000017615	xrn1	100	72.408	Tetraodon_nigroviridis
ENSACLG00000004806	xrn1	81	83.602	ENSTBEG00000003256	XRN1	88	71.086	Tupaia_belangeri
ENSACLG00000004806	xrn1	99	57.328	ENSTTRG00000012914	XRN1	100	57.022	Tursiops_truncatus
ENSACLG00000004806	xrn1	96	60.468	ENSUAMG00000001608	XRN1	99	73.618	Ursus_americanus
ENSACLG00000004806	xrn1	96	61.583	ENSUMAG00000013625	XRN1	100	60.112	Ursus_maritimus
ENSACLG00000004806	xrn1	99	58.432	ENSVPAG00000004690	XRN1	100	58.512	Vicugna_pacos
ENSACLG00000004806	xrn1	96	62.272	ENSVVUG00000024461	XRN1	99	77.883	Vulpes_vulpes
ENSACLG00000004806	xrn1	99	60.511	ENSXETG00000000619	xrn1	99	84.777	Xenopus_tropicalis
ENSACLG00000004806	xrn1	94	86.230	ENSXCOG00000007917	xrn1	96	86.721	Xiphophorus_couchianus
ENSACLG00000004806	xrn1	91	86.066	ENSXMAG00000018320	xrn1	98	86.148	Xiphophorus_maculatus