EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000004988 (Gene tree)
Gene ID: 113031400
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 9566 bases
Position: chr11:1819557-1829122
Accession: 113031400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000007363	RRM_1	PF00076.22	7.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000007528	-	4196	-	ENSACLP00000007363	402 (aa)	XP_026039231	UPI00032A0A3C

Gene Model

Click here to download ENSACLG00000004988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000004988's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000004988	rbm42	100	87.224	ENSAPOG00000015109	rbm42	100	86.946	Acanthochromis_polyacanthus
ENSACLG00000004988	rbm42	100	87.407	ENSACIG00000010771	rbm42	100	87.407	Amphilophus_citrinellus
ENSACLG00000004988	rbm42	100	87.224	ENSAOCG00000008873	rbm42	100	86.946	Amphiprion_ocellaris
ENSACLG00000004988	rbm42	100	87.224	ENSAPEG00000012051	rbm42	99	86.946	Amphiprion_percula
ENSACLG00000004988	rbm42	100	86.453	ENSATEG00000000536	rbm42	100	86.453	Anabas_testudineus
ENSACLG00000004988	rbm42	100	74.458	ENSAMXG00000016545	rbm42	100	74.940	Astyanax_mexicanus
ENSACLG00000004988	rbm42	97	81.156	ENSCSEG00000010248	rbm42	100	81.407	Cynoglossus_semilaevis
ENSACLG00000004988	rbm42	100	80.732	ENSCVAG00000015589	rbm42	100	81.463	Cyprinodon_variegatus
ENSACLG00000004988	rbm42	100	71.046	ENSDARG00000039910	rbm42	100	72.573	Danio_rerio
ENSACLG00000004988	rbm42	100	72.300	ENSELUG00000022403	rbm42	100	71.631	Esox_lucius
ENSACLG00000004988	rbm42	65	78.388	ENSFHEG00000006764	rbm42	91	80.220	Fundulus_heteroclitus
ENSACLG00000004988	rbm42	100	72.263	ENSGMOG00000012660	rbm42	100	71.776	Gadus_morhua
ENSACLG00000004988	rbm42	76	81.290	ENSGAFG00000009059	rbm42	99	80.906	Gambusia_affinis
ENSACLG00000004988	rbm42	100	82.963	ENSGACG00000004170	rbm42	100	82.469	Gasterosteus_aculeatus
ENSACLG00000004988	rbm42	100	99.751	ENSHBUG00000011141	rbm42	100	99.751	Haplochromis_burtoni
ENSACLG00000004988	rbm42	100	81.773	ENSHCOG00000021214	rbm42	100	80.392	Hippocampus_comes
ENSACLG00000004988	rbm42	100	73.141	ENSIPUG00000022365	rbm42	99	73.381	Ictalurus_punctatus
ENSACLG00000004988	rbm42	91	79.784	ENSKMAG00000015287	rbm42	99	79.784	Kryptolebias_marmoratus
ENSACLG00000004988	rbm42	100	81.373	ENSLBEG00000017547	rbm42	100	83.088	Labrus_bergylta
ENSACLG00000004988	rbm42	84	81.159	ENSLBEG00000004578	-	96	82.471	Labrus_bergylta
ENSACLG00000004988	rbm42	100	67.773	ENSLOCG00000003368	rbm42	100	68.720	Lepisosteus_oculatus
ENSACLG00000004988	rbm42	100	86.453	ENSMAMG00000006708	rbm42	100	86.453	Mastacembelus_armatus
ENSACLG00000004988	rbm42	100	100.000	ENSMZEG00005025234	rbm42	100	100.000	Maylandia_zebra
ENSACLG00000004988	rbm42	91	86.721	ENSMALG00000015720	rbm42	100	86.721	Monopterus_albus
ENSACLG00000004988	rbm42	100	96.569	ENSONIG00000008029	rbm42	100	96.569	Oreochromis_niloticus
ENSACLG00000004988	rbm42	100	63.942	ENSORLG00020022507	rbm42	100	63.702	Oryzias_latipes_hni
ENSACLG00000004988	rbm42	100	82.716	ENSORLG00015000659	rbm42	100	82.716	Oryzias_latipes_hsok
ENSACLG00000004988	rbm42	60	84.647	ENSOMEG00000014332	rbm42	99	80.228	Oryzias_melastigma
ENSACLG00000004988	rbm42	100	73.861	ENSPKIG00000015165	rbm42	100	72.947	Paramormyrops_kingsleyae
ENSACLG00000004988	rbm42	93	67.647	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSACLG00000004988	rbm42	54	55.605	ENSPMAG00000008633	rbm42	100	49.593	Petromyzon_marinus
ENSACLG00000004988	rbm42	100	80.882	ENSPFOG00000007701	rbm42	100	80.732	Poecilia_formosa
ENSACLG00000004988	rbm42	100	80.637	ENSPLAG00000009405	rbm42	100	80.488	Poecilia_latipinna
ENSACLG00000004988	rbm42	100	80.637	ENSPMEG00000010375	rbm42	100	80.488	Poecilia_mexicana
ENSACLG00000004988	rbm42	100	81.127	ENSPREG00000018102	rbm42	100	80.976	Poecilia_reticulata
ENSACLG00000004988	rbm42	100	99.751	ENSPNYG00000014460	rbm42	100	99.751	Pundamilia_nyererei
ENSACLG00000004988	rbm42	100	72.619	ENSPNAG00000009961	rbm42	100	73.445	Pygocentrus_nattereri
ENSACLG00000004988	rbm42	100	70.423	ENSSFOG00015019227	rbm42	100	71.259	Scleropages_formosus
ENSACLG00000004988	rbm42	100	84.521	ENSSMAG00000011935	rbm42	100	84.767	Scophthalmus_maximus
ENSACLG00000004988	rbm42	100	88.916	ENSSDUG00000004033	rbm42	100	88.916	Seriola_dumerili
ENSACLG00000004988	rbm42	100	79.353	ENSSLDG00000009918	rbm42	100	96.471	Seriola_lalandi_dorsalis
ENSACLG00000004988	rbm42	100	87.961	ENSSPAG00000019871	rbm42	100	87.685	Stegastes_partitus
ENSACLG00000004988	rbm42	100	79.064	ENSTRUG00000024586	-	76	77.778	Takifugu_rubripes
ENSACLG00000004988	rbm42	99	66.364	ENSTNIG00000011669	rbm42	100	68.707	Tetraodon_nigroviridis
ENSACLG00000004988	rbm42	100	55.405	ENSXETG00000017599	rbm42	100	58.879	Xenopus_tropicalis
ENSACLG00000004988	rbm42	100	81.127	ENSXMAG00000012827	rbm42	100	80.976	Xiphophorus_maculatus