EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000005288 (Gene tree)
Gene ID: 113030341
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 27221 bases
Position: chr10:18242201-18269421
Accession: 113030341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000007768	EST1	PF10374.9	9.5e-13	1	1
ENSACLP00000007791	EST1	PF10374.9	1e-12	1	1
ENSACLP00000007816	EST1	PF10374.9	1e-12	1	1
ENSACLP00000007768	EST1_DNA_bind	PF10373.9	4.7e-54	1	1
ENSACLP00000007791	EST1_DNA_bind	PF10373.9	5.2e-54	1	1
ENSACLP00000007816	EST1_DNA_bind	PF10373.9	5.5e-54	1	1
ENSACLP00000007768	PIN_4	PF13638.6	4.8e-21	1	1
ENSACLP00000007816	PIN_4	PF13638.6	5.3e-21	1	1
ENSACLP00000007791	PIN_4	PF13638.6	2.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000007996	-	7820	-	ENSACLP00000007816	1648 (aa)	XP_026037498	UPI000E4020EF
ENSACLT00000007970	-	7939	-	ENSACLP00000007791	1607 (aa)	-	-
ENSACLT00000007947	-	7787	-	ENSACLP00000007768	1527 (aa)	-	-

Gene Model

Click here to download ENSACLG00000005288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000005288's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000005288	smg6	80	55.113	ENSG00000070366	SMG6	100	58.640	Homo_sapiens
ENSACLG00000005288	smg6	100	80.658	ENSAPOG00000019448	smg6	100	80.514	Acanthochromis_polyacanthus
ENSACLG00000005288	smg6	80	55.389	ENSAMEG00000007632	SMG6	71	59.355	Ailuropoda_melanoleuca
ENSACLG00000005288	smg6	100	85.566	ENSACIG00000012997	smg6	100	85.176	Amphilophus_citrinellus
ENSACLG00000005288	smg6	100	81.367	ENSAOCG00000002630	smg6	100	81.112	Amphiprion_ocellaris
ENSACLG00000005288	smg6	100	81.302	ENSAPEG00000019101	smg6	100	81.052	Amphiprion_percula
ENSACLG00000005288	smg6	100	76.463	ENSATEG00000006483	smg6	100	75.194	Anabas_testudineus
ENSACLG00000005288	smg6	67	49.098	ENSACAG00000011783	SMG6	72	52.954	Anolis_carolinensis
ENSACLG00000005288	smg6	80	55.183	ENSANAG00000035760	SMG6	71	59.447	Aotus_nancymaae
ENSACLG00000005288	smg6	77	65.740	ENSAMXG00000017326	smg6	93	67.891	Astyanax_mexicanus
ENSACLG00000005288	smg6	82	54.726	ENSBTAG00000000267	SMG6	72	59.447	Bos_taurus
ENSACLG00000005288	smg6	80	55.199	ENSCJAG00000001820	SMG6	71	59.447	Callithrix_jacchus
ENSACLG00000005288	smg6	80	55.738	ENSCAFG00000019260	SMG6	72	59.631	Canis_familiaris
ENSACLG00000005288	smg6	80	55.738	ENSCAFG00020009770	SMG6	72	59.631	Canis_lupus_dingo
ENSACLG00000005288	smg6	80	55.704	ENSCHIG00000021998	SMG6	72	59.539	Capra_hircus
ENSACLG00000005288	smg6	80	54.879	ENSTSYG00000003406	SMG6	100	58.088	Carlito_syrichta
ENSACLG00000005288	smg6	74	52.982	ENSCAPG00000016197	SMG6	67	52.982	Cavia_aperea
ENSACLG00000005288	smg6	82	53.623	ENSCPOG00000014878	SMG6	90	58.667	Cavia_porcellus
ENSACLG00000005288	smg6	80	55.347	ENSCCAG00000035801	SMG6	71	59.263	Cebus_capucinus
ENSACLG00000005288	smg6	86	52.928	ENSCATG00000031956	SMG6	71	59.171	Cercocebus_atys
ENSACLG00000005288	smg6	82	54.214	ENSCLAG00000006748	SMG6	84	59.434	Chinchilla_lanigera
ENSACLG00000005288	smg6	84	53.903	ENSCSAG00000013800	SMG6	71	59.447	Chlorocebus_sabaeus
ENSACLG00000005288	smg6	91	52.721	ENSCPBG00000020369	SMG6	87	58.974	Chrysemys_picta_bellii
ENSACLG00000005288	smg6	86	53.218	ENSCANG00000031764	SMG6	100	59.007	Colobus_angolensis_palliatus
ENSACLG00000005288	smg6	80	50.471	ENSCGRG00000007782	Smg6	72	54.159	Cricetulus_griseus_crigri
ENSACLG00000005288	smg6	99	70.485	ENSCSEG00000012757	smg6	100	68.765	Cynoglossus_semilaevis
ENSACLG00000005288	smg6	100	69.453	ENSCVAG00000012789	smg6	100	69.052	Cyprinodon_variegatus
ENSACLG00000005288	smg6	100	56.639	ENSDARG00000100481	smg6	100	55.183	Danio_rerio
ENSACLG00000005288	smg6	80	54.738	ENSDNOG00000048283	SMG6	71	58.986	Dasypus_novemcinctus
ENSACLG00000005288	smg6	84	49.297	ENSDORG00000016614	Smg6	84	59.242	Dipodomys_ordii
ENSACLG00000005288	smg6	70	87.500	ENSETEG00000016790	SMG6	59	87.500	Echinops_telfairi
ENSACLG00000005288	smg6	64	47.451	ENSEBUG00000005059	smg6	64	44.695	Eptatretus_burgeri
ENSACLG00000005288	smg6	79	55.564	ENSEASG00005009318	SMG6	71	59.464	Equus_asinus_asinus
ENSACLG00000005288	smg6	79	55.564	ENSECAG00000006519	SMG6	71	59.464	Equus_caballus
ENSACLG00000005288	smg6	80	47.004	ENSEEUG00000003493	SMG6	68	57.895	Erinaceus_europaeus
ENSACLG00000005288	smg6	100	65.841	ENSELUG00000005934	smg6	98	68.636	Esox_lucius
ENSACLG00000005288	smg6	80	55.278	ENSFCAG00000028817	SMG6	72	59.447	Felis_catus
ENSACLG00000005288	smg6	83	53.649	ENSFALG00000006538	SMG6	73	59.099	Ficedula_albicollis
ENSACLG00000005288	smg6	86	52.762	ENSFDAG00000015106	SMG6	84	58.962	Fukomys_damarensis
ENSACLG00000005288	smg6	100	69.270	ENSFHEG00000013282	smg6	100	68.582	Fundulus_heteroclitus
ENSACLG00000005288	smg6	50	78.947	ENSGMOG00000019077	smg6	58	78.947	Gadus_morhua
ENSACLG00000005288	smg6	83	52.620	ENSGALG00000003108	SMG6	70	58.494	Gallus_gallus
ENSACLG00000005288	smg6	100	70.611	ENSGAFG00000000379	smg6	100	69.337	Gambusia_affinis
ENSACLG00000005288	smg6	90	76.113	ENSGACG00000020521	smg6	99	76.771	Gasterosteus_aculeatus
ENSACLG00000005288	smg6	80	54.052	ENSGAGG00000025617	SMG6	73	57.798	Gopherus_agassizii
ENSACLG00000005288	smg6	80	55.191	ENSGGOG00000017156	SMG6	71	59.355	Gorilla_gorilla
ENSACLG00000005288	smg6	100	98.494	ENSHBUG00000021311	smg6	100	98.362	Haplochromis_burtoni
ENSACLG00000005288	smg6	86	52.055	ENSHGLG00000012882	SMG6	84	59.434	Heterocephalus_glaber_female
ENSACLG00000005288	smg6	86	52.199	ENSHGLG00100017815	SMG6	84	59.434	Heterocephalus_glaber_male
ENSACLG00000005288	smg6	69	70.429	ENSHCOG00000008761	smg6	83	69.520	Hippocampus_comes
ENSACLG00000005288	smg6	100	54.362	ENSIPUG00000012493	smg6	100	53.243	Ictalurus_punctatus
ENSACLG00000005288	smg6	86	52.422	ENSSTOG00000028127	SMG6	84	58.768	Ictidomys_tridecemlineatus
ENSACLG00000005288	smg6	63	50.050	ENSJJAG00000015367	Smg6	61	55.752	Jaculus_jaculus
ENSACLG00000005288	smg6	100	74.162	ENSKMAG00000000279	smg6	100	72.067	Kryptolebias_marmoratus
ENSACLG00000005288	smg6	100	76.224	ENSLBEG00000002184	smg6	100	74.791	Labrus_bergylta
ENSACLG00000005288	smg6	83	53.120	ENSLAFG00000001261	SMG6	71	58.706	Loxodonta_africana
ENSACLG00000005288	smg6	86	53.218	ENSMFAG00000003394	SMG6	71	59.447	Macaca_fascicularis
ENSACLG00000005288	smg6	86	53.145	ENSMMUG00000023161	SMG6	71	59.355	Macaca_mulatta
ENSACLG00000005288	smg6	84	51.932	ENSMNEG00000044592	SMG6	71	56.100	Macaca_nemestrina
ENSACLG00000005288	smg6	81	60.177	ENSMLEG00000029353	SMG6	71	61.712	Mandrillus_leucophaeus
ENSACLG00000005288	smg6	100	77.293	ENSMAMG00000020119	smg6	100	77.864	Mastacembelus_armatus
ENSACLG00000005288	smg6	100	99.697	ENSMZEG00005024736	smg6	100	99.697	Maylandia_zebra
ENSACLG00000005288	smg6	73	44.435	ENSMGAG00000005401	-	61	58.177	Meleagris_gallopavo
ENSACLG00000005288	smg6	82	54.138	ENSMICG00000012913	SMG6	71	59.317	Microcebus_murinus
ENSACLG00000005288	smg6	100	70.741	ENSMMOG00000010883	smg6	100	68.535	Mola_mola
ENSACLG00000005288	smg6	80	56.003	ENSMODG00000010622	SMG6	72	59.578	Monodelphis_domestica
ENSACLG00000005288	smg6	100	78.286	ENSMALG00000001106	smg6	100	76.523	Monopterus_albus
ENSACLG00000005288	smg6	80	54.496	MGP_CAROLIEiJ_G0016729	Smg6	96	65.352	Mus_caroli
ENSACLG00000005288	smg6	80	54.710	ENSMUSG00000038290	Smg6	96	65.352	Mus_musculus
ENSACLG00000005288	smg6	80	54.631	MGP_PahariEiJ_G0017866	Smg6	96	64.804	Mus_pahari
ENSACLG00000005288	smg6	80	54.631	MGP_SPRETEiJ_G0017572	Smg6	96	65.070	Mus_spretus
ENSACLG00000005288	smg6	80	55.495	ENSMPUG00000013046	SMG6	72	59.467	Mustela_putorius_furo
ENSACLG00000005288	smg6	84	53.881	ENSMLUG00000005739	SMG6	72	59.392	Myotis_lucifugus
ENSACLG00000005288	smg6	80	54.524	ENSNGAG00000007287	Smg6	84	58.768	Nannospalax_galili
ENSACLG00000005288	smg6	100	93.194	ENSNBRG00000009511	smg6	99	96.105	Neolamprologus_brichardi
ENSACLG00000005288	smg6	84	53.675	ENSNLEG00000017171	SMG6	100	58.640	Nomascus_leucogenys
ENSACLG00000005288	smg6	80	54.581	ENSMEUG00000015804	SMG6	73	58.440	Notamacropus_eugenii
ENSACLG00000005288	smg6	55	63.784	ENSOPRG00000000579	SMG6	79	63.978	Ochotona_princeps
ENSACLG00000005288	smg6	82	47.568	ENSODEG00000008038	SMG6	81	52.907	Octodon_degus
ENSACLG00000005288	smg6	100	96.924	ENSONIG00000005594	smg6	100	96.725	Oreochromis_niloticus
ENSACLG00000005288	smg6	84	52.811	ENSOCUG00000013018	SMG6	71	59.171	Oryctolagus_cuniculus
ENSACLG00000005288	smg6	100	68.653	ENSORLG00000003317	smg6	100	68.206	Oryzias_latipes
ENSACLG00000005288	smg6	100	68.981	ENSORLG00020015343	smg6	100	68.089	Oryzias_latipes_hni
ENSACLG00000005288	smg6	100	69.216	ENSORLG00015020454	smg6	100	68.667	Oryzias_latipes_hsok
ENSACLG00000005288	smg6	100	69.156	ENSOMEG00000010838	smg6	100	68.851	Oryzias_melastigma
ENSACLG00000005288	smg6	84	53.675	ENSOGAG00000004483	SMG6	71	59.375	Otolemur_garnettii
ENSACLG00000005288	smg6	80	55.783	ENSOARG00000015076	SMG6	73	59.631	Ovis_aries
ENSACLG00000005288	smg6	86	52.899	ENSPPAG00000043296	SMG6	71	59.171	Pan_paniscus
ENSACLG00000005288	smg6	80	55.199	ENSPPRG00000014581	SMG6	72	59.447	Panthera_pardus
ENSACLG00000005288	smg6	80	55.199	ENSPTIG00000008925	SMG6	100	58.824	Panthera_tigris_altaica
ENSACLG00000005288	smg6	86	53.043	ENSPTRG00000008544	SMG6	100	58.640	Pan_troglodytes
ENSACLG00000005288	smg6	84	53.829	ENSPANG00000024588	SMG6	71	59.355	Papio_anubis
ENSACLG00000005288	smg6	74	51.967	ENSPSIG00000006660	SMG6	67	56.947	Pelodiscus_sinensis
ENSACLG00000005288	smg6	95	79.589	ENSPMGG00000000844	smg6	99	79.452	Periophthalmus_magnuspinnatus
ENSACLG00000005288	smg6	80	55.043	ENSPEMG00000020707	Smg6	85	58.294	Peromyscus_maniculatus_bairdii
ENSACLG00000005288	smg6	100	71.548	ENSPFOG00000012035	smg6	99	73.599	Poecilia_formosa
ENSACLG00000005288	smg6	100	71.456	ENSPLAG00000017660	smg6	100	70.078	Poecilia_latipinna
ENSACLG00000005288	smg6	100	71.613	ENSPMEG00000000258	smg6	100	69.958	Poecilia_mexicana
ENSACLG00000005288	smg6	100	70.895	ENSPREG00000010066	smg6	100	69.635	Poecilia_reticulata
ENSACLG00000005288	smg6	80	51.400	ENSPPYG00000007790	SMG6	71	54.771	Pongo_abelii
ENSACLG00000005288	smg6	80	60.183	ENSPCAG00000000552	SMG6	67	60.183	Procavia_capensis
ENSACLG00000005288	smg6	82	53.869	ENSPCOG00000020925	SMG6	71	59.171	Propithecus_coquereli
ENSACLG00000005288	smg6	76	62.968	ENSPVAG00000002159	SMG6	71	55.309	Pteropus_vampyrus
ENSACLG00000005288	smg6	100	94.056	ENSPNYG00000024151	smg6	99	96.707	Pundamilia_nyererei
ENSACLG00000005288	smg6	100	52.493	ENSPNAG00000015480	smg6	100	51.190	Pygocentrus_nattereri
ENSACLG00000005288	smg6	82	53.550	ENSRNOG00000003041	Smg6	96	65.915	Rattus_norvegicus
ENSACLG00000005288	smg6	86	53.406	ENSRBIG00000024746	SMG6	71	59.355	Rhinopithecus_bieti
ENSACLG00000005288	smg6	86	53.218	ENSRROG00000030423	SMG6	100	59.007	Rhinopithecus_roxellana
ENSACLG00000005288	smg6	80	55.191	ENSSBOG00000022518	SMG6	71	57.235	Saimiri_boliviensis_boliviensis
ENSACLG00000005288	smg6	80	55.677	ENSSHAG00000010045	SMG6	71	59.266	Sarcophilus_harrisii
ENSACLG00000005288	smg6	97	55.265	ENSSFOG00015005436	smg6	91	55.820	Scleropages_formosus
ENSACLG00000005288	smg6	100	76.240	ENSSMAG00000019777	smg6	100	74.985	Scophthalmus_maximus
ENSACLG00000005288	smg6	100	81.677	ENSSDUG00000016412	smg6	100	80.622	Seriola_dumerili
ENSACLG00000005288	smg6	97	81.167	ENSSLDG00000020747	smg6	98	80.962	Seriola_lalandi_dorsalis
ENSACLG00000005288	smg6	84	52.241	ENSSPUG00000007152	SMG6	89	50.258	Sphenodon_punctatus
ENSACLG00000005288	smg6	100	81.161	ENSSPAG00000015633	smg6	100	80.502	Stegastes_partitus
ENSACLG00000005288	smg6	80	55.625	ENSSSCG00000017826	SMG6	72	59.447	Sus_scrofa
ENSACLG00000005288	smg6	83	53.443	ENSTGUG00000005836	SMG6	69	60.019	Taeniopygia_guttata
ENSACLG00000005288	smg6	97	70.107	ENSTRUG00000000358	smg6	97	71.118	Takifugu_rubripes
ENSACLG00000005288	smg6	91	78.163	ENSTNIG00000016164	smg6	99	78.324	Tetraodon_nigroviridis
ENSACLG00000005288	smg6	80	52.388	ENSTBEG00000011424	SMG6	71	56.522	Tupaia_belangeri
ENSACLG00000005288	smg6	71	56.877	ENSTTRG00000001175	SMG6	62	56.815	Tursiops_truncatus
ENSACLG00000005288	smg6	80	55.172	ENSUAMG00000025152	SMG6	73	59.174	Ursus_americanus
ENSACLG00000005288	smg6	80	55.311	ENSUMAG00000009306	SMG6	73	59.355	Ursus_maritimus
ENSACLG00000005288	smg6	64	95.833	ENSVPAG00000000225	SMG6	58	95.833	Vicugna_pacos
ENSACLG00000005288	smg6	80	56.400	ENSVVUG00000021727	SMG6	74	59.851	Vulpes_vulpes
ENSACLG00000005288	smg6	71	55.596	ENSXETG00000023799	SMG6	85	51.200	Xenopus_tropicalis
ENSACLG00000005288	smg6	100	69.689	ENSXCOG00000009867	smg6	99	68.137	Xiphophorus_couchianus
ENSACLG00000005288	smg6	100	71.217	ENSXMAG00000010321	smg6	100	69.599	Xiphophorus_maculatus