EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000005487 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 12994 bases
Position: chr22:9675190-9688183
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000008100	zf-C2H2	PF00096.26	4e-17	1	3
ENSACLP00000008100	zf-C2H2	PF00096.26	4e-17	2	3
ENSACLP00000008100	zf-C2H2	PF00096.26	4e-17	3	3
ENSACLP00000008100	zf-met	PF12874.7	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000008267	-	1365	-	ENSACLP00000008080	454 (aa)	-	-
ENSACLT00000008287	-	1920	-	ENSACLP00000008100	639 (aa)	-	-

Gene Model

Click here to download ENSACLG00000005487's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000005487's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000005487	prdm1b	54	45.865	ENSACLG00000000537	-	99	45.865

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000005487	prdm1b	62	76.633	ENSAPOG00000022084	prdm1b	84	78.643	Acanthochromis_polyacanthus
ENSACLG00000005487	prdm1b	89	86.806	ENSACIG00000014426	prdm1b	93	86.806	Amphilophus_citrinellus
ENSACLG00000005487	prdm1b	88	77.249	ENSAOCG00000002230	prdm1b	97	76.950	Amphiprion_ocellaris
ENSACLG00000005487	prdm1b	88	76.950	ENSAPEG00000019826	prdm1b	94	76.215	Amphiprion_percula
ENSACLG00000005487	prdm1b	89	36.859	ENSATEG00000014034	-	80	36.699	Anabas_testudineus
ENSACLG00000005487	prdm1b	90	84.111	ENSATEG00000006924	prdm1b	93	84.111	Anabas_testudineus
ENSACLG00000005487	prdm1b	64	58.667	ENSCSEG00000009707	prdm1a	61	58.667	Cynoglossus_semilaevis
ENSACLG00000005487	prdm1b	90	78.163	ENSCVAG00000016746	prdm1b	92	78.571	Cyprinodon_variegatus
ENSACLG00000005487	prdm1b	90	79.094	ENSFHEG00000019848	prdm1b	93	79.094	Fundulus_heteroclitus
ENSACLG00000005487	prdm1b	89	81.067	ENSGAFG00000016191	prdm1b	93	81.239	Gambusia_affinis
ENSACLG00000005487	prdm1b	89	71.173	ENSGACG00000002716	prdm1b	87	71.173	Gasterosteus_aculeatus
ENSACLG00000005487	prdm1b	94	98.831	ENSHBUG00000001475	prdm1b	100	98.831	Haplochromis_burtoni
ENSACLG00000005487	prdm1b	90	73.459	ENSHCOG00000003617	prdm1b	93	73.459	Hippocampus_comes
ENSACLG00000005487	prdm1b	86	72.222	ENSIPUG00000013740	prdm1b	92	54.623	Ictalurus_punctatus
ENSACLG00000005487	prdm1b	88	74.561	ENSKMAG00000011218	prdm1b	91	74.561	Kryptolebias_marmoratus
ENSACLG00000005487	prdm1b	85	38.424	ENSKMAG00000016247	-	75	38.424	Kryptolebias_marmoratus
ENSACLG00000005487	prdm1b	90	82.705	ENSLBEG00000020955	prdm1b	93	82.705	Labrus_bergylta
ENSACLG00000005487	prdm1b	72	72.000	ENSLOCG00000004978	prdm1b	63	72.000	Lepisosteus_oculatus
ENSACLG00000005487	prdm1b	96	97.059	ENSMZEG00005026361	prdm1b	93	97.059	Maylandia_zebra
ENSACLG00000005487	prdm1b	90	83.160	ENSMMOG00000013458	prdm1b	95	83.160	Mola_mola
ENSACLG00000005487	prdm1b	89	80.522	ENSMALG00000011410	prdm1b	95	80.696	Monopterus_albus
ENSACLG00000005487	prdm1b	88	91.966	ENSONIG00000013583	prdm1b	77	91.966	Oreochromis_niloticus
ENSACLG00000005487	prdm1b	89	71.644	ENSORLG00000010025	prdm1b	95	71.477	Oryzias_latipes
ENSACLG00000005487	prdm1b	87	71.864	ENSORLG00015009022	prdm1b	92	71.695	Oryzias_latipes_hsok
ENSACLG00000005487	prdm1b	89	49.301	ENSPKIG00000022335	prdm1b	76	50.174	Paramormyrops_kingsleyae
ENSACLG00000005487	prdm1b	84	71.301	ENSPFOG00000003103	prdm1b	85	71.301	Poecilia_formosa
ENSACLG00000005487	prdm1b	89	81.787	ENSPLAG00000018491	prdm1b	92	81.787	Poecilia_latipinna
ENSACLG00000005487	prdm1b	90	83.304	ENSPMEG00000007869	prdm1b	93	83.304	Poecilia_mexicana
ENSACLG00000005487	prdm1b	89	81.399	ENSPREG00000011327	prdm1b	92	81.399	Poecilia_reticulata
ENSACLG00000005487	prdm1b	88	40.303	ENSPVAG00000011732	PRDM1	82	40.303	Pteropus_vampyrus
ENSACLG00000005487	prdm1b	84	42.734	ENSPNAG00000028442	prdm1a	75	41.903	Pygocentrus_nattereri
ENSACLG00000005487	prdm1b	87	59.464	ENSSFOG00015021896	prdm1b	78	59.464	Scleropages_formosus
ENSACLG00000005487	prdm1b	90	80.446	ENSSMAG00000020467	prdm1b	93	80.680	Scophthalmus_maximus
ENSACLG00000005487	prdm1b	85	38.835	ENSSDUG00000000524	-	75	38.486	Seriola_dumerili
ENSACLG00000005487	prdm1b	90	84.391	ENSSDUG00000020610	prdm1b	93	84.391	Seriola_dumerili
ENSACLG00000005487	prdm1b	85	38.065	ENSSLDG00000001957	-	75	37.881	Seriola_lalandi_dorsalis
ENSACLG00000005487	prdm1b	89	85.043	ENSSLDG00000021973	prdm1b	94	85.043	Seriola_lalandi_dorsalis
ENSACLG00000005487	prdm1b	91	37.519	ENSSPAG00000009830	-	81	37.348	Stegastes_partitus
ENSACLG00000005487	prdm1b	90	81.282	ENSSPAG00000000803	prdm1b	94	81.456	Stegastes_partitus
ENSACLG00000005487	prdm1b	90	81.597	ENSXCOG00000018920	prdm1b	82	81.597	Xiphophorus_couchianus
ENSACLG00000005487	prdm1b	89	80.035	ENSXMAG00000016765	prdm1b	93	80.702	Xiphophorus_maculatus