EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000005676 (Gene tree)
Gene ID: 113036335
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 8225 bases
Position: chr14:11329134-11337358
Accession: 113036335
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000008347	RRM_1	PF00076.22	2.7e-32	1	2
ENSACLP00000008347	RRM_1	PF00076.22	2.7e-32	2	2
ENSACLP00000008357	RRM_1	PF00076.22	3.6e-32	1	2
ENSACLP00000008357	RRM_1	PF00076.22	3.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000008549	-	1053	-	ENSACLP00000008357	244 (aa)	XP_026048410	UPI00022B16C8
ENSACLT00000008539	-	795	-	ENSACLP00000008347	264 (aa)	-	-

Gene Model

Click here to download ENSACLG00000005676's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000005676's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000005676	-	66	47.337	ENSACLG00000003395	srsf4	65	43.182
ENSACLG00000005676	-	66	42.391	ENSACLG00000027166	srsf5a	60	41.304
ENSACLG00000005676	-	64	43.333	ENSACLG00000026424	srsf5b	60	39.267
ENSACLG00000005676	-	75	70.330	ENSACLG00000015678	srsf9	71	71.978
ENSACLG00000005676	-	95	74.590	ENSACLG00000021693	-	80	82.587

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000005676	-	73	87.293	ENSACIG00000002623	-	96	88.043	Amphilophus_citrinellus
ENSACLG00000005676	-	93	55.833	WBGene00004700	rsp-3	75	62.564	Caenorhabditis_elegans
ENSACLG00000005676	-	73	72.778	ENSCING00000007375	-	76	72.067	Ciona_intestinalis
ENSACLG00000005676	-	71	58.046	ENSCING00000000257	-	75	70.312	Ciona_intestinalis
ENSACLG00000005676	-	61	60.000	ENSCSAVG00000003567	-	76	66.142	Ciona_savignyi
ENSACLG00000005676	-	73	72.376	ENSCSAVG00000006093	-	91	70.950	Ciona_savignyi
ENSACLG00000005676	-	73	68.280	FBgn0283477	SF2	73	68.280	Drosophila_melanogaster
ENSACLG00000005676	-	98	75.732	ENSEBUG00000009582	-	82	80.952	Eptatretus_burgeri
ENSACLG00000005676	-	77	85.204	ENSFHEG00000017425	-	97	84.324	Fundulus_heteroclitus
ENSACLG00000005676	-	73	96.133	ENSGMOG00000010606	-	98	96.175	Gadus_morhua
ENSACLG00000005676	-	100	99.184	ENSGAFG00000012721	-	100	99.184	Gambusia_affinis
ENSACLG00000005676	-	79	85.075	ENSGAFG00000000609	-	79	85.279	Gambusia_affinis
ENSACLG00000005676	-	73	97.778	ENSGACG00000011094	-	99	97.297	Gasterosteus_aculeatus
ENSACLG00000005676	-	80	82.039	ENSHBUG00000015576	-	80	83.000	Haplochromis_burtoni
ENSACLG00000005676	-	77	83.333	ENSHCOG00000008016	-	77	81.250	Hippocampus_comes
ENSACLG00000005676	-	99	81.148	ENSMFAG00000034223	-	65	88.601	Macaca_fascicularis
ENSACLG00000005676	-	78	84.422	ENSMZEG00005019071	-	98	84.043	Maylandia_zebra
ENSACLG00000005676	-	100	100.000	ENSMZEG00005007947	-	100	100.000	Maylandia_zebra
ENSACLG00000005676	-	78	86.528	ENSMMOG00000018849	-	78	86.528	Mola_mola
ENSACLG00000005676	-	78	86.842	ENSNBRG00000008134	-	76	86.842	Neolamprologus_brichardi
ENSACLG00000005676	-	100	100.000	ENSNBRG00000019981	-	100	100.000	Neolamprologus_brichardi
ENSACLG00000005676	-	66	69.136	ENSOPRG00000004745	-	96	67.702	Ochotona_princeps
ENSACLG00000005676	-	78	83.168	ENSONIG00000004857	-	80	84.653	Oreochromis_niloticus
ENSACLG00000005676	-	57	83.453	ENSOANG00000007320	-	54	94.318	Ornithorhynchus_anatinus
ENSACLG00000005676	-	68	54.819	ENSOCUG00000026856	-	95	55.357	Oryctolagus_cuniculus
ENSACLG00000005676	-	78	87.113	ENSORLG00000005314	-	76	88.660	Oryzias_latipes
ENSACLG00000005676	-	78	87.113	ENSORLG00015015497	-	76	88.660	Oryzias_latipes_hsok
ENSACLG00000005676	-	78	85.427	ENSOMEG00000017711	-	76	86.935	Oryzias_melastigma
ENSACLG00000005676	-	73	98.889	ENSPLAG00000019613	-	73	98.901	Poecilia_latipinna
ENSACLG00000005676	-	100	97.581	ENSPLAG00000019553	-	100	97.581	Poecilia_latipinna
ENSACLG00000005676	-	79	85.930	ENSPREG00000016792	-	79	86.154	Poecilia_reticulata
ENSACLG00000005676	-	78	83.085	ENSPNYG00000020651	-	77	84.577	Pundamilia_nyererei
ENSACLG00000005676	-	100	100.000	ENSPNYG00000017115	-	100	100.000	Pundamilia_nyererei
ENSACLG00000005676	-	83	92.157	ENSSFOG00015004989	-	70	91.667	Scleropages_formosus
ENSACLG00000005676	-	78	84.615	ENSSDUG00000003887	-	79	84.615	Seriola_dumerili
ENSACLG00000005676	-	78	87.435	ENSTRUG00000017058	-	79	86.911	Takifugu_rubripes
ENSACLG00000005676	-	78	84.375	ENSTNIG00000009993	-	80	83.854	Tetraodon_nigroviridis
ENSACLG00000005676	-	100	97.581	ENSXCOG00000009643	-	100	97.581	Xiphophorus_couchianus
ENSACLG00000005676	-	79	86.528	ENSXCOG00000017888	-	78	87.166	Xiphophorus_couchianus
ENSACLG00000005676	-	79	85.500	ENSXMAG00000010797	-	79	85.714	Xiphophorus_maculatus