EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000006469 (Gene tree)
Gene ID: 113024021
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 24685 bases
Position: chr6:16284515-16309199
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000009463	RRM_1	PF00076.22	0.00025	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000009686	-	5633	-	ENSACLP00000009463	1858 (aa)	-	-

Gene Model

Click here to download ENSACLG00000006469's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000006469's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000006469	tnrc6c2	93	52.896	ENSACLG00000000424	tnrc6c1	99	53.079

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000006469	tnrc6c2	99	88.437	ENSAOCG00000017648	tnrc6c2	99	88.383	Amphiprion_ocellaris
ENSACLG00000006469	tnrc6c2	83	89.956	ENSATEG00000003656	tnrc6c2	100	89.956	Anabas_testudineus
ENSACLG00000006469	tnrc6c2	88	58.736	ENSAMXG00000009579	tnrc6c2	100	56.778	Astyanax_mexicanus
ENSACLG00000006469	tnrc6c2	93	57.119	ENSDARG00000103851	tnrc6c2	100	55.483	Danio_rerio
ENSACLG00000006469	tnrc6c2	88	60.988	ENSELUG00000007206	tnrc6c2	97	74.227	Esox_lucius
ENSACLG00000006469	tnrc6c2	84	56.456	ENSELUG00000008149	-	98	80.758	Esox_lucius
ENSACLG00000006469	tnrc6c2	93	81.462	ENSFHEG00000003901	tnrc6c2	100	83.161	Fundulus_heteroclitus
ENSACLG00000006469	tnrc6c2	99	67.808	ENSGACG00000019401	tnrc6c2	100	74.200	Gasterosteus_aculeatus
ENSACLG00000006469	tnrc6c2	100	99.785	ENSHBUG00000018310	tnrc6c2	100	99.785	Haplochromis_burtoni
ENSACLG00000006469	tnrc6c2	99	78.251	ENSHCOG00000017802	tnrc6c2	99	77.582	Hippocampus_comes
ENSACLG00000006469	tnrc6c2	88	54.339	ENSIPUG00000022767	tnrc6c2	100	52.270	Ictalurus_punctatus
ENSACLG00000006469	tnrc6c2	88	88.740	ENSMAMG00000001718	tnrc6c2	100	88.375	Mastacembelus_armatus
ENSACLG00000006469	tnrc6c2	100	99.946	ENSMZEG00005023905	tnrc6c2	100	99.946	Maylandia_zebra
ENSACLG00000006469	tnrc6c2	88	86.292	ENSMALG00000020932	tnrc6c2	100	86.473	Monopterus_albus
ENSACLG00000006469	tnrc6c2	84	99.230	ENSNBRG00000000452	tnrc6c2	57	95.022	Neolamprologus_brichardi
ENSACLG00000006469	tnrc6c2	86	92.773	ENSONIG00000018123	tnrc6c2	100	92.893	Oreochromis_niloticus
ENSACLG00000006469	tnrc6c2	99	80.990	ENSORLG00000003327	tnrc6c2	99	81.307	Oryzias_latipes
ENSACLG00000006469	tnrc6c2	99	81.370	ENSORLG00020010730	tnrc6c2	99	81.370	Oryzias_latipes_hni
ENSACLG00000006469	tnrc6c2	99	81.424	ENSORLG00015009232	tnrc6c2	98	81.103	Oryzias_latipes_hsok
ENSACLG00000006469	tnrc6c2	99	82.460	ENSOMEG00000017952	tnrc6c2	99	82.139	Oryzias_melastigma
ENSACLG00000006469	tnrc6c2	92	77.436	ENSPFOG00000011590	tnrc6c2	99	77.119	Poecilia_formosa
ENSACLG00000006469	tnrc6c2	99	82.095	ENSPMEG00000012946	tnrc6c2	98	83.324	Poecilia_mexicana
ENSACLG00000006469	tnrc6c2	88	79.300	ENSPREG00000015823	tnrc6c2	61	87.987	Poecilia_reticulata
ENSACLG00000006469	tnrc6c2	88	99.450	ENSPNYG00000002582	tnrc6c2	100	99.450	Pundamilia_nyererei
ENSACLG00000006469	tnrc6c2	88	57.788	ENSPNAG00000026838	tnrc6c2	100	57.594	Pygocentrus_nattereri
ENSACLG00000006469	tnrc6c2	88	85.576	ENSSMAG00000015145	tnrc6c2	100	85.879	Scophthalmus_maximus
ENSACLG00000006469	tnrc6c2	88	90.201	ENSSDUG00000020741	tnrc6c2	100	90.505	Seriola_dumerili
ENSACLG00000006469	tnrc6c2	88	89.897	ENSSLDG00000002077	tnrc6c2	100	90.201	Seriola_lalandi_dorsalis
ENSACLG00000006469	tnrc6c2	99	89.727	ENSSPAG00000013052	tnrc6c2	99	89.834	Stegastes_partitus
ENSACLG00000006469	tnrc6c2	85	85.011	ENSTNIG00000004178	tnrc6c2	94	84.573	Tetraodon_nigroviridis
ENSACLG00000006469	tnrc6c2	88	83.900	ENSXMAG00000006739	tnrc6c2	100	84.326	Xiphophorus_maculatus