EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000006940 (Gene tree)
Gene ID: 113013145
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1-like
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 7421 bases
Position: chr20:29541816-29549236
Accession: 113013145
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000010159	RRM_1	PF00076.22	5.2e-36	1	2
ENSACLP00000010159	RRM_1	PF00076.22	5.2e-36	2	2
ENSACLP00000010148	RRM_1	PF00076.22	5.3e-36	1	2
ENSACLP00000010148	RRM_1	PF00076.22	5.3e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000010402	-	2260	-	ENSACLP00000010159	335 (aa)	XP_026009596	UPI000E420ABD
ENSACLT00000010391	-	5775	-	ENSACLP00000010148	336 (aa)	-	-

Gene Model

Click here to download ENSACLG00000006940's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000006940's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000006940	-	86	33.449	ENSACLG00000025213	hnrnpd	57	39.785
ENSACLG00000006940	-	58	39.896	ENSACLG00000000117	-	53	40.541
ENSACLG00000006940	-	53	56.742	ENSACLG00000008978	-	92	52.358
ENSACLG00000006940	-	57	82.723	ENSACLG00000008532	hnrnpa3	66	77.130
ENSACLG00000006940	-	73	37.037	ENSACLG00000007752	msi2a	57	41.860
ENSACLG00000006940	-	57	38.202	ENSACLG00000024583	-	66	38.418
ENSACLG00000006940	-	54	36.471	ENSACLG00000007958	hnrnpaba	59	34.634
ENSACLG00000006940	-	57	40.541	ENSACLG00000011230	MSI1	82	40.777
ENSACLG00000006940	-	77	36.863	ENSACLG00000026497	hnrnpd	64	40.698
ENSACLG00000006940	-	54	36.471	ENSACLG00000007827	hnrnpaba	63	34.634
ENSACLG00000006940	-	53	51.397	ENSACLG00000008973	HNRNPA0	95	42.509

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000006940	-	91	89.145	ENSAPOG00000019369	-	90	89.474	Acanthochromis_polyacanthus
ENSACLG00000006940	-	53	56.180	ENSACIG00000021815	-	87	56.180	Amphilophus_citrinellus
ENSACLG00000006940	-	68	94.273	ENSAOCG00000005289	-	90	89.803	Amphiprion_ocellaris
ENSACLG00000006940	-	68	94.273	ENSAPEG00000004179	-	90	89.803	Amphiprion_percula
ENSACLG00000006940	-	52	59.748	ENSATEG00000003423	-	75	59.748	Anabas_testudineus
ENSACLG00000006940	-	68	94.273	ENSATEG00000022918	hnrnpa1a	88	96.257	Anabas_testudineus
ENSACLG00000006940	-	54	56.593	ENSACAG00000017109	-	91	44.781	Anolis_carolinensis
ENSACLG00000006940	-	54	63.277	ENSAMXG00000037730	-	63	58.796	Astyanax_mexicanus
ENSACLG00000006940	-	57	84.293	ENSAMXG00000006296	hnrnpa1a	90	63.205	Astyanax_mexicanus
ENSACLG00000006940	-	53	55.814	ENSCSEG00000014051	-	73	54.237	Cynoglossus_semilaevis
ENSACLG00000006940	-	68	87.500	ENSCSEG00000007589	hnrnpa1a	90	82.222	Cynoglossus_semilaevis
ENSACLG00000006940	-	68	92.982	ENSCVAG00000012637	hnrnpa1a	66	93.363	Cyprinodon_variegatus
ENSACLG00000006940	-	57	81.250	ENSDARG00000011020	hnrnpa1a	86	61.493	Danio_rerio
ENSACLG00000006940	-	61	56.281	ENSDORG00000026425	-	64	43.494	Dipodomys_ordii
ENSACLG00000006940	-	59	87.755	ENSELUG00000007372	-	51	90.164	Esox_lucius
ENSACLG00000006940	-	55	61.667	ENSGMOG00000020353	-	94	62.011	Gadus_morhua
ENSACLG00000006940	-	53	53.933	ENSGAFG00000016803	-	64	50.935	Gambusia_affinis
ENSACLG00000006940	-	91	84.365	ENSGAFG00000007751	-	66	95.133	Gambusia_affinis
ENSACLG00000006940	-	63	89.944	ENSGACG00000009435	-	60	89.560	Gasterosteus_aculeatus
ENSACLG00000006940	-	100	99.403	ENSHBUG00000005647	hnrnpa1a	100	99.403	Haplochromis_burtoni
ENSACLG00000006940	-	56	85.561	ENSIPUG00000022440	-	72	85.030	Ictalurus_punctatus
ENSACLG00000006940	-	57	84.409	ENSIPUG00000002023	hnrnpa1a	76	86.286	Ictalurus_punctatus
ENSACLG00000006940	-	55	62.921	ENSIPUG00000001991	-	77	62.921	Ictalurus_punctatus
ENSACLG00000006940	-	54	66.851	ENSJJAG00000009178	-	80	51.228	Jaculus_jaculus
ENSACLG00000006940	-	68	95.595	ENSKMAG00000020859	-	67	95.595	Kryptolebias_marmoratus
ENSACLG00000006940	-	68	91.228	ENSLBEG00000010010	hnrnpa1a	91	77.532	Labrus_bergylta
ENSACLG00000006940	-	64	72.432	ENSMFAG00000028351	-	63	67.593	Macaca_fascicularis
ENSACLG00000006940	-	68	94.273	ENSMAMG00000007606	-	66	92.511	Mastacembelus_armatus
ENSACLG00000006940	-	100	99.701	ENSMZEG00005027173	hnrnpa1a	100	99.701	Maylandia_zebra
ENSACLG00000006940	-	82	75.362	ENSMMOG00000008251	hnrnpa1a	93	85.398	Mola_mola
ENSACLG00000006940	-	53	56.497	ENSMALG00000008886	-	86	56.497	Monopterus_albus
ENSACLG00000006940	-	68	94.273	ENSMALG00000014091	hnrnpa1a	65	92.511	Monopterus_albus
ENSACLG00000006940	-	100	98.806	ENSNBRG00000018441	-	100	98.806	Neolamprologus_brichardi
ENSACLG00000006940	-	58	57.592	ENSNBRG00000014469	-	82	60.227	Neolamprologus_brichardi
ENSACLG00000006940	-	54	51.977	ENSORLG00000029240	-	89	52.874	Oryzias_latipes
ENSACLG00000006940	-	91	89.836	ENSORLG00000008001	-	68	94.248	Oryzias_latipes
ENSACLG00000006940	-	53	51.724	ENSORLG00020006043	-	59	51.724	Oryzias_latipes_hni
ENSACLG00000006940	-	53	51.977	ENSORLG00020022498	-	80	52.874	Oryzias_latipes_hni
ENSACLG00000006940	-	91	89.836	ENSORLG00020006582	hnrnpa1a	98	93.333	Oryzias_latipes_hni
ENSACLG00000006940	-	95	93.458	ENSORLG00015022294	-	95	93.458	Oryzias_latipes_hsok
ENSACLG00000006940	-	100	89.349	ENSOMEG00000015959	-	94	93.438	Oryzias_melastigma
ENSACLG00000006940	-	58	56.452	ENSPMGG00000016392	-	93	58.101	Periophthalmus_magnuspinnatus
ENSACLG00000006940	-	56	94.086	ENSPMGG00000011804	hnrnpa1a	80	84.305	Periophthalmus_magnuspinnatus
ENSACLG00000006940	-	68	94.737	ENSPFOG00000001825	-	66	95.133	Poecilia_formosa
ENSACLG00000006940	-	68	94.737	ENSPMEG00000002425	-	66	95.133	Poecilia_mexicana
ENSACLG00000006940	-	58	57.592	ENSPNYG00000020729	-	90	60.227	Pundamilia_nyererei
ENSACLG00000006940	-	55	86.842	ENSPNAG00000007752	hnrnpa1a	86	77.523	Pygocentrus_nattereri
ENSACLG00000006940	-	91	61.934	ENSPNAG00000021630	-	56	86.413	Pygocentrus_nattereri
ENSACLG00000006940	-	64	89.252	ENSSMAG00000004641	hnrnpa1a	97	74.118	Scophthalmus_maximus
ENSACLG00000006940	-	53	59.639	ENSSMAG00000010279	-	93	59.639	Scophthalmus_maximus
ENSACLG00000006940	-	53	55.682	ENSSMAG00000010246	-	79	55.367	Scophthalmus_maximus
ENSACLG00000006940	-	89	97.872	ENSSDUG00000013908	hnrnpa1a	92	88.288	Seriola_dumerili
ENSACLG00000006940	-	53	60.819	ENSSDUG00000002431	-	82	60.116	Seriola_dumerili
ENSACLG00000006940	-	89	97.826	ENSSLDG00000003718	hnrnpa1a	94	87.879	Seriola_lalandi_dorsalis
ENSACLG00000006940	-	92	87.821	ENSSPAG00000018518	-	69	89.868	Stegastes_partitus
ENSACLG00000006940	-	68	88.210	ENSTRUG00000020491	-	70	88.210	Takifugu_rubripes
ENSACLG00000006940	-	57	61.538	ENSTNIG00000007398	-	84	56.364	Tetraodon_nigroviridis
ENSACLG00000006940	-	81	76.557	ENSXCOG00000009001	-	95	91.111	Xiphophorus_couchianus
ENSACLG00000006940	-	68	95.175	ENSXMAG00000008076	-	65	95.575	Xiphophorus_maculatus