EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000007181 (Gene tree)
Gene ID: 113010014
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 9449 bases
Position: chr18:22908348-22917796
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000010541	UPF1_Zn_bind	PF09416.10	2.3e-75	1	1
ENSACLP00000010541	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000010792	-	3291	-	ENSACLP00000010541	1096 (aa)	-	-

Gene Model

Click here to download ENSACLG00000007181's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000007181's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000007181	upf1	100	93.188	ENSACLG00000022630	-	100	93.188

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000007181	upf1	100	91.103	ENSG00000005007	UPF1	100	90.756	Homo_sapiens
ENSACLG00000007181	upf1	100	97.484	ENSAPOG00000023773	upf1	100	97.484	Acanthochromis_polyacanthus
ENSACLG00000007181	upf1	100	93.279	ENSAPOG00000010916	-	100	93.279	Acanthochromis_polyacanthus
ENSACLG00000007181	upf1	100	90.619	ENSAMEG00000011474	UPF1	100	90.274	Ailuropoda_melanoleuca
ENSACLG00000007181	upf1	93	92.976	ENSACIG00000010985	-	100	93.073	Amphilophus_citrinellus
ENSACLG00000007181	upf1	100	99.544	ENSACIG00000019949	upf1	100	99.544	Amphilophus_citrinellus
ENSACLG00000007181	upf1	100	93.279	ENSAOCG00000006352	-	100	93.279	Amphiprion_ocellaris
ENSACLG00000007181	upf1	100	97.484	ENSAOCG00000018519	upf1	100	97.484	Amphiprion_ocellaris
ENSACLG00000007181	upf1	100	93.279	ENSAPEG00000006292	-	100	93.279	Amphiprion_percula
ENSACLG00000007181	upf1	100	97.484	ENSAPEG00000016344	upf1	100	97.484	Amphiprion_percula
ENSACLG00000007181	upf1	100	93.279	ENSATEG00000016606	-	100	93.279	Anabas_testudineus
ENSACLG00000007181	upf1	100	96.057	ENSATEG00000017867	upf1	100	96.057	Anabas_testudineus
ENSACLG00000007181	upf1	95	92.729	ENSAPLG00000009175	UPF1	100	92.694	Anas_platyrhynchos
ENSACLG00000007181	upf1	95	91.004	ENSANAG00000024107	UPF1	95	90.539	Aotus_nancymaae
ENSACLG00000007181	upf1	100	94.636	ENSAMXG00000042187	upf1	100	94.480	Astyanax_mexicanus
ENSACLG00000007181	upf1	100	90.636	ENSBTAG00000020922	UPF1	100	90.291	Bos_taurus
ENSACLG00000007181	upf1	81	54.576	WBGene00004880	smg-2	89	51.484	Caenorhabditis_elegans
ENSACLG00000007181	upf1	100	90.220	ENSCJAG00000019627	UPF1	100	89.877	Callithrix_jacchus
ENSACLG00000007181	upf1	100	90.396	ENSCAFG00000014578	UPF1	100	90.053	Canis_familiaris
ENSACLG00000007181	upf1	100	91.281	ENSCAFG00020012347	UPF1	100	90.933	Canis_lupus_dingo
ENSACLG00000007181	upf1	100	91.525	ENSCHIG00000011018	UPF1	100	91.176	Capra_hircus
ENSACLG00000007181	upf1	95	92.424	ENSTSYG00000008877	UPF1	98	91.958	Carlito_syrichta
ENSACLG00000007181	upf1	96	91.760	ENSCAPG00000005758	UPF1	95	91.769	Cavia_aperea
ENSACLG00000007181	upf1	100	91.487	ENSCPOG00000025463	UPF1	100	90.958	Cavia_porcellus
ENSACLG00000007181	upf1	100	91.103	ENSCCAG00000032175	UPF1	100	90.756	Cebus_capucinus
ENSACLG00000007181	upf1	94	92.395	ENSCATG00000040306	UPF1	98	91.517	Cercocebus_atys
ENSACLG00000007181	upf1	95	92.424	ENSCLAG00000004037	UPF1	99	91.864	Chinchilla_lanigera
ENSACLG00000007181	upf1	100	91.103	ENSCSAG00000005276	UPF1	100	90.756	Chlorocebus_sabaeus
ENSACLG00000007181	upf1	100	91.682	ENSCPBG00000012513	UPF1	100	91.644	Chrysemys_picta_bellii
ENSACLG00000007181	upf1	77	79.812	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSACLG00000007181	upf1	99	73.063	ENSCSAVG00000006533	-	99	73.112	Ciona_savignyi
ENSACLG00000007181	upf1	95	92.330	ENSCANG00000029819	UPF1	97	91.864	Colobus_angolensis_palliatus
ENSACLG00000007181	upf1	100	91.332	ENSCGRG00001021067	Upf1	100	90.893	Cricetulus_griseus_chok1gshd
ENSACLG00000007181	upf1	95	92.140	ENSCGRG00000013480	Upf1	98	91.580	Cricetulus_griseus_crigri
ENSACLG00000007181	upf1	100	93.388	ENSCSEG00000016159	-	100	93.358	Cynoglossus_semilaevis
ENSACLG00000007181	upf1	100	90.628	ENSCSEG00000017239	upf1	100	90.628	Cynoglossus_semilaevis
ENSACLG00000007181	upf1	100	92.916	ENSCVAG00000010561	upf1	100	92.916	Cyprinodon_variegatus
ENSACLG00000007181	upf1	100	94.545	ENSDARG00000016302	upf1	100	94.570	Danio_rerio
ENSACLG00000007181	upf1	95	89.972	ENSDORG00000009984	Upf1	95	89.414	Dipodomys_ordii
ENSACLG00000007181	upf1	85	72.465	FBgn0030354	Upf1	81	71.132	Drosophila_melanogaster
ENSACLG00000007181	upf1	54	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSACLG00000007181	upf1	100	91.525	ENSEASG00005006549	UPF1	100	91.176	Equus_asinus_asinus
ENSACLG00000007181	upf1	100	91.525	ENSECAG00000010639	UPF1	100	91.176	Equus_caballus
ENSACLG00000007181	upf1	100	92.716	ENSELUG00000012916	-	100	92.086	Esox_lucius
ENSACLG00000007181	upf1	100	94.134	ENSELUG00000020917	upf1	100	93.841	Esox_lucius
ENSACLG00000007181	upf1	100	90.396	ENSFCAG00000009757	UPF1	100	90.053	Felis_catus
ENSACLG00000007181	upf1	95	93.251	ENSFALG00000009312	UPF1	96	93.219	Ficedula_albicollis
ENSACLG00000007181	upf1	95	92.330	ENSFDAG00000014816	UPF1	99	91.769	Fukomys_damarensis
ENSACLG00000007181	upf1	100	93.063	ENSFHEG00000006428	upf1	100	91.982	Fundulus_heteroclitus
ENSACLG00000007181	upf1	86	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSACLG00000007181	upf1	100	91.547	ENSGMOG00000007541	upf1	100	91.817	Gadus_morhua
ENSACLG00000007181	upf1	100	91.444	ENSGALG00000003220	UPF1	100	91.316	Gallus_gallus
ENSACLG00000007181	upf1	100	93.000	ENSGAFG00000004831	upf1	100	93.019	Gambusia_affinis
ENSACLG00000007181	upf1	63	96.542	ENSGAFG00000015443	-	85	96.542	Gambusia_affinis
ENSACLG00000007181	upf1	100	92.183	ENSGAGG00000022217	UPF1	100	92.238	Gopherus_agassizii
ENSACLG00000007181	upf1	95	93.301	ENSGGOG00000002608	UPF1	99	92.830	Gorilla_gorilla
ENSACLG00000007181	upf1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSACLG00000007181	upf1	89	100.000	ENSHBUG00000014694	upf1	100	100.000	Haplochromis_burtoni
ENSACLG00000007181	upf1	100	90.220	ENSHGLG00000010900	UPF1	100	90.265	Heterocephalus_glaber_female
ENSACLG00000007181	upf1	95	90.625	ENSHGLG00100005904	UPF1	96	90.580	Heterocephalus_glaber_male
ENSACLG00000007181	upf1	100	92.909	ENSHCOG00000008918	upf1	100	92.851	Hippocampus_comes
ENSACLG00000007181	upf1	100	94.727	ENSIPUG00000005108	UPF1	100	94.751	Ictalurus_punctatus
ENSACLG00000007181	upf1	100	91.103	ENSSTOG00000009196	UPF1	100	90.667	Ictidomys_tridecemlineatus
ENSACLG00000007181	upf1	100	90.603	ENSJJAG00000023151	Upf1	100	90.168	Jaculus_jaculus
ENSACLG00000007181	upf1	100	92.916	ENSKMAG00000004962	upf1	100	92.916	Kryptolebias_marmoratus
ENSACLG00000007181	upf1	100	92.922	ENSLBEG00000027848	-	100	92.922	Labrus_bergylta
ENSACLG00000007181	upf1	100	96.316	ENSLBEG00000014862	upf1	100	96.316	Labrus_bergylta
ENSACLG00000007181	upf1	63	92.745	ENSLACG00000008482	UPF1	100	92.176	Latimeria_chalumnae
ENSACLG00000007181	upf1	100	93.909	ENSLOCG00000002072	upf1	100	93.909	Lepisosteus_oculatus
ENSACLG00000007181	upf1	100	90.291	ENSLAFG00000014963	UPF1	100	90.248	Loxodonta_africana
ENSACLG00000007181	upf1	100	90.861	ENSMFAG00000037748	UPF1	100	90.514	Macaca_fascicularis
ENSACLG00000007181	upf1	100	90.619	ENSMMUG00000023286	UPF1	100	90.274	Macaca_mulatta
ENSACLG00000007181	upf1	100	90.861	ENSMNEG00000000046	UPF1	100	90.514	Macaca_nemestrina
ENSACLG00000007181	upf1	95	92.330	ENSMLEG00000028404	UPF1	99	91.864	Mandrillus_leucophaeus
ENSACLG00000007181	upf1	100	96.326	ENSMAMG00000006229	upf1	100	96.326	Mastacembelus_armatus
ENSACLG00000007181	upf1	100	93.103	ENSMAMG00000006231	-	100	93.103	Mastacembelus_armatus
ENSACLG00000007181	upf1	100	93.188	ENSMZEG00005016386	-	100	93.188	Maylandia_zebra
ENSACLG00000007181	upf1	100	98.828	ENSMZEG00005003489	upf1	100	98.828	Maylandia_zebra
ENSACLG00000007181	upf1	95	92.242	ENSMGAG00000004745	UPF1	100	92.205	Meleagris_gallopavo
ENSACLG00000007181	upf1	95	92.140	ENSMAUG00000011398	Upf1	95	91.580	Mesocricetus_auratus
ENSACLG00000007181	upf1	100	91.192	ENSMICG00000001659	UPF1	100	90.844	Microcebus_murinus
ENSACLG00000007181	upf1	100	90.442	ENSMOCG00000005699	Upf1	100	90.097	Microtus_ochrogaster
ENSACLG00000007181	upf1	95	90.526	ENSMMOG00000007537	-	99	90.526	Mola_mola
ENSACLG00000007181	upf1	100	95.533	ENSMMOG00000007881	upf1	100	95.898	Mola_mola
ENSACLG00000007181	upf1	100	90.334	ENSMODG00000003689	UPF1	100	90.468	Monodelphis_domestica
ENSACLG00000007181	upf1	100	91.946	ENSMALG00000018100	-	100	91.946	Monopterus_albus
ENSACLG00000007181	upf1	100	96.354	ENSMALG00000000144	upf1	100	96.354	Monopterus_albus
ENSACLG00000007181	upf1	100	91.242	MGP_CAROLIEiJ_G0031142	Upf1	100	90.804	Mus_caroli
ENSACLG00000007181	upf1	100	91.242	ENSMUSG00000058301	Upf1	100	90.804	Mus_musculus
ENSACLG00000007181	upf1	100	91.242	MGP_PahariEiJ_G0021607	Upf1	100	90.804	Mus_pahari
ENSACLG00000007181	upf1	100	91.242	MGP_SPRETEiJ_G0032260	Upf1	100	90.804	Mus_spretus
ENSACLG00000007181	upf1	100	91.281	ENSMPUG00000015516	UPF1	100	90.933	Mustela_putorius_furo
ENSACLG00000007181	upf1	99	91.161	ENSMLUG00000012122	UPF1	99	90.812	Myotis_lucifugus
ENSACLG00000007181	upf1	100	90.026	ENSNGAG00000024107	Upf1	100	89.594	Nannospalax_galili
ENSACLG00000007181	upf1	100	89.755	ENSNBRG00000022069	-	100	92.323	Neolamprologus_brichardi
ENSACLG00000007181	upf1	100	97.901	ENSNBRG00000000670	upf1	100	97.901	Neolamprologus_brichardi
ENSACLG00000007181	upf1	95	86.648	ENSNLEG00000006062	UPF1	99	86.187	Nomascus_leucogenys
ENSACLG00000007181	upf1	83	86.796	ENSMEUG00000014146	-	83	86.667	Notamacropus_eugenii
ENSACLG00000007181	upf1	95	86.890	ENSOPRG00000014018	UPF1	99	86.138	Ochotona_princeps
ENSACLG00000007181	upf1	100	91.480	ENSODEG00000012426	UPF1	100	90.950	Octodon_degus
ENSACLG00000007181	upf1	100	93.188	ENSONIG00000012729	-	100	93.188	Oreochromis_niloticus
ENSACLG00000007181	upf1	100	98.557	ENSONIG00000010452	upf1	100	98.557	Oreochromis_niloticus
ENSACLG00000007181	upf1	100	90.459	ENSOANG00000004568	UPF1	100	90.018	Ornithorhynchus_anatinus
ENSACLG00000007181	upf1	100	92.760	ENSORLG00000008453	upf1	100	92.566	Oryzias_latipes
ENSACLG00000007181	upf1	100	92.676	ENSORLG00020014758	upf1	100	92.482	Oryzias_latipes_hni
ENSACLG00000007181	upf1	100	92.676	ENSORLG00015010165	upf1	100	92.482	Oryzias_latipes_hsok
ENSACLG00000007181	upf1	100	93.213	ENSOMEG00000003665	upf1	100	93.019	Oryzias_melastigma
ENSACLG00000007181	upf1	100	91.192	ENSOGAG00000012866	UPF1	100	90.844	Otolemur_garnettii
ENSACLG00000007181	upf1	96	89.459	ENSOARG00000010739	UPF1	100	88.919	Ovis_aries
ENSACLG00000007181	upf1	95	92.264	ENSPPAG00000043884	UPF1	96	91.800	Pan_paniscus
ENSACLG00000007181	upf1	100	90.396	ENSPPRG00000023470	UPF1	100	90.053	Panthera_pardus
ENSACLG00000007181	upf1	95	91.309	ENSPTIG00000010159	UPF1	99	90.840	Panthera_tigris_altaica
ENSACLG00000007181	upf1	100	90.861	ENSPTRG00000010721	UPF1	100	90.514	Pan_troglodytes
ENSACLG00000007181	upf1	100	90.861	ENSPANG00000008847	UPF1	100	90.514	Papio_anubis
ENSACLG00000007181	upf1	91	96.289	ENSPKIG00000006069	upf1	96	96.289	Paramormyrops_kingsleyae
ENSACLG00000007181	upf1	70	91.558	ENSPSIG00000009491	UPF1	100	91.503	Pelodiscus_sinensis
ENSACLG00000007181	upf1	100	93.370	ENSPMGG00000017327	upf1	100	93.654	Periophthalmus_magnuspinnatus
ENSACLG00000007181	upf1	100	90.442	ENSPEMG00000001085	Upf1	100	90.009	Peromyscus_maniculatus_bairdii
ENSACLG00000007181	upf1	100	87.173	ENSPMAG00000001206	upf1	100	87.173	Petromyzon_marinus
ENSACLG00000007181	upf1	100	91.719	ENSPCIG00000006156	UPF1	100	91.771	Phascolarctos_cinereus
ENSACLG00000007181	upf1	100	93.000	ENSPLAG00000016232	-	100	93.019	Poecilia_latipinna
ENSACLG00000007181	upf1	100	94.409	ENSPLAG00000018155	-	100	93.496	Poecilia_latipinna
ENSACLG00000007181	upf1	100	92.916	ENSPMEG00000016319	-	100	93.097	Poecilia_mexicana
ENSACLG00000007181	upf1	100	95.620	ENSPMEG00000011443	-	100	95.620	Poecilia_mexicana
ENSACLG00000007181	upf1	100	92.909	ENSPREG00000011247	-	100	93.091	Poecilia_reticulata
ENSACLG00000007181	upf1	100	94.239	ENSPREG00000009940	upf1	100	93.508	Poecilia_reticulata
ENSACLG00000007181	upf1	100	85.525	ENSPPYG00000009752	UPF1	100	84.474	Pongo_abelii
ENSACLG00000007181	upf1	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSACLG00000007181	upf1	100	90.877	ENSPCOG00000023813	UPF1	100	90.531	Propithecus_coquereli
ENSACLG00000007181	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSACLG00000007181	upf1	100	98.828	ENSPNYG00000003694	upf1	100	98.828	Pundamilia_nyererei
ENSACLG00000007181	upf1	100	93.188	ENSPNYG00000016731	-	100	93.188	Pundamilia_nyererei
ENSACLG00000007181	upf1	100	94.727	ENSPNAG00000025614	upf1	100	94.570	Pygocentrus_nattereri
ENSACLG00000007181	upf1	100	91.242	ENSRNOG00000020134	Upf1	100	90.804	Rattus_norvegicus
ENSACLG00000007181	upf1	95	89.962	ENSRBIG00000013894	UPF1	98	92.601	Rhinopithecus_bieti
ENSACLG00000007181	upf1	95	92.330	ENSRROG00000040935	UPF1	98	92.601	Rhinopithecus_roxellana
ENSACLG00000007181	upf1	73	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSACLG00000007181	upf1	95	92.322	ENSSBOG00000023632	UPF1	96	91.856	Saimiri_boliviensis_boliviensis
ENSACLG00000007181	upf1	95	92.628	ENSSHAG00000010499	UPF1	100	92.593	Sarcophilus_harrisii
ENSACLG00000007181	upf1	100	93.824	ENSSFOG00015021095	upf1	100	93.835	Scleropages_formosus
ENSACLG00000007181	upf1	100	95.691	ENSSMAG00000005055	upf1	100	95.691	Scophthalmus_maximus
ENSACLG00000007181	upf1	100	93.103	ENSSMAG00000021018	-	100	93.103	Scophthalmus_maximus
ENSACLG00000007181	upf1	100	93.285	ENSSDUG00000009629	-	100	93.285	Seriola_dumerili
ENSACLG00000007181	upf1	100	96.595	ENSSDUG00000013320	upf1	100	96.595	Seriola_dumerili
ENSACLG00000007181	upf1	100	97.468	ENSSLDG00000020868	upf1	100	97.468	Seriola_lalandi_dorsalis
ENSACLG00000007181	upf1	100	93.285	ENSSLDG00000006878	-	100	93.285	Seriola_lalandi_dorsalis
ENSACLG00000007181	upf1	100	91.741	ENSSPUG00000010538	UPF1	100	91.794	Sphenodon_punctatus
ENSACLG00000007181	upf1	100	93.364	ENSSPAG00000011521	-	100	93.364	Stegastes_partitus
ENSACLG00000007181	upf1	100	95.545	ENSSPAG00000000003	upf1	100	95.545	Stegastes_partitus
ENSACLG00000007181	upf1	100	91.436	ENSSSCG00000039301	UPF1	99	92.844	Sus_scrofa
ENSACLG00000007181	upf1	82	87.340	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSACLG00000007181	upf1	100	92.364	ENSTRUG00000005131	-	100	92.461	Takifugu_rubripes
ENSACLG00000007181	upf1	100	94.982	ENSTRUG00000000150	upf1	100	94.722	Takifugu_rubripes
ENSACLG00000007181	upf1	100	87.779	ENSTTRG00000011544	UPF1	100	87.344	Tursiops_truncatus
ENSACLG00000007181	upf1	100	91.281	ENSUAMG00000007093	UPF1	100	90.933	Ursus_americanus
ENSACLG00000007181	upf1	95	93.410	ENSUMAG00000006652	UPF1	99	93.196	Ursus_maritimus
ENSACLG00000007181	upf1	100	91.281	ENSVVUG00000007797	UPF1	100	90.933	Vulpes_vulpes
ENSACLG00000007181	upf1	100	78.841	ENSXETG00000013602	upf1	100	78.678	Xenopus_tropicalis
ENSACLG00000007181	upf1	94	93.204	ENSXCOG00000005764	-	99	93.224	Xiphophorus_couchianus
ENSACLG00000007181	upf1	97	94.340	ENSXCOG00000015275	-	96	93.962	Xiphophorus_couchianus
ENSACLG00000007181	upf1	100	93.006	ENSXMAG00000002540	-	100	93.188	Xiphophorus_maculatus
ENSACLG00000007181	upf1	100	94.343	ENSXMAG00000001703	-	100	93.978	Xiphophorus_maculatus