EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000007308 (Gene tree)
Gene ID: 113033487
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 8870 bases
Position: chr12:22289494-22298363
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000010703	SMN	PF06003.12	1.4e-113	1	1
ENSACLP00000010682	SMN	PF06003.12	1.3e-107	1	1
ENSACLP00000010695	SMN	PF06003.12	5.2e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000010955	-	1924	-	ENSACLP00000010703	290 (aa)	-	-
ENSACLT00000010947	-	2161	-	ENSACLP00000010695	300 (aa)	-	-
ENSACLT00000010935	-	2128	-	ENSACLP00000010682	289 (aa)	-	-

Gene Model

Click here to download ENSACLG00000007308's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000007308's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000007308	smn1	84	31.304	ENSACLG00000002833	-	75	48.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000007308	smn1	88	52.896	ENSG00000172062	SMN1	92	54.074	Homo_sapiens
ENSACLG00000007308	smn1	88	52.896	ENSG00000205571	SMN2	92	54.074	Homo_sapiens
ENSACLG00000007308	smn1	94	79.928	ENSAPOG00000011324	smn1	99	80.287	Acanthochromis_polyacanthus
ENSACLG00000007308	smn1	89	54.348	ENSAMEG00000003316	-	89	52.297	Ailuropoda_melanoleuca
ENSACLG00000007308	smn1	90	84.733	ENSACIG00000019772	-	99	84.733	Amphilophus_citrinellus
ENSACLG00000007308	smn1	58	85.799	ENSACIG00000007598	smn1	94	86.391	Amphilophus_citrinellus
ENSACLG00000007308	smn1	94	79.928	ENSAOCG00000024444	smn1	99	80.287	Amphiprion_ocellaris
ENSACLG00000007308	smn1	94	80.287	ENSAPEG00000016504	smn1	99	81.250	Amphiprion_percula
ENSACLG00000007308	smn1	94	82.971	ENSATEG00000002182	smn1	84	82.971	Anabas_testudineus
ENSACLG00000007308	smn1	66	48.259	ENSAPLG00000010912	-	96	45.918	Anas_platyrhynchos
ENSACLG00000007308	smn1	92	52.688	ENSACAG00000010017	-	96	51.613	Anolis_carolinensis
ENSACLG00000007308	smn1	90	53.025	ENSANAG00000032133	-	92	53.191	Aotus_nancymaae
ENSACLG00000007308	smn1	96	62.143	ENSAMXG00000013884	smn1	98	63.701	Astyanax_mexicanus
ENSACLG00000007308	smn1	97	49.498	ENSBTAG00000005743	SMN2	54	60.645	Bos_taurus
ENSACLG00000007308	smn1	88	54.440	ENSCJAG00000016290	-	92	52.857	Callithrix_jacchus
ENSACLG00000007308	smn1	88	53.759	ENSCAFG00000007812	SMN	93	51.273	Canis_familiaris
ENSACLG00000007308	smn1	89	53.333	ENSCAFG00020019229	-	86	51.273	Canis_lupus_dingo
ENSACLG00000007308	smn1	90	54.545	ENSCHIG00000015559	-	91	50.000	Capra_hircus
ENSACLG00000007308	smn1	90	54.044	ENSTSYG00000012058	-	92	51.515	Carlito_syrichta
ENSACLG00000007308	smn1	74	48.444	ENSCAPG00000011021	-	88	47.030	Cavia_aperea
ENSACLG00000007308	smn1	88	51.481	ENSCPOG00000036973	-	92	51.071	Cavia_porcellus
ENSACLG00000007308	smn1	89	51.986	ENSCPOG00000012328	-	93	51.773	Cavia_porcellus
ENSACLG00000007308	smn1	88	51.737	ENSCCAG00000018127	-	91	52.158	Cebus_capucinus
ENSACLG00000007308	smn1	88	55.212	ENSCATG00000037002	-	92	54.815	Cercocebus_atys
ENSACLG00000007308	smn1	88	51.515	ENSCLAG00000000284	-	89	52.000	Chinchilla_lanigera
ENSACLG00000007308	smn1	88	53.160	ENSCSAG00000015688	-	91	53.047	Chlorocebus_sabaeus
ENSACLG00000007308	smn1	60	83.333	ENSCHOG00000007346	-	100	49.407	Choloepus_hoffmanni
ENSACLG00000007308	smn1	91	54.745	ENSCPBG00000010968	-	97	54.023	Chrysemys_picta_bellii
ENSACLG00000007308	smn1	88	51.504	ENSCANG00000033324	-	90	49.438	Colobus_angolensis_palliatus
ENSACLG00000007308	smn1	88	54.651	ENSCANG00000038242	-	93	54.851	Colobus_angolensis_palliatus
ENSACLG00000007308	smn1	88	37.500	ENSCGRG00001016998	-	87	38.931	Cricetulus_griseus_chok1gshd
ENSACLG00000007308	smn1	88	53.101	ENSCGRG00001017959	-	93	47.653	Cricetulus_griseus_chok1gshd
ENSACLG00000007308	smn1	88	53.101	ENSCGRG00000007698	Smn1	93	47.653	Cricetulus_griseus_crigri
ENSACLG00000007308	smn1	94	64.685	ENSCSEG00000015227	smn1	98	64.158	Cynoglossus_semilaevis
ENSACLG00000007308	smn1	94	74.648	ENSCVAG00000007498	smn1	99	76.761	Cyprinodon_variegatus
ENSACLG00000007308	smn1	95	61.131	ENSDARG00000018494	smn1	98	56.738	Danio_rerio
ENSACLG00000007308	smn1	79	49.793	ENSDNOG00000007283	-	97	47.154	Dasypus_novemcinctus
ENSACLG00000007308	smn1	89	45.896	ENSDORG00000007082	Smn1	92	41.985	Dipodomys_ordii
ENSACLG00000007308	smn1	53	48.718	ENSETEG00000001406	-	75	48.148	Echinops_telfairi
ENSACLG00000007308	smn1	90	38.811	ENSEBUG00000011902	smn1	94	36.879	Eptatretus_burgeri
ENSACLG00000007308	smn1	85	47.104	ENSEASG00005018000	-	90	45.802	Equus_asinus_asinus
ENSACLG00000007308	smn1	89	50.545	ENSECAG00000015215	-	93	49.635	Equus_caballus
ENSACLG00000007308	smn1	85	53.696	ENSEEUG00000015777	-	100	51.711	Erinaceus_europaeus
ENSACLG00000007308	smn1	94	65.091	ENSELUG00000018067	smn1	99	64.875	Esox_lucius
ENSACLG00000007308	smn1	88	55.212	ENSFCAG00000028292	SMN	93	52.518	Felis_catus
ENSACLG00000007308	smn1	91	56.618	ENSFALG00000012320	-	95	54.135	Ficedula_albicollis
ENSACLG00000007308	smn1	88	50.187	ENSFDAG00000017683	-	92	46.429	Fukomys_damarensis
ENSACLG00000007308	smn1	91	79.182	ENSFHEG00000018508	smn1	99	78.731	Fundulus_heteroclitus
ENSACLG00000007308	smn1	92	66.667	ENSGMOG00000017279	smn1	92	67.170	Gadus_morhua
ENSACLG00000007308	smn1	90	50.370	ENSGALG00000002430	SMN	97	50.397	Gallus_gallus
ENSACLG00000007308	smn1	94	78.092	ENSGAFG00000009501	smn1	99	78.092	Gambusia_affinis
ENSACLG00000007308	smn1	94	78.136	ENSGACG00000010584	smn1	96	77.061	Gasterosteus_aculeatus
ENSACLG00000007308	smn1	93	36.598	ENSGAGG00000013639	-	89	35.821	Gopherus_agassizii
ENSACLG00000007308	smn1	91	55.390	ENSGAGG00000011374	-	94	55.390	Gopherus_agassizii
ENSACLG00000007308	smn1	88	52.896	ENSGGOG00000003872	-	93	53.876	Gorilla_gorilla
ENSACLG00000007308	smn1	53	63.924	ENSGGOG00000026704	-	81	58.564	Gorilla_gorilla
ENSACLG00000007308	smn1	100	98.276	ENSHBUG00000013987	smn1	100	98.276	Haplochromis_burtoni
ENSACLG00000007308	smn1	88	50.000	ENSHGLG00000001018	-	92	46.209	Heterocephalus_glaber_female
ENSACLG00000007308	smn1	88	49.064	ENSHGLG00000001905	-	94	47.080	Heterocephalus_glaber_female
ENSACLG00000007308	smn1	88	50.000	ENSHGLG00100011252	-	92	46.209	Heterocephalus_glaber_male
ENSACLG00000007308	smn1	88	49.064	ENSHGLG00100018676	-	96	47.761	Heterocephalus_glaber_male
ENSACLG00000007308	smn1	99	70.345	ENSHCOG00000017136	smn1	89	76.515	Hippocampus_comes
ENSACLG00000007308	smn1	98	60.339	ENSIPUG00000012580	smn1	86	59.075	Ictalurus_punctatus
ENSACLG00000007308	smn1	88	52.632	ENSSTOG00000012288	-	93	55.094	Ictidomys_tridecemlineatus
ENSACLG00000007308	smn1	57	47.305	ENSJJAG00000014853	-	86	48.810	Jaculus_jaculus
ENSACLG00000007308	smn1	94	77.580	ENSKMAG00000007239	smn1	99	79.182	Kryptolebias_marmoratus
ENSACLG00000007308	smn1	94	79.286	ENSLBEG00000022550	smn1	100	79.779	Labrus_bergylta
ENSACLG00000007308	smn1	92	33.784	ENSLACG00000009808	-	92	35.540	Latimeria_chalumnae
ENSACLG00000007308	smn1	92	53.506	ENSLOCG00000011339	smn1	95	56.667	Lepisosteus_oculatus
ENSACLG00000007308	smn1	92	31.159	ENSLOCG00000000801	-	81	30.451	Lepisosteus_oculatus
ENSACLG00000007308	smn1	90	50.000	ENSLAFG00000003425	-	88	51.119	Loxodonta_africana
ENSACLG00000007308	smn1	88	49.814	ENSMFAG00000008812	-	89	50.185	Macaca_fascicularis
ENSACLG00000007308	smn1	88	55.985	ENSMFAG00000031523	SMN1	95	53.137	Macaca_fascicularis
ENSACLG00000007308	smn1	88	55.985	ENSMMUG00000020214	SMN1	92	54.815	Macaca_mulatta
ENSACLG00000007308	smn1	88	49.071	ENSMMUG00000030594	-	89	48.014	Macaca_mulatta
ENSACLG00000007308	smn1	73	41.228	ENSMNEG00000036423	-	81	41.284	Macaca_nemestrina
ENSACLG00000007308	smn1	88	55.985	ENSMNEG00000035094	-	92	54.815	Macaca_nemestrina
ENSACLG00000007308	smn1	88	55.985	ENSMLEG00000041902	-	93	55.556	Mandrillus_leucophaeus
ENSACLG00000007308	smn1	99	77.740	ENSMAMG00000011034	smn1	99	79.643	Mastacembelus_armatus
ENSACLG00000007308	smn1	94	96.364	ENSMZEG00005013634	smn1	99	96.364	Maylandia_zebra
ENSACLG00000007308	smn1	66	50.777	ENSMGAG00000008889	-	95	46.354	Meleagris_gallopavo
ENSACLG00000007308	smn1	88	52.434	ENSMAUG00000010262	Smn1	90	51.866	Mesocricetus_auratus
ENSACLG00000007308	smn1	53	62.658	ENSMICG00000034708	-	71	62.658	Microcebus_murinus
ENSACLG00000007308	smn1	92	53.333	ENSMOCG00000017833	Smn1	93	49.624	Microtus_ochrogaster
ENSACLG00000007308	smn1	92	71.805	ENSMMOG00000005504	smn1	97	71.429	Mola_mola
ENSACLG00000007308	smn1	90	53.676	ENSMODG00000001436	-	92	49.635	Monodelphis_domestica
ENSACLG00000007308	smn1	94	80.634	ENSMALG00000008025	smn1	99	80.634	Monopterus_albus
ENSACLG00000007308	smn1	88	52.239	MGP_CAROLIEiJ_G0018836	Smn1	93	49.640	Mus_caroli
ENSACLG00000007308	smn1	88	51.866	ENSMUSG00000021645	Smn1	93	49.281	Mus_musculus
ENSACLG00000007308	smn1	88	53.232	MGP_PahariEiJ_G0015911	Smn1	90	52.632	Mus_pahari
ENSACLG00000007308	smn1	88	52.985	MGP_SPRETEiJ_G0019718	Smn1	93	49.281	Mus_spretus
ENSACLG00000007308	smn1	88	53.333	ENSMPUG00000014470	-	93	55.019	Mustela_putorius_furo
ENSACLG00000007308	smn1	89	50.000	ENSMLUG00000010603	-	50	62.179	Myotis_lucifugus
ENSACLG00000007308	smn1	88	52.453	ENSNGAG00000019833	Smn1	93	49.814	Nannospalax_galili
ENSACLG00000007308	smn1	94	94.245	ENSNBRG00000023000	smn1	99	94.245	Neolamprologus_brichardi
ENSACLG00000007308	smn1	88	52.788	ENSNLEG00000004454	-	92	54.074	Nomascus_leucogenys
ENSACLG00000007308	smn1	64	53.608	ENSMEUG00000011393	-	100	46.552	Notamacropus_eugenii
ENSACLG00000007308	smn1	85	52.107	ENSOPRG00000002015	-	100	51.724	Ochotona_princeps
ENSACLG00000007308	smn1	88	53.257	ENSODEG00000015976	-	92	52.190	Octodon_degus
ENSACLG00000007308	smn1	92	94.403	ENSONIG00000011799	smn1	98	94.182	Oreochromis_niloticus
ENSACLG00000007308	smn1	90	51.460	ENSOANG00000001626	-	94	51.119	Ornithorhynchus_anatinus
ENSACLG00000007308	smn1	90	50.534	ENSOCUG00000026649	-	92	49.462	Oryctolagus_cuniculus
ENSACLG00000007308	smn1	90	52.364	ENSOCUG00000017097	-	92	49.462	Oryctolagus_cuniculus
ENSACLG00000007308	smn1	90	42.279	ENSOCUG00000025183	-	90	41.606	Oryctolagus_cuniculus
ENSACLG00000007308	smn1	94	73.793	ENSORLG00000010552	smn1	99	76.678	Oryzias_latipes
ENSACLG00000007308	smn1	94	67.354	ENSORLG00020007936	smn1	98	70.070	Oryzias_latipes_hni
ENSACLG00000007308	smn1	94	75.618	ENSORLG00015022425	smn1	99	76.325	Oryzias_latipes_hsok
ENSACLG00000007308	smn1	94	76.678	ENSOMEG00000007824	smn1	99	77.385	Oryzias_melastigma
ENSACLG00000007308	smn1	88	47.566	ENSOGAG00000031414	-	92	44.792	Otolemur_garnettii
ENSACLG00000007308	smn1	90	51.460	ENSOARG00000005425	-	97	50.549	Ovis_aries
ENSACLG00000007308	smn1	88	52.896	ENSPPAG00000036640	-	92	54.074	Pan_paniscus
ENSACLG00000007308	smn1	88	55.212	ENSPPRG00000005575	-	93	52.518	Panthera_pardus
ENSACLG00000007308	smn1	88	55.212	ENSPTIG00000007745	-	93	52.688	Panthera_tigris_altaica
ENSACLG00000007308	smn1	88	52.896	ENSPTRG00000016955	-	92	53.480	Pan_troglodytes
ENSACLG00000007308	smn1	88	50.388	ENSPANG00000000253	-	88	51.111	Papio_anubis
ENSACLG00000007308	smn1	88	55.985	ENSPANG00000013601	-	91	53.047	Papio_anubis
ENSACLG00000007308	smn1	94	59.431	ENSPKIG00000011096	smn1	94	61.654	Paramormyrops_kingsleyae
ENSACLG00000007308	smn1	88	53.933	ENSPSIG00000014787	-	88	53.623	Pelodiscus_sinensis
ENSACLG00000007308	smn1	91	73.962	ENSPMGG00000012285	smn1	97	75.472	Periophthalmus_magnuspinnatus
ENSACLG00000007308	smn1	90	54.044	ENSPCIG00000025764	-	94	50.916	Phascolarctos_cinereus
ENSACLG00000007308	smn1	94	78.136	ENSPFOG00000007786	smn1	99	78.136	Poecilia_formosa
ENSACLG00000007308	smn1	94	78.495	ENSPLAG00000012071	smn1	99	78.495	Poecilia_latipinna
ENSACLG00000007308	smn1	94	78.136	ENSPMEG00000017085	smn1	99	78.136	Poecilia_mexicana
ENSACLG00000007308	smn1	94	77.778	ENSPREG00000005824	smn1	99	77.385	Poecilia_reticulata
ENSACLG00000007308	smn1	88	51.111	ENSPPYG00000015533	-	95	52.399	Pongo_abelii
ENSACLG00000007308	smn1	58	76.923	ENSPPYG00000019189	-	74	49.655	Pongo_abelii
ENSACLG00000007308	smn1	90	51.493	ENSPCAG00000004187	-	100	50.000	Procavia_capensis
ENSACLG00000007308	smn1	66	51.020	ENSPCOG00000022307	-	83	50.761	Propithecus_coquereli
ENSACLG00000007308	smn1	88	53.160	ENSPVAG00000005977	-	92	51.246	Pteropus_vampyrus
ENSACLG00000007308	smn1	94	94.245	ENSPNYG00000014148	smn1	99	94.245	Pundamilia_nyererei
ENSACLG00000007308	smn1	96	64.539	ENSPNAG00000014007	smn1	86	59.075	Pygocentrus_nattereri
ENSACLG00000007308	smn1	88	51.866	ENSRNOG00000018067	Smn1	93	48.014	Rattus_norvegicus
ENSACLG00000007308	smn1	88	54.651	ENSRBIG00000037052	-	91	53.047	Rhinopithecus_bieti
ENSACLG00000007308	smn1	92	49.104	ENSRBIG00000036775	-	93	49.455	Rhinopithecus_bieti
ENSACLG00000007308	smn1	88	54.651	ENSRROG00000039399	-	92	54.815	Rhinopithecus_roxellana
ENSACLG00000007308	smn1	88	53.125	ENSRROG00000031088	-	90	53.125	Rhinopithecus_roxellana
ENSACLG00000007308	smn1	60	54.802	ENSSBOG00000020112	-	52	60.667	Saimiri_boliviensis_boliviensis
ENSACLG00000007308	smn1	88	55.639	ENSSBOG00000011665	-	91	53.261	Saimiri_boliviensis_boliviensis
ENSACLG00000007308	smn1	90	53.704	ENSSHAG00000001499	-	95	51.538	Sarcophilus_harrisii
ENSACLG00000007308	smn1	92	59.341	ENSSFOG00015015507	smn1	97	54.448	Scleropages_formosus
ENSACLG00000007308	smn1	92	75.000	ENSSMAG00000007922	smn1	99	76.678	Scophthalmus_maximus
ENSACLG00000007308	smn1	94	82.857	ENSSDUG00000018533	smn1	99	82.857	Seriola_dumerili
ENSACLG00000007308	smn1	94	83.214	ENSSLDG00000021135	smn1	99	83.214	Seriola_lalandi_dorsalis
ENSACLG00000007308	smn1	92	56.940	ENSSPUG00000000373	-	95	55.515	Sphenodon_punctatus
ENSACLG00000007308	smn1	94	81.004	ENSSPAG00000004345	smn1	99	80.645	Stegastes_partitus
ENSACLG00000007308	smn1	89	40.075	ENSSSCG00000029127	-	70	71.875	Sus_scrofa
ENSACLG00000007308	smn1	88	53.532	ENSSSCG00000016970	-	92	53.430	Sus_scrofa
ENSACLG00000007308	smn1	88	52.941	ENSTGUG00000001548	-	95	49.621	Taeniopygia_guttata
ENSACLG00000007308	smn1	92	70.545	ENSTRUG00000000736	smn	98	69.818	Takifugu_rubripes
ENSACLG00000007308	smn1	92	66.548	ENSTNIG00000009892	smn1	98	66.548	Tetraodon_nigroviridis
ENSACLG00000007308	smn1	53	63.694	ENSTBEG00000002399	-	79	62.195	Tupaia_belangeri
ENSACLG00000007308	smn1	53	63.462	ENSTTRG00000005080	-	91	49.091	Tursiops_truncatus
ENSACLG00000007308	smn1	53	64.744	ENSUAMG00000024947	-	57	64.744	Ursus_americanus
ENSACLG00000007308	smn1	88	56.716	ENSUMAG00000007842	-	69	53.791	Ursus_maritimus
ENSACLG00000007308	smn1	58	81.481	ENSVPAG00000009887	-	61	86.957	Vicugna_pacos
ENSACLG00000007308	smn1	89	53.333	ENSVVUG00000006934	-	93	51.273	Vulpes_vulpes
ENSACLG00000007308	smn1	84	34.866	ENSXETG00000004912	-	82	57.627	Xenopus_tropicalis
ENSACLG00000007308	smn1	92	53.287	ENSXETG00000018189	smn2	94	50.345	Xenopus_tropicalis
ENSACLG00000007308	smn1	92	78.623	ENSXMAG00000001521	smn1	98	78.261	Xiphophorus_maculatus