EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000009033 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 16452 bases
Position: chr18:23849916-23866367
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000013365	ResIII	PF04851.15	6.8e-12	1	1
ENSACLP00000013486	ResIII	PF04851.15	3.2e-10	1	1
ENSACLP00000013365	DEAD	PF00270.29	1.2e-27	1	1
ENSACLP00000013486	DEAD	PF00270.29	2.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000013818	-	2466	-	ENSACLP00000013486	822 (aa)	-	-
ENSACLT00000013697	-	3144	-	ENSACLP00000013365	1047 (aa)	-	-

Gene Model

Click here to download ENSACLG00000009033's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000009033's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000009033	hfm1	77	31.981	ENSACLG00000006736	ascc3	67	32.258
ENSACLG00000009033	hfm1	87	31.202	ENSACLG00000011188	snrnp200	72	32.368

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000009033	hfm1	97	65.316	ENSG00000162669	HFM1	65	63.734	Homo_sapiens
ENSACLG00000009033	hfm1	100	82.360	ENSAPOG00000005304	hfm1	99	82.360	Acanthochromis_polyacanthus
ENSACLG00000009033	hfm1	96	65.108	ENSAMEG00000000432	HFM1	64	63.558	Ailuropoda_melanoleuca
ENSACLG00000009033	hfm1	98	84.185	ENSACIG00000021553	hfm1	95	84.185	Amphilophus_citrinellus
ENSACLG00000009033	hfm1	100	83.431	ENSAOCG00000022839	hfm1	99	83.431	Amphiprion_ocellaris
ENSACLG00000009033	hfm1	100	83.724	ENSAPEG00000014316	hfm1	99	83.724	Amphiprion_percula
ENSACLG00000009033	hfm1	96	82.992	ENSATEG00000019181	hfm1	93	72.710	Anabas_testudineus
ENSACLG00000009033	hfm1	97	65.114	ENSAPLG00000013639	HFM1	65	64.547	Anas_platyrhynchos
ENSACLG00000009033	hfm1	98	63.722	ENSANAG00000029513	HFM1	72	58.920	Aotus_nancymaae
ENSACLG00000009033	hfm1	96	73.197	ENSAMXG00000006108	hfm1	66	70.507	Astyanax_mexicanus
ENSACLG00000009033	hfm1	96	65.348	ENSBTAG00000020856	HFM1	70	60.314	Bos_taurus
ENSACLG00000009033	hfm1	98	64.387	ENSCJAG00000001843	HFM1	65	63.519	Callithrix_jacchus
ENSACLG00000009033	hfm1	96	65.186	ENSCAFG00000020187	HFM1	64	63.237	Canis_familiaris
ENSACLG00000009033	hfm1	97	65.476	ENSTSYG00000014250	HFM1	70	60.296	Carlito_syrichta
ENSACLG00000009033	hfm1	97	64.720	ENSCPOG00000007421	HFM1	66	63.558	Cavia_porcellus
ENSACLG00000009033	hfm1	98	64.033	ENSCCAG00000033206	HFM1	65	63.197	Cebus_capucinus
ENSACLG00000009033	hfm1	97	65.191	ENSCATG00000030987	HFM1	65	63.519	Cercocebus_atys
ENSACLG00000009033	hfm1	97	64.642	ENSCLAG00000005173	HFM1	72	56.325	Chinchilla_lanigera
ENSACLG00000009033	hfm1	80	50.838	ENSCSAVG00000005094	-	100	52.228	Ciona_savignyi
ENSACLG00000009033	hfm1	92	61.673	ENSCGRG00001016995	Hfm1	65	59.626	Cricetulus_griseus_chok1gshd
ENSACLG00000009033	hfm1	98	62.884	ENSCGRG00000017181	Hfm1	70	58.039	Cricetulus_griseus_crigri
ENSACLG00000009033	hfm1	97	76.251	ENSCSEG00000017659	hfm1	96	72.290	Cynoglossus_semilaevis
ENSACLG00000009033	hfm1	82	78.622	ENSCVAG00000005075	hfm1	86	80.450	Cyprinodon_variegatus
ENSACLG00000009033	hfm1	98	71.205	ENSDARG00000104288	hfm1	76	71.205	Danio_rerio
ENSACLG00000009033	hfm1	98	63.412	ENSDNOG00000004776	HFM1	62	62.971	Dasypus_novemcinctus
ENSACLG00000009033	hfm1	97	62.266	ENSDORG00000014661	Hfm1	65	61.263	Dipodomys_ordii
ENSACLG00000009033	hfm1	53	60.841	ENSEBUG00000006133	-	92	60.841	Eptatretus_burgeri
ENSACLG00000009033	hfm1	93	64.713	ENSEASG00005015424	HFM1	96	59.296	Equus_asinus_asinus
ENSACLG00000009033	hfm1	97	64.720	ENSECAG00000024039	HFM1	63	63.451	Equus_caballus
ENSACLG00000009033	hfm1	99	75.584	ENSELUG00000018944	hfm1	98	75.584	Esox_lucius
ENSACLG00000009033	hfm1	96	64.988	ENSFCAG00000029116	HFM1	69	59.647	Felis_catus
ENSACLG00000009033	hfm1	96	65.988	ENSFALG00000001781	HFM1	65	64.401	Ficedula_albicollis
ENSACLG00000009033	hfm1	97	64.839	ENSFDAG00000020816	HFM1	65	62.073	Fukomys_damarensis
ENSACLG00000009033	hfm1	95	71.814	ENSGMOG00000017436	hfm1	98	68.584	Gadus_morhua
ENSACLG00000009033	hfm1	99	78.331	ENSGAFG00000018093	hfm1	100	78.331	Gambusia_affinis
ENSACLG00000009033	hfm1	95	78.458	ENSGACG00000015686	hfm1	98	75.238	Gasterosteus_aculeatus
ENSACLG00000009033	hfm1	97	65.316	ENSGGOG00000038524	HFM1	65	63.627	Gorilla_gorilla
ENSACLG00000009033	hfm1	100	98.286	ENSHBUG00000007309	hfm1	100	98.286	Haplochromis_burtoni
ENSACLG00000009033	hfm1	99	80.098	ENSHCOG00000019632	hfm1	100	80.098	Hippocampus_comes
ENSACLG00000009033	hfm1	99	70.588	ENSIPUG00000017020	hfm1	98	70.588	Ictalurus_punctatus
ENSACLG00000009033	hfm1	97	63.647	ENSJJAG00000017198	Hfm1	66	61.910	Jaculus_jaculus
ENSACLG00000009033	hfm1	94	81.640	ENSKMAG00000002282	hfm1	91	78.579	Kryptolebias_marmoratus
ENSACLG00000009033	hfm1	100	84.848	ENSLBEG00000006759	hfm1	99	84.848	Labrus_bergylta
ENSACLG00000009033	hfm1	95	67.509	ENSLACG00000010698	HFM1	89	65.259	Latimeria_chalumnae
ENSACLG00000009033	hfm1	97	71.122	ENSLOCG00000004931	hfm1	86	68.332	Lepisosteus_oculatus
ENSACLG00000009033	hfm1	79	66.373	ENSLAFG00000015903	-	90	68.955	Loxodonta_africana
ENSACLG00000009033	hfm1	97	62.440	ENSMFAG00000003649	HFM1	65	61.087	Macaca_fascicularis
ENSACLG00000009033	hfm1	97	64.601	ENSMMUG00000006819	HFM1	65	63.090	Macaca_mulatta
ENSACLG00000009033	hfm1	100	85.455	ENSMAMG00000004623	hfm1	99	85.455	Mastacembelus_armatus
ENSACLG00000009033	hfm1	100	99.878	ENSMZEG00005004679	hfm1	100	99.878	Maylandia_zebra
ENSACLG00000009033	hfm1	88	64.398	ENSMGAG00000008437	HFM1	95	67.192	Meleagris_gallopavo
ENSACLG00000009033	hfm1	97	63.723	ENSMAUG00000018858	Hfm1	65	62.084	Mesocricetus_auratus
ENSACLG00000009033	hfm1	97	64.405	ENSMICG00000037935	HFM1	65	63.237	Microcebus_murinus
ENSACLG00000009033	hfm1	97	64.081	ENSMOCG00000014812	Hfm1	65	62.191	Microtus_ochrogaster
ENSACLG00000009033	hfm1	100	82.634	ENSMMOG00000006148	hfm1	99	82.634	Mola_mola
ENSACLG00000009033	hfm1	100	83.688	ENSMALG00000002401	hfm1	99	83.688	Monopterus_albus
ENSACLG00000009033	hfm1	88	73.504	MGP_CAROLIEiJ_G0027496	Hfm1	60	73.504	Mus_caroli
ENSACLG00000009033	hfm1	97	63.365	ENSMUSG00000043410	Hfm1	65	61.522	Mus_musculus
ENSACLG00000009033	hfm1	97	63.604	MGP_PahariEiJ_G0017268	Hfm1	70	58.481	Mus_pahari
ENSACLG00000009033	hfm1	97	63.766	MGP_SPRETEiJ_G0028495	Hfm1	70	58.777	Mus_spretus
ENSACLG00000009033	hfm1	97	64.227	ENSMPUG00000004594	HFM1	63	63.316	Mustela_putorius_furo
ENSACLG00000009033	hfm1	97	64.345	ENSMLUG00000010200	HFM1	64	63.305	Myotis_lucifugus
ENSACLG00000009033	hfm1	100	96.252	ENSNBRG00000002910	hfm1	100	96.252	Neolamprologus_brichardi
ENSACLG00000009033	hfm1	97	63.842	ENSNLEG00000010285	HFM1	62	62.822	Nomascus_leucogenys
ENSACLG00000009033	hfm1	87	65.772	ENSMEUG00000015788	HFM1	59	58.883	Notamacropus_eugenii
ENSACLG00000009033	hfm1	97	59.952	ENSOPRG00000013916	HFM1	58	61.138	Ochotona_princeps
ENSACLG00000009033	hfm1	98	91.924	ENSONIG00000010590	hfm1	97	84.216	Oreochromis_niloticus
ENSACLG00000009033	hfm1	94	82.420	ENSORLG00000026844	hfm1	99	82.420	Oryzias_latipes
ENSACLG00000009033	hfm1	98	69.664	ENSORLG00020002951	hfm1	74	68.817	Oryzias_latipes_hni
ENSACLG00000009033	hfm1	98	78.741	ENSOMEG00000016474	hfm1	65	76.609	Oryzias_melastigma
ENSACLG00000009033	hfm1	97	64.994	ENSOGAG00000032369	HFM1	76	63.597	Otolemur_garnettii
ENSACLG00000009033	hfm1	97	65.036	ENSOARG00000015812	HFM1	70	60.039	Ovis_aries
ENSACLG00000009033	hfm1	97	65.554	ENSPPAG00000024582	HFM1	70	63.948	Pan_paniscus
ENSACLG00000009033	hfm1	96	64.988	ENSPPRG00000003270	HFM1	69	59.685	Panthera_pardus
ENSACLG00000009033	hfm1	96	64.988	ENSPTIG00000018881	HFM1	69	59.784	Panthera_tigris_altaica
ENSACLG00000009033	hfm1	97	65.435	ENSPTRG00000000948	HFM1	65	63.841	Pan_troglodytes
ENSACLG00000009033	hfm1	97	64.833	ENSPANG00000009838	HFM1	65	63.197	Papio_anubis
ENSACLG00000009033	hfm1	99	71.531	ENSPKIG00000003810	hfm1	99	71.531	Paramormyrops_kingsleyae
ENSACLG00000009033	hfm1	95	80.051	ENSPMGG00000011059	hfm1	99	80.051	Periophthalmus_magnuspinnatus
ENSACLG00000009033	hfm1	97	63.962	ENSPEMG00000022852	Hfm1	65	61.976	Peromyscus_maniculatus_bairdii
ENSACLG00000009033	hfm1	96	65.191	ENSPCIG00000014233	HFM1	63	63.394	Phascolarctos_cinereus
ENSACLG00000009033	hfm1	95	79.854	ENSPFOG00000017194	hfm1	99	72.952	Poecilia_formosa
ENSACLG00000009033	hfm1	96	79.565	ENSPLAG00000000571	hfm1	94	73.644	Poecilia_latipinna
ENSACLG00000009033	hfm1	96	79.686	ENSPMEG00000019475	hfm1	95	74.071	Poecilia_mexicana
ENSACLG00000009033	hfm1	99	78.165	ENSPREG00000007803	hfm1	100	78.165	Poecilia_reticulata
ENSACLG00000009033	hfm1	97	65.394	ENSPPYG00000001163	HFM1	70	60.000	Pongo_abelii
ENSACLG00000009033	hfm1	98	59.953	ENSPVAG00000009713	HFM1	66	57.479	Pteropus_vampyrus
ENSACLG00000009033	hfm1	100	99.514	ENSPNYG00000001795	hfm1	100	99.514	Pundamilia_nyererei
ENSACLG00000009033	hfm1	98	74.817	ENSPNAG00000010865	hfm1	84	74.817	Pygocentrus_nattereri
ENSACLG00000009033	hfm1	97	63.647	ENSRNOG00000023299	Hfm1	70	58.039	Rattus_norvegicus
ENSACLG00000009033	hfm1	97	65.191	ENSRROG00000045569	HFM1	70	59.901	Rhinopithecus_roxellana
ENSACLG00000009033	hfm1	97	64.875	ENSSBOG00000027456	HFM1	66	63.412	Saimiri_boliviensis_boliviensis
ENSACLG00000009033	hfm1	71	62.975	ENSSHAG00000014616	-	72	62.975	Sarcophilus_harrisii
ENSACLG00000009033	hfm1	97	71.938	ENSSFOG00015020129	hfm1	63	68.349	Scleropages_formosus
ENSACLG00000009033	hfm1	96	82.289	ENSSMAG00000006907	hfm1	88	81.514	Scophthalmus_maximus
ENSACLG00000009033	hfm1	100	81.818	ENSSDUG00000011424	hfm1	99	81.818	Seriola_dumerili
ENSACLG00000009033	hfm1	100	81.013	ENSSLDG00000016386	hfm1	99	81.013	Seriola_lalandi_dorsalis
ENSACLG00000009033	hfm1	100	82.517	ENSSPAG00000001023	hfm1	99	82.517	Stegastes_partitus
ENSACLG00000009033	hfm1	97	64.958	ENSSSCG00000006912	HFM1	68	63.412	Sus_scrofa
ENSACLG00000009033	hfm1	95	65.939	ENSTGUG00000006172	HFM1	98	63.966	Taeniopygia_guttata
ENSACLG00000009033	hfm1	56	79.657	ENSTNIG00000006962	hfm1	97	80.255	Tetraodon_nigroviridis
ENSACLG00000009033	hfm1	97	64.362	ENSTTRG00000013933	HFM1	71	59.980	Tursiops_truncatus
ENSACLG00000009033	hfm1	96	62.710	ENSVPAG00000011331	HFM1	70	57.579	Vicugna_pacos
ENSACLG00000009033	hfm1	94	64.480	ENSVVUG00000020760	HFM1	88	63.718	Vulpes_vulpes
ENSACLG00000009033	hfm1	99	77.842	ENSXMAG00000004178	hfm1	100	77.727	Xiphophorus_maculatus