EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000009311 (Gene tree)
Gene ID: 113032704
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 20543 bases
Position: chr11:32947400-32967942
Accession: 113032704
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000013661	EST1	PF10374.9	4.4e-24	1	1
ENSACLP00000013665	EST1	PF10374.9	5e-24	1	1
ENSACLP00000013689	EST1	PF10374.9	5.1e-24	1	1
ENSACLP00000013661	EST1_DNA_bind	PF10373.9	9.1e-41	1	1
ENSACLP00000013665	EST1_DNA_bind	PF10373.9	1.1e-40	1	1
ENSACLP00000013689	EST1_DNA_bind	PF10373.9	1.1e-40	1	1
ENSACLP00000013661	PIN_4	PF13638.6	4.2e-07	1	1
ENSACLP00000013665	PIN_4	PF13638.6	5e-07	1	1
ENSACLP00000013689	PIN_4	PF13638.6	5.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000013995	-	3033	-	ENSACLP00000013661	1010 (aa)	-	-
ENSACLT00000013999	-	3372	-	ENSACLP00000013665	1123 (aa)	XP_026041529	UPI000E41BF30
ENSACLT00000014022	-	3408	-	ENSACLP00000013689	1135 (aa)	-	-

Gene Model

Click here to download ENSACLG00000009311's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000009311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000009311	smg5	99	66.121	ENSG00000198952	SMG5	99	64.587	Homo_sapiens
ENSACLG00000009311	smg5	100	91.424	ENSAPOG00000019690	smg5	100	91.343	Acanthochromis_polyacanthus
ENSACLG00000009311	smg5	98	63.681	ENSAMEG00000014458	SMG5	100	63.245	Ailuropoda_melanoleuca
ENSACLG00000009311	smg5	100	92.733	ENSACIG00000001353	smg5	100	92.636	Amphilophus_citrinellus
ENSACLG00000009311	smg5	100	91.667	ENSAOCG00000019483	smg5	100	92.021	Amphiprion_ocellaris
ENSACLG00000009311	smg5	100	91.401	ENSAPEG00000022949	smg5	100	92.021	Amphiprion_percula
ENSACLG00000009311	smg5	100	89.814	ENSATEG00000005348	smg5	100	88.830	Anabas_testudineus
ENSACLG00000009311	smg5	98	65.994	ENSAPLG00000010263	SMG5	100	64.860	Anas_platyrhynchos
ENSACLG00000009311	smg5	99	66.442	ENSANAG00000032899	SMG5	99	65.089	Aotus_nancymaae
ENSACLG00000009311	smg5	100	79.041	ENSAMXG00000024616	smg5	100	78.723	Astyanax_mexicanus
ENSACLG00000009311	smg5	99	39.746	ENSBTAG00000021747	-	92	49.515	Bos_taurus
ENSACLG00000009311	smg5	99	66.218	ENSBTAG00000009435	SMG5	99	64.683	Bos_taurus
ENSACLG00000009311	smg5	99	66.442	ENSCJAG00000005684	SMG5	99	64.587	Callithrix_jacchus
ENSACLG00000009311	smg5	99	65.141	ENSCAFG00000016839	SMG5	99	64.888	Canis_familiaris
ENSACLG00000009311	smg5	99	65.141	ENSCAFG00020006061	SMG5	99	64.888	Canis_lupus_dingo
ENSACLG00000009311	smg5	99	66.314	ENSCHIG00000007709	SMG5	99	64.779	Capra_hircus
ENSACLG00000009311	smg5	99	39.823	ENSCHIG00000006323	-	92	50.000	Capra_hircus
ENSACLG00000009311	smg5	99	66.667	ENSTSYG00000004099	SMG5	99	64.621	Carlito_syrichta
ENSACLG00000009311	smg5	94	49.949	ENSCAPG00000003631	SMG5	100	50.000	Cavia_aperea
ENSACLG00000009311	smg5	99	65.514	ENSCPOG00000015696	SMG5	99	64.847	Cavia_porcellus
ENSACLG00000009311	smg5	99	66.025	ENSCCAG00000027409	SMG5	99	64.892	Cebus_capucinus
ENSACLG00000009311	smg5	99	66.314	ENSCATG00000030539	SMG5	99	64.683	Cercocebus_atys
ENSACLG00000009311	smg5	99	65.226	ENSCLAG00000003983	SMG5	99	64.559	Chinchilla_lanigera
ENSACLG00000009311	smg5	99	66.314	ENSCSAG00000002120	SMG5	99	64.683	Chlorocebus_sabaeus
ENSACLG00000009311	smg5	53	75.812	ENSCHOG00000008741	-	56	75.812	Choloepus_hoffmanni
ENSACLG00000009311	smg5	93	66.030	ENSCPBG00000025848	SMG5	100	65.196	Chrysemys_picta_bellii
ENSACLG00000009311	smg5	93	33.129	ENSCING00000008706	-	90	37.811	Ciona_intestinalis
ENSACLG00000009311	smg5	99	63.820	ENSCANG00000029208	SMG5	99	62.201	Colobus_angolensis_palliatus
ENSACLG00000009311	smg5	99	66.377	ENSCGRG00001006336	Smg5	99	64.768	Cricetulus_griseus_chok1gshd
ENSACLG00000009311	smg5	98	66.372	ENSCGRG00000005111	Smg5	100	64.602	Cricetulus_griseus_crigri
ENSACLG00000009311	smg5	100	85.372	ENSCSEG00000014220	smg5	100	84.588	Cynoglossus_semilaevis
ENSACLG00000009311	smg5	99	80.373	ENSCVAG00000000529	smg5	99	80.079	Cyprinodon_variegatus
ENSACLG00000009311	smg5	100	77.630	ENSDARG00000041481	smg5	100	77.160	Danio_rerio
ENSACLG00000009311	smg5	92	32.735	ENSDNOG00000039862	-	85	38.736	Dasypus_novemcinctus
ENSACLG00000009311	smg5	99	63.102	ENSDNOG00000000051	SMG5	99	61.969	Dasypus_novemcinctus
ENSACLG00000009311	smg5	99	66.411	ENSDORG00000010382	Smg5	99	64.525	Dipodomys_ordii
ENSACLG00000009311	smg5	54	32.484	FBgn0019890	Smg5	63	32.484	Drosophila_melanogaster
ENSACLG00000009311	smg5	76	85.437	ENSETEG00000010336	SMG5	84	85.437	Echinops_telfairi
ENSACLG00000009311	smg5	91	46.561	ENSEBUG00000003739	smg5	99	46.660	Eptatretus_burgeri
ENSACLG00000009311	smg5	99	66.603	ENSEASG00005019122	SMG5	99	65.251	Equus_asinus_asinus
ENSACLG00000009311	smg5	99	66.538	ENSECAG00000001389	SMG5	99	65.154	Equus_caballus
ENSACLG00000009311	smg5	73	78.814	ENSEEUG00000012690	SMG5	75	77.465	Erinaceus_europaeus
ENSACLG00000009311	smg5	99	81.924	ENSELUG00000012585	smg5	100	80.531	Esox_lucius
ENSACLG00000009311	smg5	99	64.981	ENSFCAG00000011783	SMG5	99	64.626	Felis_catus
ENSACLG00000009311	smg5	58	68.874	ENSFALG00000001166	-	96	66.889	Ficedula_albicollis
ENSACLG00000009311	smg5	98	65.157	ENSFDAG00000017388	SMG5	100	64.090	Fukomys_damarensis
ENSACLG00000009311	smg5	86	90.794	ENSFHEG00000013939	smg5	95	90.794	Fundulus_heteroclitus
ENSACLG00000009311	smg5	100	78.253	ENSGMOG00000007310	smg5	100	78.378	Gadus_morhua
ENSACLG00000009311	smg5	99	65.935	ENSGALG00000029918	-	99	64.939	Gallus_gallus
ENSACLG00000009311	smg5	93	89.457	ENSGAFG00000021691	smg5	99	89.457	Gambusia_affinis
ENSACLG00000009311	smg5	100	85.790	ENSGACG00000013142	smg5	100	85.084	Gasterosteus_aculeatus
ENSACLG00000009311	smg5	100	66.164	ENSGAGG00000016131	SMG5	99	65.108	Gopherus_agassizii
ENSACLG00000009311	smg5	99	66.442	ENSGGOG00000010932	SMG5	99	64.395	Gorilla_gorilla
ENSACLG00000009311	smg5	100	99.467	ENSHBUG00000008654	smg5	100	99.467	Haplochromis_burtoni
ENSACLG00000009311	smg5	99	64.836	ENSHGLG00000019152	SMG5	99	64.080	Heterocephalus_glaber_female
ENSACLG00000009311	smg5	90	65.561	ENSHGLG00100015948	SMG5	99	64.718	Heterocephalus_glaber_male
ENSACLG00000009311	smg5	88	83.373	ENSHCOG00000010229	smg5	94	83.133	Hippocampus_comes
ENSACLG00000009311	smg5	100	77.329	ENSIPUG00000006624	Smg5	100	77.277	Ictalurus_punctatus
ENSACLG00000009311	smg5	99	65.929	ENSSTOG00000001780	SMG5	99	64.909	Ictidomys_tridecemlineatus
ENSACLG00000009311	smg5	99	65.547	ENSJJAG00000022763	Smg5	99	64.880	Jaculus_jaculus
ENSACLG00000009311	smg5	100	88.475	ENSKMAG00000014586	smg5	100	89.283	Kryptolebias_marmoratus
ENSACLG00000009311	smg5	100	88.997	ENSLBEG00000002145	smg5	100	89.086	Labrus_bergylta
ENSACLG00000009311	smg5	99	59.546	ENSLACG00000010521	SMG5	99	59.130	Latimeria_chalumnae
ENSACLG00000009311	smg5	96	85.012	ENSLOCG00000008380	smg5	87	85.012	Lepisosteus_oculatus
ENSACLG00000009311	smg5	99	65.029	ENSLAFG00000006241	SMG5	99	64.644	Loxodonta_africana
ENSACLG00000009311	smg5	99	66.314	ENSMFAG00000045357	SMG5	99	64.683	Macaca_fascicularis
ENSACLG00000009311	smg5	92	78.588	ENSMMUG00000000090	SMG5	99	65.247	Macaca_mulatta
ENSACLG00000009311	smg5	99	66.218	ENSMNEG00000044425	SMG5	99	64.587	Macaca_nemestrina
ENSACLG00000009311	smg5	99	60.786	ENSMLEG00000041192	SMG5	99	59.847	Mandrillus_leucophaeus
ENSACLG00000009311	smg5	100	88.397	ENSMAMG00000010683	smg5	100	88.308	Mastacembelus_armatus
ENSACLG00000009311	smg5	100	93.255	ENSMZEG00005015815	smg5	100	93.255	Maylandia_zebra
ENSACLG00000009311	smg5	62	94.237	ENSMZEG00005016543	smg5	100	94.237	Maylandia_zebra
ENSACLG00000009311	smg5	57	40.000	ENSMAUG00000000043	-	71	49.136	Mesocricetus_auratus
ENSACLG00000009311	smg5	99	65.990	ENSMAUG00000010381	Smg5	99	64.865	Mesocricetus_auratus
ENSACLG00000009311	smg5	99	66.345	ENSMICG00000002257	SMG5	99	64.581	Microcebus_murinus
ENSACLG00000009311	smg5	99	65.125	ENSMOCG00000016590	Smg5	99	64.224	Microtus_ochrogaster
ENSACLG00000009311	smg5	100	84.527	ENSMMOG00000017199	smg5	100	84.969	Mola_mola
ENSACLG00000009311	smg5	79	35.062	ENSMODG00000004532	-	89	34.411	Monodelphis_domestica
ENSACLG00000009311	smg5	75	33.962	ENSMODG00000004735	-	86	33.962	Monodelphis_domestica
ENSACLG00000009311	smg5	87	65.862	ENSMODG00000016901	SMG5	98	65.137	Monodelphis_domestica
ENSACLG00000009311	smg5	97	30.677	ENSMODG00000004511	-	79	34.699	Monodelphis_domestica
ENSACLG00000009311	smg5	77	33.590	ENSMODG00000010675	-	88	33.846	Monodelphis_domestica
ENSACLG00000009311	smg5	100	87.855	ENSMALG00000010375	smg5	100	87.411	Monopterus_albus
ENSACLG00000009311	smg5	99	66.409	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSACLG00000009311	smg5	99	66.602	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSACLG00000009311	smg5	99	66.763	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSACLG00000009311	smg5	99	66.506	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSACLG00000009311	smg5	93	64.330	ENSMPUG00000004546	SMG5	100	63.460	Mustela_putorius_furo
ENSACLG00000009311	smg5	99	66.218	ENSMLUG00000008518	SMG5	99	65.448	Myotis_lucifugus
ENSACLG00000009311	smg5	99	65.957	ENSNGAG00000020706	Smg5	99	64.740	Nannospalax_galili
ENSACLG00000009311	smg5	78	49.383	ENSNGAG00000012101	-	92	48.655	Nannospalax_galili
ENSACLG00000009311	smg5	97	89.889	ENSNBRG00000004332	smg5	98	89.484	Neolamprologus_brichardi
ENSACLG00000009311	smg5	99	66.218	ENSNLEG00000012439	SMG5	99	64.683	Nomascus_leucogenys
ENSACLG00000009311	smg5	99	64.423	ENSMEUG00000012834	SMG5	99	63.820	Notamacropus_eugenii
ENSACLG00000009311	smg5	99	65.833	ENSOPRG00000009152	SMG5	99	65.067	Ochotona_princeps
ENSACLG00000009311	smg5	99	65.222	ENSODEG00000012237	SMG5	99	65.833	Octodon_degus
ENSACLG00000009311	smg5	100	97.163	ENSONIG00000008632	smg5	100	97.163	Oreochromis_niloticus
ENSACLG00000009311	smg5	98	65.782	ENSOCUG00000012886	SMG5	100	64.677	Oryctolagus_cuniculus
ENSACLG00000009311	smg5	89	36.159	ENSOCUG00000023338	-	93	43.810	Oryctolagus_cuniculus
ENSACLG00000009311	smg5	100	85.053	ENSORLG00000016239	smg5	100	85.702	Oryzias_latipes
ENSACLG00000009311	smg5	100	85.053	ENSORLG00020013127	smg5	100	85.689	Oryzias_latipes_hni
ENSACLG00000009311	smg5	100	85.053	ENSORLG00015019014	smg5	100	85.511	Oryzias_latipes_hsok
ENSACLG00000009311	smg5	84	84.428	ENSOMEG00000021330	smg5	93	85.539	Oryzias_melastigma
ENSACLG00000009311	smg5	99	64.928	ENSOGAG00000004966	SMG5	99	64.569	Otolemur_garnettii
ENSACLG00000009311	smg5	99	39.805	ENSOARG00000011963	-	92	50.243	Ovis_aries
ENSACLG00000009311	smg5	99	65.992	ENSOARG00000005778	SMG5	93	75.621	Ovis_aries
ENSACLG00000009311	smg5	99	66.025	ENSPPAG00000011996	SMG5	99	64.491	Pan_paniscus
ENSACLG00000009311	smg5	91	78.465	ENSPPRG00000011901	SMG5	100	64.356	Panthera_pardus
ENSACLG00000009311	smg5	90	76.179	ENSPTIG00000007892	SMG5	98	61.359	Panthera_tigris_altaica
ENSACLG00000009311	smg5	99	66.025	ENSPTRG00000049282	-	99	64.491	Pan_troglodytes
ENSACLG00000009311	smg5	99	66.025	ENSPTRG00000023925	SMG5	99	64.491	Pan_troglodytes
ENSACLG00000009311	smg5	99	66.314	ENSPANG00000011201	SMG5	99	64.683	Papio_anubis
ENSACLG00000009311	smg5	100	76.414	ENSPKIG00000009402	smg5	100	75.839	Paramormyrops_kingsleyae
ENSACLG00000009311	smg5	98	67.343	ENSPSIG00000015198	SMG5	100	66.115	Pelodiscus_sinensis
ENSACLG00000009311	smg5	100	72.291	ENSPMGG00000010465	smg5	100	71.454	Periophthalmus_magnuspinnatus
ENSACLG00000009311	smg5	99	66.570	ENSPEMG00000001819	Smg5	99	64.553	Peromyscus_maniculatus_bairdii
ENSACLG00000009311	smg5	59	40.783	ENSPEMG00000010022	-	68	50.000	Peromyscus_maniculatus_bairdii
ENSACLG00000009311	smg5	99	49.473	ENSPMAG00000000410	smg5	99	49.384	Petromyzon_marinus
ENSACLG00000009311	smg5	99	65.601	ENSPCIG00000018938	SMG5	99	65.096	Phascolarctos_cinereus
ENSACLG00000009311	smg5	100	87.655	ENSPFOG00000010191	smg5	100	87.211	Poecilia_formosa
ENSACLG00000009311	smg5	100	87.744	ENSPLAG00000009332	smg5	100	87.478	Poecilia_latipinna
ENSACLG00000009311	smg5	100	87.744	ENSPMEG00000014105	smg5	100	87.300	Poecilia_mexicana
ENSACLG00000009311	smg5	100	88.089	ENSPREG00000017713	smg5	100	87.922	Poecilia_reticulata
ENSACLG00000009311	smg5	99	66.121	ENSPPYG00000000723	SMG5	99	64.587	Pongo_abelii
ENSACLG00000009311	smg5	74	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSACLG00000009311	smg5	99	66.635	ENSPCOG00000004741	SMG5	99	65.150	Propithecus_coquereli
ENSACLG00000009311	smg5	99	58.784	ENSPVAG00000016748	SMG5	99	58.784	Pteropus_vampyrus
ENSACLG00000009311	smg5	100	99.026	ENSPNYG00000013397	smg5	100	99.026	Pundamilia_nyererei
ENSACLG00000009311	smg5	100	78.044	ENSPNAG00000028363	smg5	100	77.045	Pygocentrus_nattereri
ENSACLG00000009311	smg5	99	66.635	ENSRNOG00000019590	Smg5	99	64.928	Rattus_norvegicus
ENSACLG00000009311	smg5	99	66.314	ENSRBIG00000027428	SMG5	99	64.683	Rhinopithecus_bieti
ENSACLG00000009311	smg5	99	66.218	ENSRROG00000030035	SMG5	99	64.587	Rhinopithecus_roxellana
ENSACLG00000009311	smg5	99	66.218	ENSSBOG00000033339	SMG5	99	64.683	Saimiri_boliviensis_boliviensis
ENSACLG00000009311	smg5	99	32.079	ENSSHAG00000009572	-	79	41.076	Sarcophilus_harrisii
ENSACLG00000009311	smg5	77	36.317	ENSSHAG00000000561	-	88	36.061	Sarcophilus_harrisii
ENSACLG00000009311	smg5	98	64.746	ENSSHAG00000014163	SMG5	100	63.973	Sarcophilus_harrisii
ENSACLG00000009311	smg5	56	36.061	ENSSHAG00000000935	-	81	36.061	Sarcophilus_harrisii
ENSACLG00000009311	smg5	100	79.324	ENSSFOG00015024175	smg5	100	78.551	Scleropages_formosus
ENSACLG00000009311	smg5	100	89.096	ENSSMAG00000013059	smg5	100	89.548	Scophthalmus_maximus
ENSACLG00000009311	smg5	100	90.829	ENSSDUG00000007122	smg5	100	90.220	Seriola_dumerili
ENSACLG00000009311	smg5	100	90.265	ENSSLDG00000011418	smg5	100	90.805	Seriola_lalandi_dorsalis
ENSACLG00000009311	smg5	85	70.863	ENSSARG00000012484	SMG5	94	70.863	Sorex_araneus
ENSACLG00000009311	smg5	93	65.496	ENSSPUG00000002260	SMG5	100	65.161	Sphenodon_punctatus
ENSACLG00000009311	smg5	100	91.166	ENSSPAG00000014266	smg5	100	91.086	Stegastes_partitus
ENSACLG00000009311	smg5	99	52.362	ENSSSCG00000039308	-	99	51.731	Sus_scrofa
ENSACLG00000009311	smg5	99	66.314	ENSSSCG00000006490	-	100	64.645	Sus_scrofa
ENSACLG00000009311	smg5	99	67.977	ENSTGUG00000003748	-	99	66.635	Taeniopygia_guttata
ENSACLG00000009311	smg5	100	79.718	ENSTRUG00000012580	smg5	100	79.189	Takifugu_rubripes
ENSACLG00000009311	smg5	99	81.071	ENSTNIG00000010303	smg5	99	80.784	Tetraodon_nigroviridis
ENSACLG00000009311	smg5	58	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSACLG00000009311	smg5	99	61.716	ENSTTRG00000001401	SMG5	99	60.907	Tursiops_truncatus
ENSACLG00000009311	smg5	92	76.667	ENSUAMG00000013721	SMG5	99	64.093	Ursus_americanus
ENSACLG00000009311	smg5	91	74.815	ENSUMAG00000018041	SMG5	95	72.494	Ursus_maritimus
ENSACLG00000009311	smg5	88	78.882	ENSVPAG00000009446	SMG5	99	57.002	Vicugna_pacos
ENSACLG00000009311	smg5	99	65.634	ENSVVUG00000005887	SMG5	99	64.981	Vulpes_vulpes
ENSACLG00000009311	smg5	76	58.924	ENSXETG00000033791	SMG5	99	58.313	Xenopus_tropicalis
ENSACLG00000009311	smg5	92	91.892	ENSXCOG00000004379	smg5	99	92.857	Xiphophorus_couchianus
ENSACLG00000009311	smg5	100	87.022	ENSXMAG00000013499	smg5	100	86.945	Xiphophorus_maculatus