EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSACLG00000009399 (Gene tree)
Gene ID
113031426
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Astatotilapia_calliptera
Status
putative
Strand
Plus strand
Length
7106 bases
Position
chr11:5715046-5722151
Accession
113031426
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSACLP00000013815PABPPF00658.185.7e-3211
ENSACLP00000013789PABPPF00658.188.3e-3211
ENSACLP00000013815RRM_5PF13893.62.5e-0812
ENSACLP00000013815RRM_5PF13893.62.5e-0822
ENSACLP00000013789RRM_5PF13893.64.5e-0812
ENSACLP00000013789RRM_5PF13893.64.5e-0822
ENSACLP00000013789RRM_1PF00076.222.4e-9314
ENSACLP00000013789RRM_1PF00076.222.4e-9324
ENSACLP00000013789RRM_1PF00076.222.4e-9334
ENSACLP00000013789RRM_1PF00076.222.4e-9344
ENSACLP00000013815RRM_1PF00076.226.2e-8714
ENSACLP00000013815RRM_1PF00076.226.2e-8724
ENSACLP00000013815RRM_1PF00076.226.2e-8734
ENSACLP00000013815RRM_1PF00076.226.2e-8744
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSACLT00000014149-1554-ENSACLP00000013815517 (aa)--
ENSACLT00000014123-4869-ENSACLP00000013789635 (aa)XP_026039278UPI000329F8FE
Gene Model
Click here to download ENSACLG00000009399's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000009399's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSACLG00000009399pabpc1a9879.121ENSACLG00000024791pabpc1l9969.194
ENSACLG00000009399pabpc1a6833.684ENSACLG00000006706rbms2b5433.684
ENSACLG00000009399pabpc1a6533.088ENSACLG00000026031ncl8332.353
ENSACLG00000009399pabpc1a6731.061ENSACLG00000019504-9131.061
ENSACLG00000009399pabpc1a5737.349ENSACLG00000011828celf45637.349
ENSACLG00000009399pabpc1a6836.145ENSACLG00000002786elavl48436.145
ENSACLG00000009399pabpc1a5734.884ENSACLG00000013768-5934.091
ENSACLG00000009399pabpc1a5839.759ENSACLG00000023709celf5a5139.759
ENSACLG00000009399pabpc1a5436.986ENSACLG00000020342celf3b5836.986
ENSACLG00000009399pabpc1a5738.554ENSACLG00000016215si:dkey-205h23.27138.554
ENSACLG00000009399pabpc1a6831.579ENSACLG00000013048RBMS15331.579
ENSACLG00000009399pabpc1a9791.304ENSACLG00000019558pabpc48491.304
ENSACLG00000009399pabpc1a6937.349ENSACLG00000002715ELAVL28537.349
ENSACLG00000009399pabpc1a6833.684ENSACLG00000002393rbms2a7333.684
ENSACLG00000009399pabpc1a10093.510ENSACLG00000014335pabpc1b9993.510
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSACLG00000009399pabpc1a6878.889ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSACLG00000009399pabpc1a6878.889ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSACLG00000009399pabpc1a10094.005ENSAPOG00000017776pabpc1b10090.439Acanthochromis_polyacanthus
ENSACLG00000009399pabpc1a10098.110ENSAPOG00000015105pabpc1a10098.110Acanthochromis_polyacanthus
ENSACLG00000009399pabpc1a6878.889ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSACLG00000009399pabpc1a10099.213ENSACIG00000004685pabpc1a10099.213Amphilophus_citrinellus
ENSACLG00000009399pabpc1a10093.285ENSACIG00000018366pabpc1b10086.719Amphilophus_citrinellus
ENSACLG00000009399pabpc1a10090.618ENSAOCG00000019839pabpc1b10090.596Amphiprion_ocellaris
ENSACLG00000009399pabpc1a10098.268ENSAOCG00000011656pabpc1a10098.268Amphiprion_ocellaris
ENSACLG00000009399pabpc1a10098.268ENSAPEG00000006963pabpc1a10098.268Amphiprion_percula
ENSACLG00000009399pabpc1a10090.618ENSAPEG00000010435pabpc1b10090.596Amphiprion_percula
ENSACLG00000009399pabpc1a10090.596ENSATEG00000012917pabpc1b9990.596Anabas_testudineus
ENSACLG00000009399pabpc1a10097.638ENSATEG00000024852pabpc1a10097.638Anabas_testudineus
ENSACLG00000009399pabpc1a6878.889ENSANAG00000019431-9880.102Aotus_nancymaae
ENSACLG00000009399pabpc1a6878.889ENSANAG00000019429-9880.102Aotus_nancymaae
ENSACLG00000009399pabpc1a10091.972ENSAMXG00000008599pabpc1b9991.972Astyanax_mexicanus
ENSACLG00000009399pabpc1a6878.889ENSBTAG00000052491-9778.889Bos_taurus
ENSACLG00000009399pabpc1a6878.889ENSBTAG00000050902-9879.024Bos_taurus
ENSACLG00000009399pabpc1a6878.889ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSACLG00000009399pabpc1a6878.889ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSACLG00000009399pabpc1a6878.889ENSCHIG00000006283-9880.102Capra_hircus
ENSACLG00000009399pabpc1a6878.889ENSCHIG00000011138-9880.102Capra_hircus
ENSACLG00000009399pabpc1a6878.889ENSTSYG00000001775-9880.102Carlito_syrichta
ENSACLG00000009399pabpc1a6878.889ENSCPOG00000009525-9880.102Cavia_porcellus
ENSACLG00000009399pabpc1a6878.889ENSCCAG00000031524-9880.102Cebus_capucinus
ENSACLG00000009399pabpc1a6878.889ENSCATG00000043125-9880.102Cercocebus_atys
ENSACLG00000009399pabpc1a6878.889ENSCATG00000042826-9880.102Cercocebus_atys
ENSACLG00000009399pabpc1a6876.667ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSACLG00000009399pabpc1a6876.667ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSACLG00000009399pabpc1a6878.889ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSACLG00000009399pabpc1a6879.641ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSACLG00000009399pabpc1a10091.743ENSCSEG00000015241-10088.871Cynoglossus_semilaevis
ENSACLG00000009399pabpc1a9999.279ENSCSEG00000013324pabpc1a9999.279Cynoglossus_semilaevis
ENSACLG00000009399pabpc1a10089.474ENSCVAG00000005489pabpc1b9989.474Cyprinodon_variegatus
ENSACLG00000009399pabpc1a10097.638ENSCVAG00000021872pabpc1a10097.638Cyprinodon_variegatus
ENSACLG00000009399pabpc1a10096.154ENSDARG00000017219pabpc1a10091.536Danio_rerio
ENSACLG00000009399pabpc1a10090.596ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSACLG00000009399pabpc1a6879.191ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSACLG00000009399pabpc1a6876.111ENSDORG00000011362-9877.551Dipodomys_ordii
ENSACLG00000009399pabpc1a6878.889ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSACLG00000009399pabpc1a6878.889ENSECAG00000002620-9878.641Equus_caballus
ENSACLG00000009399pabpc1a6875.000ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSACLG00000009399pabpc1a9993.868ENSELUG00000003614pabpc1a10093.868Esox_lucius
ENSACLG00000009399pabpc1a6858.937ENSELUG00000005389-9758.621Esox_lucius
ENSACLG00000009399pabpc1a10091.156ENSELUG00000015062-9991.156Esox_lucius
ENSACLG00000009399pabpc1a6878.889ENSFCAG00000039701-9880.102Felis_catus
ENSACLG00000009399pabpc1a6878.889ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSACLG00000009399pabpc1a10097.795ENSFHEG00000018979pabpc1a10097.795Fundulus_heteroclitus
ENSACLG00000009399pabpc1a10092.661ENSFHEG00000008186pabpc1b9991.076Fundulus_heteroclitus
ENSACLG00000009399pabpc1a9494.241ENSGMOG00000002448-10080.930Gadus_morhua
ENSACLG00000009399pabpc1a9994.725ENSGMOG00000013448pabpc1a9994.725Gadus_morhua
ENSACLG00000009399pabpc1a10097.323ENSGAFG00000019750pabpc1a10097.323Gambusia_affinis
ENSACLG00000009399pabpc1a10091.136ENSGAFG00000010193pabpc1b9991.304Gambusia_affinis
ENSACLG00000009399pabpc1a10089.474ENSGACG00000003771pabpc1b9989.474Gasterosteus_aculeatus
ENSACLG00000009399pabpc1a10097.480ENSGACG00000003572pabpc1a10097.480Gasterosteus_aculeatus
ENSACLG00000009399pabpc1a6878.889ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSACLG00000009399pabpc1a6878.889ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSACLG00000009399pabpc1a10093.510ENSHBUG00000002075pabpc1b9993.510Haplochromis_burtoni
ENSACLG00000009399pabpc1a100100.000ENSHBUG00000020487pabpc1a100100.000Haplochromis_burtoni
ENSACLG00000009399pabpc1a6877.778ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSACLG00000009399pabpc1a6877.778ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSACLG00000009399pabpc1a6877.778ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSACLG00000009399pabpc1a9387.500ENSHCOG00000003175pabpc1b9977.087Hippocampus_comes
ENSACLG00000009399pabpc1a10097.480ENSHCOG00000013502pabpc1a10097.480Hippocampus_comes
ENSACLG00000009399pabpc1a10084.458ENSIPUG00000010791-10084.458Ictalurus_punctatus
ENSACLG00000009399pabpc1a10096.386ENSIPUG00000008848pabpc1a9996.386Ictalurus_punctatus
ENSACLG00000009399pabpc1a7064.641ENSIPUG00000021244-6555.717Ictalurus_punctatus
ENSACLG00000009399pabpc1a7858.209ENSIPUG00000018724-7658.209Ictalurus_punctatus
ENSACLG00000009399pabpc1a6878.333ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSACLG00000009399pabpc1a6878.333ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSACLG00000009399pabpc1a6877.222ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSACLG00000009399pabpc1a10097.638ENSKMAG00000000605pabpc1a10097.638Kryptolebias_marmoratus
ENSACLG00000009399pabpc1a10091.364ENSKMAG00000008049pabpc1b9991.364Kryptolebias_marmoratus
ENSACLG00000009399pabpc1a10097.480ENSLBEG00000024002-10097.480Labrus_bergylta
ENSACLG00000009399pabpc1a10093.285ENSLBEG00000026845pabpc1b9993.285Labrus_bergylta
ENSACLG00000009399pabpc1a6877.778ENSLAFG00000023096-9878.974Loxodonta_africana
ENSACLG00000009399pabpc1a6878.453ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSACLG00000009399pabpc1a6878.889ENSMMUG00000039929-9880.102Macaca_mulatta
ENSACLG00000009399pabpc1a6878.889ENSMMUG00000009740-9880.102Macaca_mulatta
ENSACLG00000009399pabpc1a6878.889ENSMMUG00000037681-9880.102Macaca_mulatta
ENSACLG00000009399pabpc1a6878.889ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSACLG00000009399pabpc1a6878.889ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSACLG00000009399pabpc1a10094.484ENSMAMG00000014610pabpc1b9991.136Mastacembelus_armatus
ENSACLG00000009399pabpc1a9998.798ENSMAMG00000004502-10097.795Mastacembelus_armatus
ENSACLG00000009399pabpc1a100100.000ENSMZEG00005025416pabpc1a100100.000Maylandia_zebra
ENSACLG00000009399pabpc1a10093.510ENSMZEG00005026745pabpc1b9993.510Maylandia_zebra
ENSACLG00000009399pabpc1a6878.889ENSMICG00000047642-9880.102Microcebus_murinus
ENSACLG00000009399pabpc1a10098.066ENSMMOG00000018044pabpc1a10098.077Mola_mola
ENSACLG00000009399pabpc1a10085.086ENSMMOG00000018009pabpc1b10085.243Mola_mola
ENSACLG00000009399pabpc1a9881.053ENSMODG00000013156-9879.335Monodelphis_domestica
ENSACLG00000009399pabpc1a9872.406ENSMODG00000015024-9872.406Monodelphis_domestica
ENSACLG00000009399pabpc1a10099.279ENSMALG00000013020-9999.279Monopterus_albus
ENSACLG00000009399pabpc1a10087.478ENSMALG00000006066pabpc1b9987.478Monopterus_albus
ENSACLG00000009399pabpc1a6880.838ENSNGAG00000012688-9878.571Nannospalax_galili
ENSACLG00000009399pabpc1a100100.000ENSNBRG00000003068-100100.000Neolamprologus_brichardi
ENSACLG00000009399pabpc1a10093.750ENSNBRG00000013737pabpc1b9993.750Neolamprologus_brichardi
ENSACLG00000009399pabpc1a6878.889ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSACLG00000009399pabpc1a6878.333ENSODEG00000018540-9879.592Octodon_degus
ENSACLG00000009399pabpc1a10099.760ENSONIG00000006871-10099.055Oreochromis_niloticus
ENSACLG00000009399pabpc1a10093.269ENSONIG00000002717pabpc1b9993.269Oreochromis_niloticus
ENSACLG00000009399pabpc1a6878.889ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSACLG00000009399pabpc1a10089.663ENSORLG00000003008-9889.663Oryzias_latipes
ENSACLG00000009399pabpc1a10099.010ENSORLG00000002691pabpc1a10098.571Oryzias_latipes
ENSACLG00000009399pabpc1a9990.196ENSORLG00020022259-9989.423Oryzias_latipes_hni
ENSACLG00000009399pabpc1a10099.010ENSORLG00020022398pabpc1a10096.378Oryzias_latipes_hni
ENSACLG00000009399pabpc1a10089.663ENSORLG00015010932-9989.663Oryzias_latipes_hsok
ENSACLG00000009399pabpc1a10099.010ENSORLG00015013633pabpc110096.220Oryzias_latipes_hsok
ENSACLG00000009399pabpc1a10084.586ENSOMEG00000013627pabpc1b10084.586Oryzias_melastigma
ENSACLG00000009399pabpc1a10099.010ENSOMEG00000020219pabpc1a10097.165Oryzias_melastigma
ENSACLG00000009399pabpc1a6878.889ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSACLG00000009399pabpc1a6878.889ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSACLG00000009399pabpc1a6878.889ENSOARG00000005943-9880.102Ovis_aries
ENSACLG00000009399pabpc1a6878.889ENSPPAG00000012920-9880.102Pan_paniscus
ENSACLG00000009399pabpc1a6878.889ENSPPRG00000011804-9880.102Panthera_pardus
ENSACLG00000009399pabpc1a6878.889ENSPPRG00000011809-9880.102Panthera_pardus
ENSACLG00000009399pabpc1a6878.889ENSPTRG00000028252-9880.102Pan_troglodytes
ENSACLG00000009399pabpc1a6878.889ENSPANG00000011549-9880.102Papio_anubis
ENSACLG00000009399pabpc1a10091.284ENSPKIG00000005676pabpc1b10090.439Paramormyrops_kingsleyae
ENSACLG00000009399pabpc1a8098.077ENSPMGG00000022487pabpc1a9298.202Periophthalmus_magnuspinnatus
ENSACLG00000009399pabpc1a8092.308ENSPMGG00000023134-9792.377Periophthalmus_magnuspinnatus
ENSACLG00000009399pabpc1a9976.606ENSPCIG00000016995-5576.606Phascolarctos_cinereus
ENSACLG00000009399pabpc1a10096.136ENSPFOG00000010815pabpc1a10096.136Poecilia_formosa
ENSACLG00000009399pabpc1a10094.231ENSPFOG00000005917pabpc1b9991.136Poecilia_formosa
ENSACLG00000009399pabpc1a10091.364ENSPLAG00000001388pabpc1b9991.533Poecilia_latipinna
ENSACLG00000009399pabpc1a10098.110ENSPLAG00000004114pabpc1a10098.110Poecilia_latipinna
ENSACLG00000009399pabpc1a10098.110ENSPMEG00000001334pabpc1a10098.110Poecilia_mexicana
ENSACLG00000009399pabpc1a10094.231ENSPMEG00000014399pabpc1b9991.136Poecilia_mexicana
ENSACLG00000009399pabpc1a10099.420ENSPREG00000019595pabpc1a10099.519Poecilia_reticulata
ENSACLG00000009399pabpc1a10091.364ENSPREG00000010911pabpc1b9991.533Poecilia_reticulata
ENSACLG00000009399pabpc1a6878.889ENSPPYG00000020468-9880.102Pongo_abelii
ENSACLG00000009399pabpc1a6878.889ENSPCAG00000005308-9880.102Procavia_capensis
ENSACLG00000009399pabpc1a6878.333ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSACLG00000009399pabpc1a6879.330ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSACLG00000009399pabpc1a100100.000ENSPNYG00000005192pabpc1a100100.000Pundamilia_nyererei
ENSACLG00000009399pabpc1a10093.510ENSPNYG00000012578pabpc1b9993.510Pundamilia_nyererei
ENSACLG00000009399pabpc1a10095.904ENSPNAG00000028408pabpc1a9995.904Pygocentrus_nattereri
ENSACLG00000009399pabpc1a10091.514ENSPNAG00000024626pabpc1b9991.344Pygocentrus_nattereri
ENSACLG00000009399pabpc1a9989.671ENSRBIG00000028738-9589.671Rhinopithecus_bieti
ENSACLG00000009399pabpc1a6878.889ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSACLG00000009399pabpc1a6878.889ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSACLG00000009399pabpc1a9768.282ENSSHAG00000000511-10068.282Sarcophilus_harrisii
ENSACLG00000009399pabpc1a10094.712ENSSFOG00015002752-9994.712Scleropages_formosus
ENSACLG00000009399pabpc1a7877.070ENSSFOG00015019668-8878.613Scleropages_formosus
ENSACLG00000009399pabpc1a10091.116ENSSFOG00015006662pabpc1a9991.116Scleropages_formosus
ENSACLG00000009399pabpc1a10099.010ENSSMAG00000010803pabpc1a10097.795Scophthalmus_maximus
ENSACLG00000009399pabpc1a10088.871ENSSMAG00000006869pabpc1b10089.028Scophthalmus_maximus
ENSACLG00000009399pabpc1a10097.638ENSSDUG00000006675pabpc1a10097.638Seriola_dumerili
ENSACLG00000009399pabpc1a10096.078ENSSDUG00000011965pabpc1b9991.304Seriola_dumerili
ENSACLG00000009399pabpc1a10090.271ENSSLDG00000014156pabpc1b10090.202Seriola_lalandi_dorsalis
ENSACLG00000009399pabpc1a10097.638ENSSLDG00000011661pabpc1a10097.638Seriola_lalandi_dorsalis
ENSACLG00000009399pabpc1a10091.304ENSSPAG00000019265pabpc1b10090.909Stegastes_partitus
ENSACLG00000009399pabpc1a10098.268ENSSPAG00000014453-10098.268Stegastes_partitus
ENSACLG00000009399pabpc1a6878.889ENSSSCG00000032167-9880.102Sus_scrofa
ENSACLG00000009399pabpc1a6878.889ENSSSCG00000036336-9880.102Sus_scrofa
ENSACLG00000009399pabpc1a10092.806ENSTRUG00000003767-9990.951Takifugu_rubripes
ENSACLG00000009399pabpc1a10095.413ENSTRUG00000011577-10095.440Takifugu_rubripes
ENSACLG00000009399pabpc1a10088.341ENSTNIG00000009153pabpc1b10086.604Tetraodon_nigroviridis
ENSACLG00000009399pabpc1a9997.590ENSTNIG00000013307pabpc1a10092.403Tetraodon_nigroviridis
ENSACLG00000009399pabpc1a6878.889ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSACLG00000009399pabpc1a6878.889ENSUAMG00000008089-9880.102Ursus_americanus
ENSACLG00000009399pabpc1a6878.889ENSUMAG00000003364-9880.102Ursus_maritimus
ENSACLG00000009399pabpc1a9762.642ENSUMAG00000023926-8969.890Ursus_maritimus
ENSACLG00000009399pabpc1a6878.333ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSACLG00000009399pabpc1a9745.581ENSXETG00000015439-9745.392Xenopus_tropicalis
ENSACLG00000009399pabpc1a10085.580ENSXCOG00000019901pabpc1b10085.423Xiphophorus_couchianus
ENSACLG00000009399pabpc1a10091.811ENSXCOG00000017066pabpc1a10091.811Xiphophorus_couchianus
ENSACLG00000009399pabpc1a10097.480ENSXMAG00000002555pabpc1a10097.480Xiphophorus_maculatus
ENSACLG00000009399pabpc1a10091.364ENSXMAG00000003753pabpc1b9991.533Xiphophorus_maculatus

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