EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000010374 (Gene tree)
Gene ID: 113021077
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 6287 bases
Position: chr4:22485839-22492125
Accession: 113021077
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000015252	zf-CCCH	PF00642.24	4.1e-22	1	2
ENSACLP00000015252	zf-CCCH	PF00642.24	4.1e-22	2	2
ENSACLP00000015241	zf-CCCH	PF00642.24	1.2e-21	1	2
ENSACLP00000015241	zf-CCCH	PF00642.24	1.2e-21	2	2
ENSACLP00000015241	zf-CCHC	PF00098.23	5.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000015597	-	4278	-	ENSACLP00000015241	265 (aa)	XP_026021290	UPI000329ADDB
ENSACLT00000015609	-	678	-	ENSACLP00000015252	225 (aa)	-	-

Gene Model

Click here to download ENSACLG00000010374's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000010374's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000010374	cpsf4	100	84.074	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSACLG00000010374	cpsf4	67	86.441	ENSAPOG00000004921	cpsf4	100	86.441	Acanthochromis_polyacanthus
ENSACLG00000010374	cpsf4	100	83.704	ENSAMEG00000006252	CPSF4	100	83.704	Ailuropoda_melanoleuca
ENSACLG00000010374	cpsf4	100	88.679	ENSACIG00000009248	cpsf4	100	88.679	Amphilophus_citrinellus
ENSACLG00000010374	cpsf4	100	93.962	ENSAOCG00000019616	cpsf4	100	93.962	Amphiprion_ocellaris
ENSACLG00000010374	cpsf4	100	93.962	ENSAPEG00000011679	cpsf4	100	93.962	Amphiprion_percula
ENSACLG00000010374	cpsf4	100	94.007	ENSATEG00000007010	cpsf4	100	94.007	Anabas_testudineus
ENSACLG00000010374	cpsf4	100	82.593	ENSACAG00000012941	CPSF4	89	82.593	Anolis_carolinensis
ENSACLG00000010374	cpsf4	100	84.074	ENSANAG00000021360	CPSF4	100	84.074	Aotus_nancymaae
ENSACLG00000010374	cpsf4	100	84.815	ENSAMXG00000031647	cpsf4	100	83.394	Astyanax_mexicanus
ENSACLG00000010374	cpsf4	100	79.245	ENSBTAG00000002090	CPSF4	100	80.658	Bos_taurus
ENSACLG00000010374	cpsf4	100	84.074	ENSCJAG00000015826	CPSF4	100	84.074	Callithrix_jacchus
ENSACLG00000010374	cpsf4	100	83.704	ENSCAFG00000015036	CPSF4	99	86.826	Canis_familiaris
ENSACLG00000010374	cpsf4	100	78.889	ENSCAFG00020014462	CPSF4	100	78.889	Canis_lupus_dingo
ENSACLG00000010374	cpsf4	100	83.333	ENSCHIG00000014313	CPSF4	100	83.333	Capra_hircus
ENSACLG00000010374	cpsf4	89	74.262	ENSTSYG00000008195	-	99	74.667	Carlito_syrichta
ENSACLG00000010374	cpsf4	100	81.148	ENSTSYG00000005712	-	100	81.148	Carlito_syrichta
ENSACLG00000010374	cpsf4	100	73.061	ENSTSYG00000014604	-	100	73.061	Carlito_syrichta
ENSACLG00000010374	cpsf4	81	83.562	ENSCAPG00000013881	CPSF4	87	83.562	Cavia_aperea
ENSACLG00000010374	cpsf4	100	80.738	ENSCPOG00000001783	CPSF4	100	80.738	Cavia_porcellus
ENSACLG00000010374	cpsf4	100	84.074	ENSCCAG00000028291	CPSF4	100	84.074	Cebus_capucinus
ENSACLG00000010374	cpsf4	100	84.074	ENSCATG00000038440	CPSF4	100	84.074	Cercocebus_atys
ENSACLG00000010374	cpsf4	100	83.704	ENSCLAG00000007050	CPSF4	100	83.704	Chinchilla_lanigera
ENSACLG00000010374	cpsf4	100	84.074	ENSCSAG00000017795	CPSF4	100	84.074	Chlorocebus_sabaeus
ENSACLG00000010374	cpsf4	74	78.313	ENSCPBG00000010269	-	100	78.313	Chrysemys_picta_bellii
ENSACLG00000010374	cpsf4	80	82.949	ENSCPBG00000020869	CPSF4	100	82.949	Chrysemys_picta_bellii
ENSACLG00000010374	cpsf4	96	61.751	ENSCING00000021080	-	97	56.250	Ciona_intestinalis
ENSACLG00000010374	cpsf4	96	62.212	ENSCSAVG00000011469	-	97	55.160	Ciona_savignyi
ENSACLG00000010374	cpsf4	100	84.074	ENSCANG00000019384	CPSF4	100	84.074	Colobus_angolensis_palliatus
ENSACLG00000010374	cpsf4	100	80.738	ENSCGRG00001024184	Cpsf4	100	80.738	Cricetulus_griseus_chok1gshd
ENSACLG00000010374	cpsf4	100	83.704	ENSCGRG00000013892	Cpsf4	100	83.704	Cricetulus_griseus_crigri
ENSACLG00000010374	cpsf4	100	93.208	ENSCSEG00000019055	cpsf4	100	93.208	Cynoglossus_semilaevis
ENSACLG00000010374	cpsf4	100	90.189	ENSCVAG00000016528	cpsf4	100	90.189	Cyprinodon_variegatus
ENSACLG00000010374	cpsf4	100	84.502	ENSDARG00000020217	cpsf4	100	84.502	Danio_rerio
ENSACLG00000010374	cpsf4	100	83.704	ENSDNOG00000006344	CPSF4	100	83.704	Dasypus_novemcinctus
ENSACLG00000010374	cpsf4	80	83.028	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSACLG00000010374	cpsf4	96	62.385	FBgn0015621	Clp	99	54.181	Drosophila_melanogaster
ENSACLG00000010374	cpsf4	83	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSACLG00000010374	cpsf4	99	70.042	ENSEBUG00000012552	cpsf4	98	70.042	Eptatretus_burgeri
ENSACLG00000010374	cpsf4	100	80.738	ENSEASG00005002487	CPSF4	100	80.738	Equus_asinus_asinus
ENSACLG00000010374	cpsf4	100	83.704	ENSECAG00000007525	CPSF4	100	83.704	Equus_caballus
ENSACLG00000010374	cpsf4	63	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSACLG00000010374	cpsf4	100	86.397	ENSELUG00000011481	cpsf4	100	86.397	Esox_lucius
ENSACLG00000010374	cpsf4	100	83.704	ENSFCAG00000015070	CPSF4	100	83.704	Felis_catus
ENSACLG00000010374	cpsf4	73	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSACLG00000010374	cpsf4	100	79.835	ENSFALG00000013799	CPSF4	100	79.835	Ficedula_albicollis
ENSACLG00000010374	cpsf4	90	82.787	ENSFDAG00000014092	CPSF4	100	82.787	Fukomys_damarensis
ENSACLG00000010374	cpsf4	100	90.566	ENSFHEG00000010880	cpsf4	100	90.566	Fundulus_heteroclitus
ENSACLG00000010374	cpsf4	100	82.288	ENSGMOG00000002330	cpsf4	100	82.288	Gadus_morhua
ENSACLG00000010374	cpsf4	100	81.070	ENSGALG00000004714	CPSF4	100	81.070	Gallus_gallus
ENSACLG00000010374	cpsf4	99	36.612	ENSGALG00000004441	-	98	36.612	Gallus_gallus
ENSACLG00000010374	cpsf4	100	89.057	ENSGAFG00000010580	cpsf4	100	89.057	Gambusia_affinis
ENSACLG00000010374	cpsf4	100	85.448	ENSGACG00000007792	cpsf4	100	85.448	Gasterosteus_aculeatus
ENSACLG00000010374	cpsf4	81	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSACLG00000010374	cpsf4	100	84.074	ENSGAGG00000021835	CPSF4	100	84.074	Gopherus_agassizii
ENSACLG00000010374	cpsf4	100	84.074	ENSGGOG00000015131	CPSF4	100	84.074	Gorilla_gorilla
ENSACLG00000010374	cpsf4	100	100.000	ENSHBUG00000013699	cpsf4	100	100.000	Haplochromis_burtoni
ENSACLG00000010374	cpsf4	100	83.026	ENSHGLG00000017150	CPSF4	100	83.026	Heterocephalus_glaber_female
ENSACLG00000010374	cpsf4	87	80.508	ENSHGLG00100009215	-	100	80.508	Heterocephalus_glaber_male
ENSACLG00000010374	cpsf4	100	61.333	ENSHGLG00100017302	-	100	61.333	Heterocephalus_glaber_male
ENSACLG00000010374	cpsf4	100	89.098	ENSHCOG00000004397	cpsf4	100	89.098	Hippocampus_comes
ENSACLG00000010374	cpsf4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.240	Ictalurus_punctatus
ENSACLG00000010374	cpsf4	100	83.704	ENSSTOG00000001688	CPSF4	100	83.704	Ictidomys_tridecemlineatus
ENSACLG00000010374	cpsf4	100	83.704	ENSJJAG00000019426	Cpsf4	100	83.704	Jaculus_jaculus
ENSACLG00000010374	cpsf4	100	89.811	ENSKMAG00000015642	cpsf4	100	89.811	Kryptolebias_marmoratus
ENSACLG00000010374	cpsf4	100	61.224	ENSLACG00000018470	-	100	61.224	Latimeria_chalumnae
ENSACLG00000010374	cpsf4	100	83.395	ENSLACG00000010938	CPSF4	100	83.395	Latimeria_chalumnae
ENSACLG00000010374	cpsf4	100	80.741	ENSLOCG00000004814	cpsf4	100	82.156	Lepisosteus_oculatus
ENSACLG00000010374	cpsf4	100	84.074	ENSLAFG00000000159	CPSF4	100	84.074	Loxodonta_africana
ENSACLG00000010374	cpsf4	100	84.074	ENSMFAG00000001462	CPSF4	100	84.074	Macaca_fascicularis
ENSACLG00000010374	cpsf4	100	84.074	ENSMMUG00000019191	CPSF4	100	84.074	Macaca_mulatta
ENSACLG00000010374	cpsf4	100	84.074	ENSMNEG00000032306	CPSF4	100	84.074	Macaca_nemestrina
ENSACLG00000010374	cpsf4	100	84.074	ENSMLEG00000034721	CPSF4	100	84.074	Mandrillus_leucophaeus
ENSACLG00000010374	cpsf4	100	93.233	ENSMAMG00000006244	cpsf4	100	93.233	Mastacembelus_armatus
ENSACLG00000010374	cpsf4	100	100.000	ENSMZEG00005007515	cpsf4	100	100.000	Maylandia_zebra
ENSACLG00000010374	cpsf4	87	77.922	ENSMGAG00000004235	CPSF4	100	79.426	Meleagris_gallopavo
ENSACLG00000010374	cpsf4	100	83.704	ENSMAUG00000021253	Cpsf4	100	83.704	Mesocricetus_auratus
ENSACLG00000010374	cpsf4	100	84.074	ENSMICG00000017429	CPSF4	100	84.074	Microcebus_murinus
ENSACLG00000010374	cpsf4	100	83.704	ENSMOCG00000014901	Cpsf4	100	83.704	Microtus_ochrogaster
ENSACLG00000010374	cpsf4	100	91.729	ENSMMOG00000001813	cpsf4	100	91.729	Mola_mola
ENSACLG00000010374	cpsf4	100	85.185	ENSMODG00000001367	CPSF4	100	85.185	Monodelphis_domestica
ENSACLG00000010374	cpsf4	100	92.481	ENSMALG00000012611	cpsf4	100	92.481	Monopterus_albus
ENSACLG00000010374	cpsf4	100	83.704	MGP_CAROLIEiJ_G0028012	Cpsf4	100	83.704	Mus_caroli
ENSACLG00000010374	cpsf4	100	83.704	ENSMUSG00000029625	Cpsf4	100	83.704	Mus_musculus
ENSACLG00000010374	cpsf4	100	83.704	MGP_PahariEiJ_G0024581	Cpsf4	100	83.704	Mus_pahari
ENSACLG00000010374	cpsf4	100	84.074	MGP_SPRETEiJ_G0029013	Cpsf4	100	84.074	Mus_spretus
ENSACLG00000010374	cpsf4	100	83.704	ENSMPUG00000016508	CPSF4	100	83.704	Mustela_putorius_furo
ENSACLG00000010374	cpsf4	87	77.922	ENSMLUG00000010980	CPSF4	100	78.947	Myotis_lucifugus
ENSACLG00000010374	cpsf4	100	83.704	ENSNGAG00000001567	Cpsf4	100	83.704	Nannospalax_galili
ENSACLG00000010374	cpsf4	91	99.170	ENSNBRG00000003943	cpsf4	98	99.170	Neolamprologus_brichardi
ENSACLG00000010374	cpsf4	100	82.090	ENSNLEG00000011074	CPSF4	100	82.090	Nomascus_leucogenys
ENSACLG00000010374	cpsf4	100	85.185	ENSMEUG00000006955	CPSF4	100	85.185	Notamacropus_eugenii
ENSACLG00000010374	cpsf4	100	83.333	ENSOPRG00000013663	CPSF4	100	83.333	Ochotona_princeps
ENSACLG00000010374	cpsf4	100	83.704	ENSODEG00000011181	-	100	83.704	Octodon_degus
ENSACLG00000010374	cpsf4	98	69.167	ENSODEG00000018283	-	91	69.167	Octodon_degus
ENSACLG00000010374	cpsf4	100	64.945	ENSODEG00000009779	-	100	64.945	Octodon_degus
ENSACLG00000010374	cpsf4	100	99.245	ENSONIG00000008495	cpsf4	100	99.245	Oreochromis_niloticus
ENSACLG00000010374	cpsf4	87	82.979	ENSOANG00000007729	CPSF4	100	82.979	Ornithorhynchus_anatinus
ENSACLG00000010374	cpsf4	100	52.518	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSACLG00000010374	cpsf4	100	83.333	ENSOCUG00000002437	CPSF4	70	83.333	Oryctolagus_cuniculus
ENSACLG00000010374	cpsf4	100	92.453	ENSORLG00000022798	cpsf4	100	92.453	Oryzias_latipes
ENSACLG00000010374	cpsf4	100	92.453	ENSORLG00020008548	cpsf4	100	92.453	Oryzias_latipes_hni
ENSACLG00000010374	cpsf4	100	92.075	ENSORLG00015019575	cpsf4	100	92.075	Oryzias_latipes_hsok
ENSACLG00000010374	cpsf4	100	92.075	ENSOMEG00000005176	cpsf4	100	92.075	Oryzias_melastigma
ENSACLG00000010374	cpsf4	100	84.074	ENSOGAG00000010884	CPSF4	100	84.074	Otolemur_garnettii
ENSACLG00000010374	cpsf4	100	73.358	ENSOARG00000018668	CPSF4	100	73.358	Ovis_aries
ENSACLG00000010374	cpsf4	100	84.074	ENSPPAG00000043355	CPSF4	100	84.074	Pan_paniscus
ENSACLG00000010374	cpsf4	100	83.704	ENSPPRG00000003134	CPSF4	100	83.704	Panthera_pardus
ENSACLG00000010374	cpsf4	90	83.539	ENSPTIG00000005604	CPSF4	90	83.539	Panthera_tigris_altaica
ENSACLG00000010374	cpsf4	100	84.074	ENSPTRG00000019453	CPSF4	100	84.074	Pan_troglodytes
ENSACLG00000010374	cpsf4	100	84.074	ENSPANG00000023123	CPSF4	100	84.074	Papio_anubis
ENSACLG00000010374	cpsf4	100	83.577	ENSPKIG00000014278	cpsf4	100	83.577	Paramormyrops_kingsleyae
ENSACLG00000010374	cpsf4	81	59.813	ENSPSIG00000018198	-	100	60.417	Pelodiscus_sinensis
ENSACLG00000010374	cpsf4	80	82.488	ENSPSIG00000011229	CPSF4	100	82.488	Pelodiscus_sinensis
ENSACLG00000010374	cpsf4	100	81.513	ENSPMGG00000017735	cpsf4	100	81.513	Periophthalmus_magnuspinnatus
ENSACLG00000010374	cpsf4	100	83.704	ENSPEMG00000004508	Cpsf4	100	83.704	Peromyscus_maniculatus_bairdii
ENSACLG00000010374	cpsf4	100	85.185	ENSPCIG00000024776	CPSF4	100	85.185	Phascolarctos_cinereus
ENSACLG00000010374	cpsf4	100	89.057	ENSPFOG00000014912	cpsf4	100	89.057	Poecilia_formosa
ENSACLG00000010374	cpsf4	100	81.887	ENSPLAG00000009599	cpsf4	100	81.887	Poecilia_latipinna
ENSACLG00000010374	cpsf4	100	89.057	ENSPMEG00000009790	cpsf4	100	89.057	Poecilia_mexicana
ENSACLG00000010374	cpsf4	100	88.679	ENSPREG00000018166	cpsf4	100	88.679	Poecilia_reticulata
ENSACLG00000010374	cpsf4	87	82.979	ENSPPYG00000017378	CPSF4	100	82.979	Pongo_abelii
ENSACLG00000010374	cpsf4	100	84.074	ENSPCAG00000001892	CPSF4	100	84.074	Procavia_capensis
ENSACLG00000010374	cpsf4	100	83.704	ENSPCOG00000012771	CPSF4	100	83.704	Propithecus_coquereli
ENSACLG00000010374	cpsf4	100	78.519	ENSPVAG00000007531	CPSF4	100	78.519	Pteropus_vampyrus
ENSACLG00000010374	cpsf4	100	100.000	ENSPNYG00000018559	cpsf4	100	100.000	Pundamilia_nyererei
ENSACLG00000010374	cpsf4	100	85.556	ENSPNAG00000003736	cpsf4	100	85.556	Pygocentrus_nattereri
ENSACLG00000010374	cpsf4	100	79.623	ENSRNOG00000000985	Cpsf4	100	80.658	Rattus_norvegicus
ENSACLG00000010374	cpsf4	87	83.404	ENSRBIG00000033886	CPSF4	100	83.404	Rhinopithecus_bieti
ENSACLG00000010374	cpsf4	100	81.148	ENSRROG00000040431	CPSF4	100	81.148	Rhinopithecus_roxellana
ENSACLG00000010374	cpsf4	100	84.074	ENSSBOG00000020493	CPSF4	100	84.074	Saimiri_boliviensis_boliviensis
ENSACLG00000010374	cpsf4	100	85.185	ENSSHAG00000011533	CPSF4	100	85.185	Sarcophilus_harrisii
ENSACLG00000010374	cpsf4	100	82.246	ENSSFOG00015007883	cpsf4	100	82.014	Scleropages_formosus
ENSACLG00000010374	cpsf4	100	85.306	ENSSMAG00000006374	cpsf4	100	85.306	Scophthalmus_maximus
ENSACLG00000010374	cpsf4	100	94.361	ENSSDUG00000018887	cpsf4	100	94.361	Seriola_dumerili
ENSACLG00000010374	cpsf4	100	94.361	ENSSLDG00000019078	cpsf4	100	94.361	Seriola_lalandi_dorsalis
ENSACLG00000010374	cpsf4	87	83.404	ENSSARG00000012416	CPSF4	100	83.404	Sorex_araneus
ENSACLG00000010374	cpsf4	100	82.593	ENSSPUG00000003549	CPSF4	100	82.593	Sphenodon_punctatus
ENSACLG00000010374	cpsf4	95	66.359	ENSSPUG00000014803	-	97	66.359	Sphenodon_punctatus
ENSACLG00000010374	cpsf4	100	89.167	ENSSPAG00000006174	cpsf4	100	89.167	Stegastes_partitus
ENSACLG00000010374	cpsf4	100	81.148	ENSSSCG00000026896	CPSF4	100	81.148	Sus_scrofa
ENSACLG00000010374	cpsf4	100	78.776	ENSTGUG00000007552	CPSF4	100	78.776	Taeniopygia_guttata
ENSACLG00000010374	cpsf4	100	88.346	ENSTRUG00000024220	cpsf4	100	88.346	Takifugu_rubripes
ENSACLG00000010374	cpsf4	100	89.057	ENSTNIG00000006265	cpsf4	100	89.434	Tetraodon_nigroviridis
ENSACLG00000010374	cpsf4	87	74.894	ENSTBEG00000011406	CPSF4	100	74.894	Tupaia_belangeri
ENSACLG00000010374	cpsf4	88	95.455	ENSTTRG00000003007	CPSF4	79	95.455	Tursiops_truncatus
ENSACLG00000010374	cpsf4	79	93.220	ENSUAMG00000008051	CPSF4	73	91.579	Ursus_americanus
ENSACLG00000010374	cpsf4	100	79.623	ENSUMAG00000009474	CPSF4	100	80.658	Ursus_maritimus
ENSACLG00000010374	cpsf4	100	80.738	ENSVVUG00000008824	CPSF4	100	80.738	Vulpes_vulpes
ENSACLG00000010374	cpsf4	99	58.209	ENSXETG00000004641	cpsf4l	99	58.209	Xenopus_tropicalis
ENSACLG00000010374	cpsf4	100	78.853	ENSXETG00000009892	cpsf4	100	78.853	Xenopus_tropicalis
ENSACLG00000010374	cpsf4	100	88.679	ENSXCOG00000016040	cpsf4	100	88.679	Xiphophorus_couchianus
ENSACLG00000010374	cpsf4	100	89.057	ENSXMAG00000024670	cpsf4	100	89.057	Xiphophorus_maculatus