EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000012231 (Gene tree)
Gene ID: 113014427
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 19133 bases
Position: chr22:28136810-28155942
Accession: 113014427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000018140	CPSF_A	PF03178.15	1.2e-92	1	1
ENSACLP00000018300	CPSF_A	PF03178.15	1.1e-91	1	1
ENSACLP00000017896	CPSF_A	PF03178.15	3.6e-91	1	1
ENSACLP00000017959	CPSF_A	PF03178.15	3.7e-91	1	1
ENSACLP00000018043	CPSF_A	PF03178.15	3.7e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000018326	-	5227	-	ENSACLP00000017896	1426 (aa)	-	-
ENSACLT00000018389	-	5266	-	ENSACLP00000017959	1439 (aa)	-	-
ENSACLT00000018733	-	4152	-	ENSACLP00000018300	1383 (aa)	-	-
ENSACLT00000018572	-	5076	XM_026155957	ENSACLP00000018140	1483 (aa)	XP_026011742	-
ENSACLT00000018473	-	5168	-	ENSACLP00000018043	1439 (aa)	-	-

Gene Model

Click here to download ENSACLG00000012231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000012231's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000012231	cpsf1	99	78.536	ENSG00000071894	CPSF1	100	79.167	Homo_sapiens
ENSACLG00000012231	cpsf1	99	94.072	ENSAPOG00000019621	cpsf1	99	94.722	Acanthochromis_polyacanthus
ENSACLG00000012231	cpsf1	99	77.378	ENSAMEG00000005557	CPSF1	99	77.308	Ailuropoda_melanoleuca
ENSACLG00000012231	cpsf1	99	92.248	ENSACIG00000006112	cpsf1	99	92.334	Amphilophus_citrinellus
ENSACLG00000012231	cpsf1	99	91.286	ENSAOCG00000007120	cpsf1	99	91.263	Amphiprion_ocellaris
ENSACLG00000012231	cpsf1	99	92.416	ENSAPEG00000005755	cpsf1	99	92.224	Amphiprion_percula
ENSACLG00000012231	cpsf1	99	92.837	ENSATEG00000011097	cpsf1	99	93.634	Anabas_testudineus
ENSACLG00000012231	cpsf1	92	74.242	ENSACAG00000009655	CPSF1	100	73.983	Anolis_carolinensis
ENSACLG00000012231	cpsf1	99	78.466	ENSANAG00000036514	CPSF1	100	77.509	Aotus_nancymaae
ENSACLG00000012231	cpsf1	100	78.422	ENSAMXG00000008485	cpsf1	100	78.422	Astyanax_mexicanus
ENSACLG00000012231	cpsf1	99	77.547	ENSBTAG00000008355	CPSF1	100	77.630	Bos_taurus
ENSACLG00000012231	cpsf1	100	32.425	WBGene00022301	cpsf-1	99	41.408	Caenorhabditis_elegans
ENSACLG00000012231	cpsf1	99	78.762	ENSCJAG00000021421	CPSF1	100	77.509	Callithrix_jacchus
ENSACLG00000012231	cpsf1	99	78.632	ENSCAFG00000001600	CPSF1	100	77.865	Canis_familiaris
ENSACLG00000012231	cpsf1	99	78.632	ENSCAFG00020020821	CPSF1	100	77.056	Canis_lupus_dingo
ENSACLG00000012231	cpsf1	99	75.300	ENSCHIG00000015833	CPSF1	100	73.940	Capra_hircus
ENSACLG00000012231	cpsf1	99	79.199	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSACLG00000012231	cpsf1	99	78.099	ENSCAPG00000014921	CPSF1	98	78.169	Cavia_aperea
ENSACLG00000012231	cpsf1	99	77.762	ENSCPOG00000011448	CPSF1	100	76.332	Cavia_porcellus
ENSACLG00000012231	cpsf1	99	79.029	ENSCCAG00000037658	CPSF1	100	79.358	Cebus_capucinus
ENSACLG00000012231	cpsf1	99	78.466	ENSCATG00000037234	CPSF1	100	79.167	Cercocebus_atys
ENSACLG00000012231	cpsf1	99	79.225	ENSCLAG00000012166	CPSF1	100	77.770	Chinchilla_lanigera
ENSACLG00000012231	cpsf1	99	78.903	ENSCSAG00000008502	CPSF1	100	77.232	Chlorocebus_sabaeus
ENSACLG00000012231	cpsf1	100	78.828	ENSCPBG00000018910	CPSF1	98	78.828	Chrysemys_picta_bellii
ENSACLG00000012231	cpsf1	96	47.754	ENSCING00000000514	-	100	47.502	Ciona_intestinalis
ENSACLG00000012231	cpsf1	99	48.242	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSACLG00000012231	cpsf1	99	75.964	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSACLG00000012231	cpsf1	99	78.873	ENSCGRG00001016344	Cpsf1	100	77.216	Cricetulus_griseus_chok1gshd
ENSACLG00000012231	cpsf1	99	77.254	ENSCGRG00000003118	Cpsf1	100	75.554	Cricetulus_griseus_crigri
ENSACLG00000012231	cpsf1	100	86.625	ENSCSEG00000013464	cpsf1	99	89.635	Cynoglossus_semilaevis
ENSACLG00000012231	cpsf1	88	85.751	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSACLG00000012231	cpsf1	99	86.428	ENSDARG00000034178	cpsf1	99	86.357	Danio_rerio
ENSACLG00000012231	cpsf1	57	82.659	ENSDNOG00000043654	CPSF1	94	82.659	Dasypus_novemcinctus
ENSACLG00000012231	cpsf1	99	78.167	ENSDORG00000006278	Cpsf1	99	78.154	Dipodomys_ordii
ENSACLG00000012231	cpsf1	100	43.280	FBgn0024698	Cpsf160	100	43.107	Drosophila_melanogaster
ENSACLG00000012231	cpsf1	80	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSACLG00000012231	cpsf1	99	78.702	ENSEASG00005010774	CPSF1	100	77.471	Equus_asinus_asinus
ENSACLG00000012231	cpsf1	99	78.632	ENSECAG00000022209	CPSF1	100	77.402	Equus_caballus
ENSACLG00000012231	cpsf1	99	79.070	ENSEEUG00000000471	CPSF1	100	77.210	Erinaceus_europaeus
ENSACLG00000012231	cpsf1	99	86.732	ENSELUG00000012271	cpsf1	100	86.239	Esox_lucius
ENSACLG00000012231	cpsf1	99	79.225	ENSFDAG00000016060	CPSF1	100	77.824	Fukomys_damarensis
ENSACLG00000012231	cpsf1	100	85.943	ENSFHEG00000016801	cpsf1	99	87.125	Fundulus_heteroclitus
ENSACLG00000012231	cpsf1	99	85.945	ENSGMOG00000000796	cpsf1	99	86.085	Gadus_morhua
ENSACLG00000012231	cpsf1	95	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSACLG00000012231	cpsf1	99	88.936	ENSGACG00000008703	cpsf1	100	88.000	Gasterosteus_aculeatus
ENSACLG00000012231	cpsf1	99	77.474	ENSGAGG00000004276	CPSF1	98	80.750	Gopherus_agassizii
ENSACLG00000012231	cpsf1	99	78.662	ENSGGOG00000016185	CPSF1	100	79.167	Gorilla_gorilla
ENSACLG00000012231	cpsf1	100	95.854	ENSHBUG00000018900	cpsf1	100	95.854	Haplochromis_burtoni
ENSACLG00000012231	cpsf1	99	79.155	ENSHGLG00000016139	CPSF1	100	77.701	Heterocephalus_glaber_female
ENSACLG00000012231	cpsf1	99	79.085	ENSHGLG00100009750	CPSF1	100	77.632	Heterocephalus_glaber_male
ENSACLG00000012231	cpsf1	99	89.440	ENSHCOG00000018509	cpsf1	99	89.293	Hippocampus_comes
ENSACLG00000012231	cpsf1	99	82.688	ENSIPUG00000011259	cpsf1	99	82.209	Ictalurus_punctatus
ENSACLG00000012231	cpsf1	99	78.246	ENSSTOG00000009957	CPSF1	98	78.526	Ictidomys_tridecemlineatus
ENSACLG00000012231	cpsf1	100	77.971	ENSJJAG00000023002	Cpsf1	100	77.832	Jaculus_jaculus
ENSACLG00000012231	cpsf1	91	93.103	ENSKMAG00000001940	cpsf1	99	93.103	Kryptolebias_marmoratus
ENSACLG00000012231	cpsf1	99	91.237	ENSLBEG00000003601	cpsf1	99	91.352	Labrus_bergylta
ENSACLG00000012231	cpsf1	92	72.584	ENSLACG00000000233	CPSF1	91	78.806	Latimeria_chalumnae
ENSACLG00000012231	cpsf1	99	82.328	ENSLOCG00000008484	cpsf1	100	81.366	Lepisosteus_oculatus
ENSACLG00000012231	cpsf1	99	78.702	ENSLAFG00000022601	CPSF1	99	78.491	Loxodonta_africana
ENSACLG00000012231	cpsf1	99	78.536	ENSMFAG00000037013	CPSF1	100	79.167	Macaca_fascicularis
ENSACLG00000012231	cpsf1	99	78.536	ENSMMUG00000007380	CPSF1	100	79.167	Macaca_mulatta
ENSACLG00000012231	cpsf1	99	78.536	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSACLG00000012231	cpsf1	99	78.551	ENSMLEG00000043010	CPSF1	100	79.167	Mandrillus_leucophaeus
ENSACLG00000012231	cpsf1	99	94.034	ENSMAMG00000003803	cpsf1	99	94.106	Mastacembelus_armatus
ENSACLG00000012231	cpsf1	100	99.928	ENSMZEG00005001168	cpsf1	100	99.928	Maylandia_zebra
ENSACLG00000012231	cpsf1	99	79.055	ENSMAUG00000003601	Cpsf1	100	77.355	Mesocricetus_auratus
ENSACLG00000012231	cpsf1	99	78.732	ENSMICG00000015767	CPSF1	100	77.216	Microcebus_murinus
ENSACLG00000012231	cpsf1	100	77.355	ENSMOCG00000022758	Cpsf1	100	77.216	Microtus_ochrogaster
ENSACLG00000012231	cpsf1	100	89.735	ENSMMOG00000021245	cpsf1	100	89.525	Mola_mola
ENSACLG00000012231	cpsf1	99	79.563	ENSMODG00000010755	CPSF1	99	78.732	Monodelphis_domestica
ENSACLG00000012231	cpsf1	99	93.428	ENSMALG00000020545	cpsf1	99	93.686	Monopterus_albus
ENSACLG00000012231	cpsf1	99	79.014	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.632	Mus_caroli
ENSACLG00000012231	cpsf1	99	79.014	ENSMUSG00000034022	Cpsf1	100	77.632	Mus_musculus
ENSACLG00000012231	cpsf1	99	79.155	MGP_PahariEiJ_G0019946	Cpsf1	100	77.770	Mus_pahari
ENSACLG00000012231	cpsf1	99	79.085	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.701	Mus_spretus
ENSACLG00000012231	cpsf1	98	77.841	ENSMPUG00000006419	CPSF1	95	78.052	Mustela_putorius_furo
ENSACLG00000012231	cpsf1	99	79.014	ENSNGAG00000022460	Cpsf1	100	77.493	Nannospalax_galili
ENSACLG00000012231	cpsf1	100	89.574	ENSNBRG00000000813	cpsf1	100	89.800	Neolamprologus_brichardi
ENSACLG00000012231	cpsf1	81	86.624	ENSNLEG00000010633	-	94	86.624	Nomascus_leucogenys
ENSACLG00000012231	cpsf1	84	86.047	ENSMEUG00000014922	CPSF1	84	86.047	Notamacropus_eugenii
ENSACLG00000012231	cpsf1	63	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSACLG00000012231	cpsf1	99	79.437	ENSODEG00000013995	CPSF1	100	77.562	Octodon_degus
ENSACLG00000012231	cpsf1	99	96.129	ENSONIG00000007676	cpsf1	99	96.241	Oreochromis_niloticus
ENSACLG00000012231	cpsf1	61	77.143	ENSOANG00000010716	CPSF1	89	77.143	Ornithorhynchus_anatinus
ENSACLG00000012231	cpsf1	99	89.880	ENSORLG00000013544	cpsf1	99	89.842	Oryzias_latipes
ENSACLG00000012231	cpsf1	99	89.880	ENSORLG00020021693	cpsf1	99	89.911	Oryzias_latipes_hni
ENSACLG00000012231	cpsf1	99	89.880	ENSORLG00015009979	cpsf1	99	89.842	Oryzias_latipes_hsok
ENSACLG00000012231	cpsf1	99	90.446	ENSOMEG00000011849	cpsf1	99	90.460	Oryzias_melastigma
ENSACLG00000012231	cpsf1	99	79.099	ENSOGAG00000000315	CPSF1	100	77.509	Otolemur_garnettii
ENSACLG00000012231	cpsf1	99	78.677	ENSPPAG00000019280	CPSF1	100	80.543	Pan_paniscus
ENSACLG00000012231	cpsf1	99	77.317	ENSPTRG00000051253	-	100	80.543	Pan_troglodytes
ENSACLG00000012231	cpsf1	99	78.677	ENSPTRG00000049288	-	100	80.543	Pan_troglodytes
ENSACLG00000012231	cpsf1	99	78.536	ENSPANG00000015005	CPSF1	100	79.167	Papio_anubis
ENSACLG00000012231	cpsf1	99	86.086	ENSPKIG00000002582	cpsf1	100	86.095	Paramormyrops_kingsleyae
ENSACLG00000012231	cpsf1	99	79.704	ENSPCIG00000009035	CPSF1	100	77.893	Phascolarctos_cinereus
ENSACLG00000012231	cpsf1	99	89.689	ENSPFOG00000012870	cpsf1	99	90.261	Poecilia_formosa
ENSACLG00000012231	cpsf1	99	89.767	ENSPREG00000016307	cpsf1	99	90.199	Poecilia_reticulata
ENSACLG00000012231	cpsf1	99	71.941	ENSPPYG00000018973	CPSF1	100	70.194	Pongo_abelii
ENSACLG00000012231	cpsf1	93	84.659	ENSPCAG00000011541	CPSF1	93	84.659	Procavia_capensis
ENSACLG00000012231	cpsf1	99	75.581	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSACLG00000012231	cpsf1	90	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSACLG00000012231	cpsf1	100	99.790	ENSPNYG00000004906	cpsf1	100	99.790	Pundamilia_nyererei
ENSACLG00000012231	cpsf1	100	81.562	ENSPNAG00000024395	cpsf1	100	81.562	Pygocentrus_nattereri
ENSACLG00000012231	cpsf1	99	79.055	ENSRNOG00000030705	Cpsf1	100	77.670	Rattus_norvegicus
ENSACLG00000012231	cpsf1	99	78.607	ENSRBIG00000044907	CPSF1	100	79.630	Rhinopithecus_bieti
ENSACLG00000012231	cpsf1	99	78.677	ENSRROG00000044861	CPSF1	100	79.630	Rhinopithecus_roxellana
ENSACLG00000012231	cpsf1	99	78.692	ENSSBOG00000027177	CPSF1	99	78.762	Saimiri_boliviensis_boliviensis
ENSACLG00000012231	cpsf1	99	79.704	ENSSHAG00000006500	CPSF1	100	77.686	Sarcophilus_harrisii
ENSACLG00000012231	cpsf1	98	86.795	ENSSFOG00015004606	cpsf1	100	86.867	Scleropages_formosus
ENSACLG00000012231	cpsf1	99	91.955	ENSSMAG00000020547	cpsf1	99	92.603	Scophthalmus_maximus
ENSACLG00000012231	cpsf1	100	91.907	ENSSDUG00000001100	cpsf1	100	91.766	Seriola_dumerili
ENSACLG00000012231	cpsf1	100	91.766	ENSSLDG00000003619	cpsf1	100	92.048	Seriola_lalandi_dorsalis
ENSACLG00000012231	cpsf1	89	75.118	ENSSARG00000003643	CPSF1	92	75.118	Sorex_araneus
ENSACLG00000012231	cpsf1	99	80.788	ENSSPUG00000014396	CPSF1	99	80.718	Sphenodon_punctatus
ENSACLG00000012231	cpsf1	99	94.072	ENSSPAG00000005349	cpsf1	99	94.517	Stegastes_partitus
ENSACLG00000012231	cpsf1	99	77.856	ENSSSCG00000005906	CPSF1	100	76.332	Sus_scrofa
ENSACLG00000012231	cpsf1	99	90.992	ENSTRUG00000013134	cpsf1	99	90.852	Takifugu_rubripes
ENSACLG00000012231	cpsf1	99	88.593	ENSTNIG00000014027	cpsf1	99	88.851	Tetraodon_nigroviridis
ENSACLG00000012231	cpsf1	76	75.972	ENSTBEG00000001756	CPSF1	91	75.618	Tupaia_belangeri
ENSACLG00000012231	cpsf1	89	85.481	ENSTTRG00000001937	CPSF1	88	85.299	Tursiops_truncatus
ENSACLG00000012231	cpsf1	99	78.843	ENSUAMG00000006476	CPSF1	97	78.843	Ursus_americanus
ENSACLG00000012231	cpsf1	100	86.774	ENSXCOG00000003608	cpsf1	100	86.844	Xiphophorus_couchianus
ENSACLG00000012231	cpsf1	100	86.123	ENSXMAG00000005798	cpsf1	100	85.983	Xiphophorus_maculatus