EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000012622 (Gene tree)
Gene ID: 113033227
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 6746 bases
Position: chr12:24870497-24877242
Accession: 113033227
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000018529	PRP21_like_P	PF12230.8	7e-52	1	1
ENSACLP00000018529	Surp	PF01805.20	7.7e-46	1	2
ENSACLP00000018529	Surp	PF01805.20	7.7e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000018965	-	3556	-	ENSACLP00000018529	784 (aa)	XP_026042567	UPI00032A085A

Gene Model

Click here to download ENSACLG00000012622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000012622's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000012622	sf3a1	98	86.571	ENSG00000099995	SF3A1	100	84.383	Homo_sapiens
ENSACLG00000012622	sf3a1	100	96.565	ENSAPOG00000020465	sf3a1	100	96.565	Acanthochromis_polyacanthus
ENSACLG00000012622	sf3a1	99	85.917	ENSAMEG00000007737	SF3A1	100	84.145	Ailuropoda_melanoleuca
ENSACLG00000012622	sf3a1	100	97.074	ENSACIG00000020672	sf3a1	100	97.074	Amphilophus_citrinellus
ENSACLG00000012622	sf3a1	100	96.438	ENSAOCG00000003060	sf3a1	100	96.438	Amphiprion_ocellaris
ENSACLG00000012622	sf3a1	100	96.565	ENSAPEG00000010735	sf3a1	100	96.565	Amphiprion_percula
ENSACLG00000012622	sf3a1	97	94.771	ENSATEG00000021201	sf3a1	96	95.556	Anabas_testudineus
ENSACLG00000012622	sf3a1	96	85.865	ENSAPLG00000009057	SF3A1	100	84.891	Anas_platyrhynchos
ENSACLG00000012622	sf3a1	100	81.807	ENSACAG00000009415	SF3A1	100	81.931	Anolis_carolinensis
ENSACLG00000012622	sf3a1	99	85.403	ENSANAG00000032045	SF3A1	100	84.355	Aotus_nancymaae
ENSACLG00000012622	sf3a1	99	87.898	ENSAMXG00000005382	sf3a1	99	88.535	Astyanax_mexicanus
ENSACLG00000012622	sf3a1	99	85.531	ENSBTAG00000003390	SF3A1	100	84.355	Bos_taurus
ENSACLG00000012622	sf3a1	82	45.558	WBGene00004188	prp-21	90	44.717	Caenorhabditis_elegans
ENSACLG00000012622	sf3a1	99	85.275	ENSCJAG00000010370	SF3A1	100	84.383	Callithrix_jacchus
ENSACLG00000012622	sf3a1	99	85.403	ENSCAFG00000012559	SF3A1	100	84.355	Canis_familiaris
ENSACLG00000012622	sf3a1	99	85.403	ENSCAFG00020000838	SF3A1	100	84.355	Canis_lupus_dingo
ENSACLG00000012622	sf3a1	99	85.659	ENSCHIG00000018642	SF3A1	100	84.481	Capra_hircus
ENSACLG00000012622	sf3a1	99	85.917	ENSTSYG00000004739	SF3A1	100	84.355	Carlito_syrichta
ENSACLG00000012622	sf3a1	95	69.693	ENSCAPG00000015414	SF3A1	98	69.693	Cavia_aperea
ENSACLG00000012622	sf3a1	99	85.659	ENSCPOG00000014589	SF3A1	100	84.383	Cavia_porcellus
ENSACLG00000012622	sf3a1	99	85.403	ENSCCAG00000032006	SF3A1	100	84.355	Cebus_capucinus
ENSACLG00000012622	sf3a1	99	85.403	ENSCATG00000029241	SF3A1	100	84.355	Cercocebus_atys
ENSACLG00000012622	sf3a1	98	86.050	ENSCLAG00000006508	SF3A1	100	84.257	Chinchilla_lanigera
ENSACLG00000012622	sf3a1	98	86.180	ENSCSAG00000009470	SF3A1	100	84.383	Chlorocebus_sabaeus
ENSACLG00000012622	sf3a1	59	88.603	ENSCHOG00000005201	SF3A1	63	88.971	Choloepus_hoffmanni
ENSACLG00000012622	sf3a1	100	83.312	ENSCPBG00000007595	SF3A1	100	83.059	Chrysemys_picta_bellii
ENSACLG00000012622	sf3a1	97	52.163	ENSCING00000008526	-	66	58.095	Ciona_intestinalis
ENSACLG00000012622	sf3a1	97	50.450	ENSCSAVG00000005608	-	93	61.607	Ciona_savignyi
ENSACLG00000012622	sf3a1	98	86.180	ENSCANG00000033564	SF3A1	100	84.383	Colobus_angolensis_palliatus
ENSACLG00000012622	sf3a1	97	86.166	ENSCGRG00001008933	Sf3a1	100	83.879	Cricetulus_griseus_chok1gshd
ENSACLG00000012622	sf3a1	97	86.166	ENSCGRG00000006127	Sf3a1	100	83.879	Cricetulus_griseus_crigri
ENSACLG00000012622	sf3a1	100	91.105	ENSCSEG00000010792	sf3a1	100	90.216	Cynoglossus_semilaevis
ENSACLG00000012622	sf3a1	100	93.139	ENSCVAG00000004560	sf3a1	100	92.249	Cyprinodon_variegatus
ENSACLG00000012622	sf3a1	100	87.150	ENSDARG00000041887	sf3a1	100	90.857	Danio_rerio
ENSACLG00000012622	sf3a1	99	85.696	ENSDNOG00000010629	SF3A1	98	84.157	Dasypus_novemcinctus
ENSACLG00000012622	sf3a1	99	85.787	ENSDORG00000005613	Sf3a1	100	84.355	Dipodomys_ordii
ENSACLG00000012622	sf3a1	83	61.321	FBgn0266917	Sf3a1	84	59.640	Drosophila_melanogaster
ENSACLG00000012622	sf3a1	85	85.757	ENSETEG00000017194	SF3A1	95	86.057	Echinops_telfairi
ENSACLG00000012622	sf3a1	98	67.034	ENSEBUG00000001285	sf3a1	96	68.773	Eptatretus_burgeri
ENSACLG00000012622	sf3a1	98	86.180	ENSEASG00005010254	SF3A1	100	84.383	Equus_asinus_asinus
ENSACLG00000012622	sf3a1	98	86.180	ENSECAG00000023962	SF3A1	100	84.383	Equus_caballus
ENSACLG00000012622	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	81	88.525	Erinaceus_europaeus
ENSACLG00000012622	sf3a1	100	86.439	ENSELUG00000022578	sf3a1	100	86.439	Esox_lucius
ENSACLG00000012622	sf3a1	99	85.275	ENSFCAG00000011932	SF3A1	100	84.230	Felis_catus
ENSACLG00000012622	sf3a1	96	85.450	ENSFALG00000006944	SF3A1	100	83.586	Ficedula_albicollis
ENSACLG00000012622	sf3a1	99	85.788	ENSFDAG00000009560	SF3A1	100	84.230	Fukomys_damarensis
ENSACLG00000012622	sf3a1	100	93.266	ENSFHEG00000010866	sf3a1	100	92.884	Fundulus_heteroclitus
ENSACLG00000012622	sf3a1	100	87.500	ENSGMOG00000016024	sf3a1	100	86.752	Gadus_morhua
ENSACLG00000012622	sf3a1	96	86.376	ENSGALG00000007937	SF3A1	100	83.965	Gallus_gallus
ENSACLG00000012622	sf3a1	100	93.266	ENSGAFG00000009111	sf3a1	100	92.376	Gambusia_affinis
ENSACLG00000012622	sf3a1	100	90.000	ENSGACG00000011893	sf3a1	100	89.494	Gasterosteus_aculeatus
ENSACLG00000012622	sf3a1	96	82.850	ENSGAGG00000000762	SF3A1	99	82.586	Gopherus_agassizii
ENSACLG00000012622	sf3a1	98	86.571	ENSGGOG00000012631	SF3A1	100	84.383	Gorilla_gorilla
ENSACLG00000012622	sf3a1	100	99.872	ENSHBUG00000015795	sf3a1	100	99.872	Haplochromis_burtoni
ENSACLG00000012622	sf3a1	99	85.275	ENSHGLG00000007907	SF3A1	100	84.230	Heterocephalus_glaber_female
ENSACLG00000012622	sf3a1	99	85.275	ENSHGLG00100013799	SF3A1	100	84.230	Heterocephalus_glaber_male
ENSACLG00000012622	sf3a1	100	90.318	ENSHCOG00000015423	sf3a1	100	89.045	Hippocampus_comes
ENSACLG00000012622	sf3a1	98	85.344	ENSIPUG00000002470	sf3a1	99	85.214	Ictalurus_punctatus
ENSACLG00000012622	sf3a1	99	85.275	ENSSTOG00000013892	SF3A1	100	84.635	Ictidomys_tridecemlineatus
ENSACLG00000012622	sf3a1	99	85.788	ENSJJAG00000022566	Sf3a1	100	84.125	Jaculus_jaculus
ENSACLG00000012622	sf3a1	100	92.621	ENSKMAG00000002400	sf3a1	100	92.239	Kryptolebias_marmoratus
ENSACLG00000012622	sf3a1	100	93.121	ENSLBEG00000022974	sf3a1	100	92.357	Labrus_bergylta
ENSACLG00000012622	sf3a1	100	83.671	ENSLACG00000003565	SF3A1	100	82.911	Latimeria_chalumnae
ENSACLG00000012622	sf3a1	100	87.706	ENSLOCG00000008251	sf3a1	99	87.579	Lepisosteus_oculatus
ENSACLG00000012622	sf3a1	98	56.394	ENSLAFG00000026032	-	97	55.471	Loxodonta_africana
ENSACLG00000012622	sf3a1	99	85.787	ENSLAFG00000000448	SF3A1	100	84.731	Loxodonta_africana
ENSACLG00000012622	sf3a1	98	86.050	ENSMFAG00000031979	SF3A1	100	84.257	Macaca_fascicularis
ENSACLG00000012622	sf3a1	98	86.050	ENSMMUG00000005547	SF3A1	100	84.257	Macaca_mulatta
ENSACLG00000012622	sf3a1	98	86.180	ENSMNEG00000037229	SF3A1	100	84.383	Macaca_nemestrina
ENSACLG00000012622	sf3a1	98	86.180	ENSMLEG00000041908	SF3A1	100	84.383	Mandrillus_leucophaeus
ENSACLG00000012622	sf3a1	99	93.470	ENSMAMG00000006460	sf3a1	96	93.515	Mastacembelus_armatus
ENSACLG00000012622	sf3a1	100	100.000	ENSMZEG00005009633	sf3a1	100	100.000	Maylandia_zebra
ENSACLG00000012622	sf3a1	96	86.376	ENSMGAG00000001330	SF3A1	100	85.071	Meleagris_gallopavo
ENSACLG00000012622	sf3a1	93	82.128	ENSMAUG00000020317	Sf3a1	100	78.327	Mesocricetus_auratus
ENSACLG00000012622	sf3a1	99	85.531	ENSMICG00000010038	SF3A1	100	84.355	Microcebus_murinus
ENSACLG00000012622	sf3a1	99	84.891	ENSMOCG00000008438	Sf3a1	100	83.879	Microtus_ochrogaster
ENSACLG00000012622	sf3a1	100	91.210	ENSMMOG00000015588	sf3a1	99	90.318	Mola_mola
ENSACLG00000012622	sf3a1	99	84.170	ENSMODG00000009270	SF3A1	100	84.111	Monodelphis_domestica
ENSACLG00000012622	sf3a1	100	92.884	ENSMALG00000000148	sf3a1	100	93.647	Monopterus_albus
ENSACLG00000012622	sf3a1	99	84.942	MGP_CAROLIEiJ_G0016029	Sf3a1	99	84.411	Mus_caroli
ENSACLG00000012622	sf3a1	99	84.942	ENSMUSG00000002129	Sf3a1	99	84.411	Mus_musculus
ENSACLG00000012622	sf3a1	99	84.685	MGP_PahariEiJ_G0016862	Sf3a1	99	84.284	Mus_pahari
ENSACLG00000012622	sf3a1	99	84.942	MGP_SPRETEiJ_G0016870	Sf3a1	99	84.411	Mus_spretus
ENSACLG00000012622	sf3a1	99	85.403	ENSMPUG00000013144	SF3A1	100	84.355	Mustela_putorius_furo
ENSACLG00000012622	sf3a1	99	85.275	ENSMLUG00000002139	SF3A1	100	84.383	Myotis_lucifugus
ENSACLG00000012622	sf3a1	99	85.531	ENSNGAG00000016977	Sf3a1	100	83.980	Nannospalax_galili
ENSACLG00000012622	sf3a1	100	98.855	ENSNBRG00000016642	sf3a1	100	98.855	Neolamprologus_brichardi
ENSACLG00000012622	sf3a1	98	86.180	ENSNLEG00000003686	SF3A1	100	84.383	Nomascus_leucogenys
ENSACLG00000012622	sf3a1	94	76.735	ENSMEUG00000008741	SF3A1	100	75.789	Notamacropus_eugenii
ENSACLG00000012622	sf3a1	99	86.434	ENSOPRG00000016636	SF3A1	100	84.761	Ochotona_princeps
ENSACLG00000012622	sf3a1	98	86.068	ENSODEG00000002571	SF3A1	100	84.363	Octodon_degus
ENSACLG00000012622	sf3a1	100	99.108	ENSONIG00000010848	sf3a1	100	99.108	Oreochromis_niloticus
ENSACLG00000012622	sf3a1	98	86.180	ENSOCUG00000007633	SF3A1	100	84.383	Oryctolagus_cuniculus
ENSACLG00000012622	sf3a1	96	92.154	ENSORLG00000013050	sf3a1	99	92.287	Oryzias_latipes
ENSACLG00000012622	sf3a1	99	90.641	ENSORLG00020003236	sf3a1	97	90.310	Oryzias_latipes_hni
ENSACLG00000012622	sf3a1	100	91.975	ENSORLG00015017411	sf3a1	100	92.229	Oryzias_latipes_hsok
ENSACLG00000012622	sf3a1	100	93.376	ENSOMEG00000013362	sf3a1	100	92.357	Oryzias_melastigma
ENSACLG00000012622	sf3a1	99	85.917	ENSOGAG00000012931	SF3A1	100	84.355	Otolemur_garnettii
ENSACLG00000012622	sf3a1	99	84.251	ENSOARG00000006849	SF3A1	100	82.728	Ovis_aries
ENSACLG00000012622	sf3a1	98	85.789	ENSPPAG00000041790	SF3A1	100	83.627	Pan_paniscus
ENSACLG00000012622	sf3a1	99	85.275	ENSPPRG00000004391	SF3A1	100	84.230	Panthera_pardus
ENSACLG00000012622	sf3a1	99	85.659	ENSPTIG00000000844	SF3A1	99	85.788	Panthera_tigris_altaica
ENSACLG00000012622	sf3a1	98	86.571	ENSPTRG00000014240	SF3A1	100	84.383	Pan_troglodytes
ENSACLG00000012622	sf3a1	98	86.180	ENSPANG00000020772	SF3A1	100	84.383	Papio_anubis
ENSACLG00000012622	sf3a1	82	89.011	ENSPSIG00000012803	SF3A1	98	89.011	Pelodiscus_sinensis
ENSACLG00000012622	sf3a1	97	92.267	ENSPMGG00000023096	sf3a1	100	91.219	Periophthalmus_magnuspinnatus
ENSACLG00000012622	sf3a1	97	86.298	ENSPEMG00000009494	Sf3a1	100	84.005	Peromyscus_maniculatus_bairdii
ENSACLG00000012622	sf3a1	69	77.514	ENSPMAG00000007139	-	93	76.417	Petromyzon_marinus
ENSACLG00000012622	sf3a1	98	85.901	ENSPCIG00000022692	SF3A1	100	84.237	Phascolarctos_cinereus
ENSACLG00000012622	sf3a1	100	84.204	ENSPFOG00000016768	sf3a1	100	82.930	Poecilia_formosa
ENSACLG00000012622	sf3a1	100	94.155	ENSPLAG00000017268	sf3a1	100	93.266	Poecilia_latipinna
ENSACLG00000012622	sf3a1	96	94.578	ENSPMEG00000019811	sf3a1	100	92.922	Poecilia_mexicana
ENSACLG00000012622	sf3a1	100	93.901	ENSPREG00000010347	sf3a1	100	93.139	Poecilia_reticulata
ENSACLG00000012622	sf3a1	98	86.180	ENSPPYG00000011707	SF3A1	100	84.383	Pongo_abelii
ENSACLG00000012622	sf3a1	58	85.537	ENSPCAG00000003266	SF3A1	57	85.537	Procavia_capensis
ENSACLG00000012622	sf3a1	99	85.275	ENSPCOG00000026630	SF3A1	100	84.105	Propithecus_coquereli
ENSACLG00000012622	sf3a1	95	85.791	ENSPVAG00000017719	SF3A1	94	85.925	Pteropus_vampyrus
ENSACLG00000012622	sf3a1	100	99.617	ENSPNYG00000018706	sf3a1	100	99.617	Pundamilia_nyererei
ENSACLG00000012622	sf3a1	99	87.643	ENSPNAG00000003721	sf3a1	99	87.771	Pygocentrus_nattereri
ENSACLG00000012622	sf3a1	98	85.233	ENSRNOG00000005218	Sf3a1	99	84.071	Rattus_norvegicus
ENSACLG00000012622	sf3a1	98	86.180	ENSRBIG00000032167	SF3A1	100	84.383	Rhinopithecus_bieti
ENSACLG00000012622	sf3a1	98	86.180	ENSRROG00000044908	SF3A1	100	84.383	Rhinopithecus_roxellana
ENSACLG00000012622	sf3a1	93	86.512	ENSSBOG00000021960	SF3A1	98	86.957	Saimiri_boliviensis_boliviensis
ENSACLG00000012622	sf3a1	100	81.449	ENSSHAG00000003666	SF3A1	99	82.211	Sarcophilus_harrisii
ENSACLG00000012622	sf3a1	100	89.001	ENSSFOG00015004579	sf3a1	100	89.886	Scleropages_formosus
ENSACLG00000012622	sf3a1	100	91.083	ENSSMAG00000004275	sf3a1	100	89.936	Scophthalmus_maximus
ENSACLG00000012622	sf3a1	100	95.924	ENSSDUG00000022219	sf3a1	100	94.650	Seriola_dumerili
ENSACLG00000012622	sf3a1	100	95.924	ENSSLDG00000012642	sf3a1	100	94.650	Seriola_lalandi_dorsalis
ENSACLG00000012622	sf3a1	98	83.572	ENSSARG00000005960	SF3A1	99	82.946	Sorex_araneus
ENSACLG00000012622	sf3a1	97	85.026	ENSSPUG00000018863	SF3A1	100	82.522	Sphenodon_punctatus
ENSACLG00000012622	sf3a1	100	96.561	ENSSPAG00000011856	sf3a1	100	96.561	Stegastes_partitus
ENSACLG00000012622	sf3a1	99	85.531	ENSSSCG00000010002	SF3A1	100	84.481	Sus_scrofa
ENSACLG00000012622	sf3a1	96	85.884	ENSTGUG00000010547	SF3A1	99	86.031	Taeniopygia_guttata
ENSACLG00000012622	sf3a1	100	89.682	ENSTRUG00000006118	sf3a1	100	87.771	Takifugu_rubripes
ENSACLG00000012622	sf3a1	62	88.060	ENSTNIG00000005713	sf3a1	88	88.496	Tetraodon_nigroviridis
ENSACLG00000012622	sf3a1	99	78.745	ENSTBEG00000012771	SF3A1	100	77.834	Tupaia_belangeri
ENSACLG00000012622	sf3a1	99	85.422	ENSTTRG00000001535	SF3A1	100	84.375	Tursiops_truncatus
ENSACLG00000012622	sf3a1	99	83.228	ENSUAMG00000006750	SF3A1	99	83.354	Ursus_americanus
ENSACLG00000012622	sf3a1	99	85.917	ENSUMAG00000016665	SF3A1	99	85.313	Ursus_maritimus
ENSACLG00000012622	sf3a1	99	85.403	ENSVVUG00000003075	SF3A1	100	84.355	Vulpes_vulpes
ENSACLG00000012622	sf3a1	100	79.523	ENSXETG00000016144	sf3a1	96	84.615	Xenopus_tropicalis
ENSACLG00000012622	sf3a1	100	93.520	ENSXCOG00000015653	sf3a1	100	92.630	Xiphophorus_couchianus
ENSACLG00000012622	sf3a1	100	93.774	ENSXMAG00000002753	sf3a1	100	92.884	Xiphophorus_maculatus