EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000012696 (Gene tree)
Gene ID: 113008616
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 92052 bases
Position: chr17:19424822-19516873
Accession: 113008616
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000018593	Upf2	PF04050.14	3.2e-31	1	1
ENSACLP00000018622	Upf2	PF04050.14	3.4e-31	1	1
ENSACLP00000018622	MIF4G	PF02854.19	2.3e-80	1	3
ENSACLP00000018622	MIF4G	PF02854.19	2.3e-80	2	3
ENSACLP00000018622	MIF4G	PF02854.19	2.3e-80	3	3
ENSACLP00000018593	MIF4G	PF02854.19	2.6e-80	1	3
ENSACLP00000018593	MIF4G	PF02854.19	2.6e-80	2	3
ENSACLP00000018593	MIF4G	PF02854.19	2.6e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000019029	UPF2-201	4268	-	ENSACLP00000018593	1304 (aa)	-	-
ENSACLT00000019058	UPF2-202	8051	-	ENSACLP00000018622	1275 (aa)	XP_026001926	UPI000329F28E

Gene Model

Click here to download ENSACLG00000012696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000012696's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000012696	UPF2	100	82.619	ENSG00000151461	UPF2	100	80.904	Homo_sapiens
ENSACLG00000012696	UPF2	99	90.290	ENSAPOG00000015837	UPF2	100	90.282	Acanthochromis_polyacanthus
ENSACLG00000012696	UPF2	100	83.073	ENSAMEG00000004586	UPF2	100	81.279	Ailuropoda_melanoleuca
ENSACLG00000012696	UPF2	99	98.350	ENSACIG00000018078	UPF2	100	98.350	Amphilophus_citrinellus
ENSACLG00000012696	UPF2	100	96.635	ENSAOCG00000016766	UPF2	100	96.635	Amphiprion_ocellaris
ENSACLG00000012696	UPF2	100	96.714	ENSAPEG00000019084	UPF2	100	96.714	Amphiprion_percula
ENSACLG00000012696	UPF2	100	96.870	ENSATEG00000021677	UPF2	99	96.870	Anabas_testudineus
ENSACLG00000012696	UPF2	100	78.710	ENSAPLG00000010287	UPF2	90	83.434	Anas_platyrhynchos
ENSACLG00000012696	UPF2	100	82.917	ENSACAG00000009259	UPF2	100	82.995	Anolis_carolinensis
ENSACLG00000012696	UPF2	91	79.177	ENSANAG00000028451	UPF2	93	79.249	Aotus_nancymaae
ENSACLG00000012696	UPF2	99	89.367	ENSAMXG00000013700	UPF2	99	89.289	Astyanax_mexicanus
ENSACLG00000012696	UPF2	100	83.073	ENSBTAG00000000288	UPF2	100	81.357	Bos_taurus
ENSACLG00000012696	UPF2	100	82.371	ENSCJAG00000020685	UPF2	100	81.045	Callithrix_jacchus
ENSACLG00000012696	UPF2	100	83.151	ENSCAFG00000004839	UPF2	100	81.357	Canis_familiaris
ENSACLG00000012696	UPF2	95	86.735	ENSCAFG00020005882	UPF2	99	87.755	Canis_lupus_dingo
ENSACLG00000012696	UPF2	100	83.229	ENSCHIG00000020359	UPF2	100	81.357	Capra_hircus
ENSACLG00000012696	UPF2	100	82.839	ENSTSYG00000000935	UPF2	97	86.932	Carlito_syrichta
ENSACLG00000012696	UPF2	91	75.086	ENSCAPG00000016658	UPF2	95	74.744	Cavia_aperea
ENSACLG00000012696	UPF2	99	79.874	ENSCPOG00000008809	UPF2	100	79.167	Cavia_porcellus
ENSACLG00000012696	UPF2	100	76.168	ENSCCAG00000035991	UPF2	100	74.922	Cebus_capucinus
ENSACLG00000012696	UPF2	100	82.775	ENSCATG00000032679	UPF2	100	81.060	Cercocebus_atys
ENSACLG00000012696	UPF2	100	81.889	ENSCLAG00000011434	UPF2	100	81.187	Chinchilla_lanigera
ENSACLG00000012696	UPF2	100	82.775	ENSCSAG00000013372	UPF2	100	81.060	Chlorocebus_sabaeus
ENSACLG00000012696	UPF2	79	88.914	ENSCHOG00000000422	UPF2	81	88.914	Choloepus_hoffmanni
ENSACLG00000012696	UPF2	99	81.548	ENSCPBG00000027823	UPF2	100	81.016	Chrysemys_picta_bellii
ENSACLG00000012696	UPF2	79	49.951	ENSCSAVG00000007772	-	99	48.826	Ciona_savignyi
ENSACLG00000012696	UPF2	99	77.614	ENSCANG00000040396	UPF2	100	76.209	Colobus_angolensis_palliatus
ENSACLG00000012696	UPF2	100	82.436	ENSCGRG00001019347	Upf2	100	80.562	Cricetulus_griseus_chok1gshd
ENSACLG00000012696	UPF2	100	82.436	ENSCGRG00000017993	Upf2	100	80.562	Cricetulus_griseus_crigri
ENSACLG00000012696	UPF2	99	85.781	ENSCSEG00000003520	UPF2	99	85.400	Cynoglossus_semilaevis
ENSACLG00000012696	UPF2	99	94.243	ENSCVAG00000006167	UPF2	100	93.691	Cyprinodon_variegatus
ENSACLG00000012696	UPF2	100	82.917	ENSDNOG00000018160	UPF2	100	81.045	Dasypus_novemcinctus
ENSACLG00000012696	UPF2	100	82.683	ENSDORG00000002478	Upf2	100	80.889	Dipodomys_ordii
ENSACLG00000012696	UPF2	73	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSACLG00000012696	UPF2	64	73.826	ENSEBUG00000012448	-	93	68.311	Eptatretus_burgeri
ENSACLG00000012696	UPF2	100	82.201	ENSEASG00005019274	UPF2	100	81.499	Equus_asinus_asinus
ENSACLG00000012696	UPF2	100	82.201	ENSECAG00000017022	UPF2	100	81.499	Equus_caballus
ENSACLG00000012696	UPF2	82	75.157	ENSEEUG00000007819	UPF2	74	75.441	Erinaceus_europaeus
ENSACLG00000012696	UPF2	99	88.768	ENSELUG00000012014	UPF2	100	89.236	Esox_lucius
ENSACLG00000012696	UPF2	100	85.635	ENSFCAG00000005785	UPF2	100	81.201	Felis_catus
ENSACLG00000012696	UPF2	100	83.476	ENSFALG00000001889	UPF2	98	81.684	Ficedula_albicollis
ENSACLG00000012696	UPF2	100	81.421	ENSFDAG00000014348	UPF2	100	80.562	Fukomys_damarensis
ENSACLG00000012696	UPF2	99	94.401	ENSFHEG00000009826	UPF2	100	94.006	Fundulus_heteroclitus
ENSACLG00000012696	UPF2	91	90.061	ENSGMOG00000005557	UPF2	100	88.290	Gadus_morhua
ENSACLG00000012696	UPF2	100	84.412	ENSGALG00000033772	UPF2	100	82.541	Gallus_gallus
ENSACLG00000012696	UPF2	100	93.505	ENSGAFG00000020867	UPF2	100	93.114	Gambusia_affinis
ENSACLG00000012696	UPF2	99	92.974	ENSGACG00000001080	UPF2	100	93.521	Gasterosteus_aculeatus
ENSACLG00000012696	UPF2	100	82.619	ENSGAGG00000002700	UPF2	100	80.841	Gopherus_agassizii
ENSACLG00000012696	UPF2	100	82.619	ENSGGOG00000001479	UPF2	100	80.904	Gorilla_gorilla
ENSACLG00000012696	UPF2	100	99.686	ENSHBUG00000004249	UPF2	100	99.843	Haplochromis_burtoni
ENSACLG00000012696	UPF2	99	72.770	ENSHGLG00000003822	-	99	72.848	Heterocephalus_glaber_female
ENSACLG00000012696	UPF2	100	81.499	ENSHGLG00000015176	-	100	80.796	Heterocephalus_glaber_female
ENSACLG00000012696	UPF2	99	79.203	ENSHGLG00100010036	UPF2	100	78.013	Heterocephalus_glaber_male
ENSACLG00000012696	UPF2	100	91.115	ENSHCOG00000004025	UPF2	99	91.037	Hippocampus_comes
ENSACLG00000012696	UPF2	100	87.822	ENSIPUG00000015524	UPF2	100	85.781	Ictalurus_punctatus
ENSACLG00000012696	UPF2	100	82.839	ENSSTOG00000013075	UPF2	100	80.889	Ictidomys_tridecemlineatus
ENSACLG00000012696	UPF2	100	79.781	ENSJJAG00000004913	Upf2	100	80.718	Jaculus_jaculus
ENSACLG00000012696	UPF2	99	94.243	ENSKMAG00000001071	UPF2	100	94.243	Kryptolebias_marmoratus
ENSACLG00000012696	UPF2	80	92.458	ENSLBEG00000000728	-	94	92.368	Labrus_bergylta
ENSACLG00000012696	UPF2	100	95.305	ENSLBEG00000016394	-	99	95.305	Labrus_bergylta
ENSACLG00000012696	UPF2	99	77.379	ENSLACG00000015945	UPF2	100	77.613	Latimeria_chalumnae
ENSACLG00000012696	UPF2	99	88.661	ENSLOCG00000015698	UPF2	100	88.346	Lepisosteus_oculatus
ENSACLG00000012696	UPF2	100	82.775	ENSMFAG00000043865	UPF2	100	81.060	Macaca_fascicularis
ENSACLG00000012696	UPF2	100	82.775	ENSMMUG00000008241	UPF2	100	81.060	Macaca_mulatta
ENSACLG00000012696	UPF2	80	83.528	ENSMNEG00000008062	UPF2	99	81.189	Macaca_nemestrina
ENSACLG00000012696	UPF2	99	80.733	ENSMLEG00000036120	UPF2	100	78.923	Mandrillus_leucophaeus
ENSACLG00000012696	UPF2	100	96.635	ENSMAMG00000018276	UPF2	100	96.635	Mastacembelus_armatus
ENSACLG00000012696	UPF2	100	100.000	ENSMZEG00005021595	UPF2	100	100.000	Maylandia_zebra
ENSACLG00000012696	UPF2	99	83.947	ENSMGAG00000004573	UPF2	99	82.275	Meleagris_gallopavo
ENSACLG00000012696	UPF2	100	80.406	ENSMAUG00000016512	Upf2	100	78.532	Mesocricetus_auratus
ENSACLG00000012696	UPF2	95	86.224	ENSMICG00000001716	UPF2	99	87.245	Microcebus_murinus
ENSACLG00000012696	UPF2	100	81.406	ENSMOCG00000008263	Upf2	100	80.938	Microtus_ochrogaster
ENSACLG00000012696	UPF2	99	89.498	ENSMMOG00000006528	UPF2	100	89.342	Mola_mola
ENSACLG00000012696	UPF2	100	81.201	ENSMODG00000016794	UPF2	100	81.435	Monodelphis_domestica
ENSACLG00000012696	UPF2	99	94.749	ENSMALG00000002663	UPF2	100	94.749	Monopterus_albus
ENSACLG00000012696	UPF2	100	82.279	MGP_CAROLIEiJ_G0023157	Upf2	99	84.696	Mus_caroli
ENSACLG00000012696	UPF2	100	82.592	ENSMUSG00000043241	Upf2	99	83.962	Mus_musculus
ENSACLG00000012696	UPF2	100	82.670	MGP_PahariEiJ_G0019217	Upf2	100	83.962	Mus_pahari
ENSACLG00000012696	UPF2	100	82.826	MGP_SPRETEiJ_G0024075	Upf2	100	83.962	Mus_spretus
ENSACLG00000012696	UPF2	100	82.995	ENSMPUG00000001064	UPF2	100	81.357	Mustela_putorius_furo
ENSACLG00000012696	UPF2	99	82.449	ENSMLUG00000000228	UPF2	100	80.685	Myotis_lucifugus
ENSACLG00000012696	UPF2	100	99.843	ENSNBRG00000013629	UPF2	100	99.843	Neolamprologus_brichardi
ENSACLG00000012696	UPF2	100	82.619	ENSNLEG00000012058	UPF2	100	80.904	Nomascus_leucogenys
ENSACLG00000012696	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSACLG00000012696	UPF2	100	81.733	ENSODEG00000001290	UPF2	100	80.874	Octodon_degus
ENSACLG00000012696	UPF2	100	99.451	ENSONIG00000017991	UPF2	100	99.451	Oreochromis_niloticus
ENSACLG00000012696	UPF2	99	81.712	ENSOCUG00000006230	UPF2	100	80.856	Oryctolagus_cuniculus
ENSACLG00000012696	UPF2	100	92.572	ENSORLG00000017189	UPF2	100	92.729	Oryzias_latipes
ENSACLG00000012696	UPF2	100	92.651	ENSORLG00020005969	UPF2	100	92.807	Oryzias_latipes_hni
ENSACLG00000012696	UPF2	100	92.651	ENSORLG00015005713	UPF2	100	92.807	Oryzias_latipes_hsok
ENSACLG00000012696	UPF2	99	89.577	ENSOMEG00000023420	UPF2	98	89.498	Oryzias_melastigma
ENSACLG00000012696	UPF2	100	83.229	ENSOGAG00000005796	UPF2	100	80.967	Otolemur_garnettii
ENSACLG00000012696	UPF2	100	83.100	ENSOARG00000014587	UPF2	100	81.231	Ovis_aries
ENSACLG00000012696	UPF2	99	80.109	ENSPPAG00000037953	UPF2	100	78.298	Pan_paniscus
ENSACLG00000012696	UPF2	100	82.995	ENSPPRG00000000690	UPF2	100	81.201	Panthera_pardus
ENSACLG00000012696	UPF2	100	82.995	ENSPTIG00000008867	UPF2	100	81.201	Panthera_tigris_altaica
ENSACLG00000012696	UPF2	100	82.619	ENSPTRG00000002291	UPF2	100	80.904	Pan_troglodytes
ENSACLG00000012696	UPF2	100	82.775	ENSPANG00000023399	UPF2	100	81.060	Papio_anubis
ENSACLG00000012696	UPF2	100	88.447	ENSPKIG00000025502	UPF2	100	86.885	Paramormyrops_kingsleyae
ENSACLG00000012696	UPF2	59	81.579	ENSPSIG00000015158	UPF2	95	81.447	Pelodiscus_sinensis
ENSACLG00000012696	UPF2	99	90.047	ENSPMGG00000005259	UPF2	100	90.047	Periophthalmus_magnuspinnatus
ENSACLG00000012696	UPF2	93	76.945	ENSPEMG00000015731	Upf2	99	70.119	Peromyscus_maniculatus_bairdii
ENSACLG00000012696	UPF2	100	83.385	ENSPCIG00000006656	UPF2	100	81.513	Phascolarctos_cinereus
ENSACLG00000012696	UPF2	100	93.897	ENSPFOG00000017118	UPF2	100	93.505	Poecilia_formosa
ENSACLG00000012696	UPF2	100	93.897	ENSPLAG00000005094	UPF2	100	93.505	Poecilia_latipinna
ENSACLG00000012696	UPF2	100	93.818	ENSPMEG00000017009	UPF2	100	93.427	Poecilia_mexicana
ENSACLG00000012696	UPF2	99	92.163	ENSPREG00000021880	UPF2	100	92.163	Poecilia_reticulata
ENSACLG00000012696	UPF2	66	84.935	ENSPPYG00000002089	-	100	85.172	Pongo_abelii
ENSACLG00000012696	UPF2	95	81.314	ENSPCAG00000000684	UPF2	100	70.983	Procavia_capensis
ENSACLG00000012696	UPF2	99	80.234	ENSPCOG00000021656	UPF2	100	78.594	Propithecus_coquereli
ENSACLG00000012696	UPF2	100	76.539	ENSPVAG00000017286	UPF2	100	74.669	Pteropus_vampyrus
ENSACLG00000012696	UPF2	99	97.251	ENSPNYG00000017096	UPF2	100	97.251	Pundamilia_nyererei
ENSACLG00000012696	UPF2	100	89.478	ENSPNAG00000009357	UPF2	100	89.712	Pygocentrus_nattereri
ENSACLG00000012696	UPF2	99	78.755	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSACLG00000012696	UPF2	99	81.562	ENSRBIG00000037780	UPF2	100	80.141	Rhinopithecus_bieti
ENSACLG00000012696	UPF2	100	82.541	ENSRROG00000043547	UPF2	100	80.748	Rhinopithecus_roxellana
ENSACLG00000012696	UPF2	100	82.137	ENSSBOG00000020012	UPF2	100	80.733	Saimiri_boliviensis_boliviensis
ENSACLG00000012696	UPF2	100	87.354	ENSSFOG00015023788	upf2	100	87.354	Scleropages_formosus
ENSACLG00000012696	UPF2	90	92.028	ENSSMAG00000007637	UPF2	100	91.693	Scophthalmus_maximus
ENSACLG00000012696	UPF2	100	96.401	ENSSDUG00000017244	UPF2	99	96.401	Seriola_dumerili
ENSACLG00000012696	UPF2	99	92.947	ENSSLDG00000016866	UPF2	100	92.555	Seriola_lalandi_dorsalis
ENSACLG00000012696	UPF2	100	79.813	ENSSARG00000008615	UPF2	100	80.125	Sorex_araneus
ENSACLG00000012696	UPF2	99	80.874	ENSSPUG00000014544	UPF2	99	80.718	Sphenodon_punctatus
ENSACLG00000012696	UPF2	68	84.800	ENSSSCG00000011117	-	99	85.029	Sus_scrofa
ENSACLG00000012696	UPF2	99	83.047	ENSTGUG00000002163	-	100	81.406	Taeniopygia_guttata
ENSACLG00000012696	UPF2	100	93.740	ENSTRUG00000007519	UPF2	99	93.740	Takifugu_rubripes
ENSACLG00000012696	UPF2	100	89.844	ENSTNIG00000004453	UPF2	100	89.688	Tetraodon_nigroviridis
ENSACLG00000012696	UPF2	93	75.252	ENSTBEG00000012679	UPF2	93	73.490	Tupaia_belangeri
ENSACLG00000012696	UPF2	100	81.889	ENSTTRG00000016388	UPF2	100	81.265	Tursiops_truncatus
ENSACLG00000012696	UPF2	87	94.382	ENSUAMG00000023560	UPF2	98	94.382	Ursus_americanus
ENSACLG00000012696	UPF2	100	83.229	ENSUMAG00000012953	UPF2	95	81.435	Ursus_maritimus
ENSACLG00000012696	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSACLG00000012696	UPF2	100	83.151	ENSVVUG00000006166	UPF2	100	81.357	Vulpes_vulpes
ENSACLG00000012696	UPF2	100	79.922	ENSXETG00000033103	UPF2	91	84.523	Xenopus_tropicalis
ENSACLG00000012696	UPF2	99	93.652	ENSXCOG00000011604	UPF2	100	93.260	Xiphophorus_couchianus
ENSACLG00000012696	UPF2	100	93.818	ENSXMAG00000017209	UPF2	100	93.427	Xiphophorus_maculatus