EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000013636 (Gene tree)
Gene ID: 113018261
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 22925 bases
Position: chrLS419842.1:69811-92735
Accession: 113018261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000020059	RRM_1	PF00076.22	5.7e-12	1	1
ENSACLP00000020080	RRM_1	PF00076.22	5.7e-12	1	1
ENSACLP00000020099	RRM_1	PF00076.22	5.7e-12	1	1
ENSACLP00000020126	RRM_1	PF00076.22	6.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000020562	-	1836	-	ENSACLP00000020099	299 (aa)	-	-
ENSACLT00000020587	-	2119	-	ENSACLP00000020126	333 (aa)	XP_026017106	UPI000E40D553
ENSACLT00000020542	-	1152	-	ENSACLP00000020080	314 (aa)	-	-
ENSACLT00000020522	-	1186	-	ENSACLP00000020059	314 (aa)	-	-

Gene Model

Click here to download ENSACLG00000013636's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000013636's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000013636	-	87	78.947	ENSACLG00000005707	-	86	82.213
ENSACLG00000013636	-	70	51.185	ENSACLG00000007561	raly	64	52.830
ENSACLG00000013636	-	90	50.704	ENSACLG00000006949	-	73	58.065
ENSACLG00000013636	-	96	96.864	ENSACLG00000000995	-	100	99.673
ENSACLG00000013636	-	88	47.857	ENSACLG00000011720	-	74	54.299

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000013636	-	88	51.481	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSACLG00000013636	-	90	92.933	ENSAPOG00000006963	hnrnpc	100	87.296	Acanthochromis_polyacanthus
ENSACLG00000013636	-	89	94.983	ENSACIG00000000270	-	100	94.983	Amphilophus_citrinellus
ENSACLG00000013636	-	85	80.545	ENSACIG00000016568	-	90	78.543	Amphilophus_citrinellus
ENSACLG00000013636	-	90	92.580	ENSAOCG00000003896	-	100	86.971	Amphiprion_ocellaris
ENSACLG00000013636	-	84	80.237	ENSAOCG00000021616	-	78	82.213	Amphiprion_ocellaris
ENSACLG00000013636	-	85	81.323	ENSAPEG00000019962	-	81	83.004	Amphiprion_percula
ENSACLG00000013636	-	90	92.580	ENSAPEG00000001489	-	100	86.971	Amphiprion_percula
ENSACLG00000013636	-	90	92.254	ENSATEG00000011734	-	100	88.350	Anabas_testudineus
ENSACLG00000013636	-	87	80.075	ENSATEG00000018006	-	76	87.981	Anabas_testudineus
ENSACLG00000013636	-	74	51.261	ENSAPLG00000015574	RALYL	75	54.054	Anas_platyrhynchos
ENSACLG00000013636	-	74	50.420	ENSACAG00000028464	RALYL	74	54.348	Anolis_carolinensis
ENSACLG00000013636	-	88	51.111	ENSANAG00000023383	RALYL	73	54.795	Aotus_nancymaae
ENSACLG00000013636	-	87	79.231	ENSAMXG00000034915	zgc:55733	86	77.108	Astyanax_mexicanus
ENSACLG00000013636	-	70	80.476	ENSAMXG00000042946	hnrnpc	95	73.656	Astyanax_mexicanus
ENSACLG00000013636	-	88	51.111	ENSCJAG00000000402	RALYL	73	54.795	Callithrix_jacchus
ENSACLG00000013636	-	88	48.227	ENSCPOG00000012314	RALYL	74	54.348	Cavia_porcellus
ENSACLG00000013636	-	88	51.852	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSACLG00000013636	-	88	51.481	ENSCATG00000042145	RALYL	73	55.251	Cercocebus_atys
ENSACLG00000013636	-	90	45.819	ENSCLAG00000005228	RALYL	74	54.348	Chinchilla_lanigera
ENSACLG00000013636	-	70	52.212	ENSCHOG00000013228	RALYL	74	51.739	Choloepus_hoffmanni
ENSACLG00000013636	-	88	51.481	ENSCANG00000039144	RALYL	73	55.251	Colobus_angolensis_palliatus
ENSACLG00000013636	-	74	51.681	ENSCGRG00001009241	Ralyl	74	55.217	Cricetulus_griseus_chok1gshd
ENSACLG00000013636	-	72	80.275	ENSCSEG00000019769	-	70	81.250	Cynoglossus_semilaevis
ENSACLG00000013636	-	85	76.562	ENSCSEG00000021349	-	90	69.655	Cynoglossus_semilaevis
ENSACLG00000013636	-	84	82.353	ENSCVAG00000016981	-	87	74.386	Cyprinodon_variegatus
ENSACLG00000013636	-	89	75.000	ENSCVAG00000002797	-	91	74.444	Cyprinodon_variegatus
ENSACLG00000013636	-	80	80.165	ENSDARG00000053810	hnrnpc	78	78.968	Danio_rerio
ENSACLG00000013636	-	87	80.769	ENSDARG00000103845	zgc:55733	90	80.321	Danio_rerio
ENSACLG00000013636	-	88	48.421	ENSDORG00000003721	Ralyl	74	55.217	Dipodomys_ordii
ENSACLG00000013636	-	54	56.322	ENSETEG00000014028	RALYL	82	59.627	Echinops_telfairi
ENSACLG00000013636	-	72	45.815	ENSEBUG00000012363	hnrnpc	64	45.662	Eptatretus_burgeri
ENSACLG00000013636	-	89	43.860	ENSEBUG00000006049	RALYL	73	47.619	Eptatretus_burgeri
ENSACLG00000013636	-	90	46.000	ENSEEUG00000007202	RALYL	76	55.459	Erinaceus_europaeus
ENSACLG00000013636	-	85	82.222	ENSELUG00000007714	-	89	82.197	Esox_lucius
ENSACLG00000013636	-	87	78.067	ENSELUG00000004132	-	87	77.907	Esox_lucius
ENSACLG00000013636	-	70	56.744	ENSFALG00000008647	RALYL	96	55.924	Ficedula_albicollis
ENSACLG00000013636	-	95	86.268	ENSFHEG00000003605	-	95	85.417	Fundulus_heteroclitus
ENSACLG00000013636	-	85	76.471	ENSFHEG00000007278	-	98	66.254	Fundulus_heteroclitus
ENSACLG00000013636	-	74	54.626	ENSGALG00000036938	RALYL	74	54.054	Gallus_gallus
ENSACLG00000013636	-	85	79.377	ENSGAFG00000020992	-	82	79.842	Gambusia_affinis
ENSACLG00000013636	-	95	85.563	ENSGAFG00000020486	-	100	85.016	Gambusia_affinis
ENSACLG00000013636	-	73	73.661	ENSGACG00000018932	-	83	73.430	Gasterosteus_aculeatus
ENSACLG00000013636	-	89	78.598	ENSGACG00000017772	-	96	78.968	Gasterosteus_aculeatus
ENSACLG00000013636	-	88	51.481	ENSGGOG00000000841	RALYL	73	55.251	Gorilla_gorilla
ENSACLG00000013636	-	96	96.516	ENSHBUG00000018342	-	100	99.346	Haplochromis_burtoni
ENSACLG00000013636	-	87	79.323	ENSHBUG00000010527	-	79	81.961	Haplochromis_burtoni
ENSACLG00000013636	-	90	45.485	ENSHGLG00000004866	RALYL	74	53.913	Heterocephalus_glaber_female
ENSACLG00000013636	-	90	45.485	ENSHGLG00100017480	RALYL	74	53.913	Heterocephalus_glaber_male
ENSACLG00000013636	-	86	76.753	ENSHCOG00000012333	hnrnpc	88	73.801	Hippocampus_comes
ENSACLG00000013636	-	88	78.409	ENSIPUG00000008666	zgc:55733	91	84.541	Ictalurus_punctatus
ENSACLG00000013636	-	86	81.008	ENSIPUG00000011271	hnrnpc	95	82.110	Ictalurus_punctatus
ENSACLG00000013636	-	90	45.333	ENSSTOG00000012583	RALYL	76	54.783	Ictidomys_tridecemlineatus
ENSACLG00000013636	-	84	78.346	ENSKMAG00000018265	-	78	79.134	Kryptolebias_marmoratus
ENSACLG00000013636	-	94	88.571	ENSKMAG00000011170	-	91	87.279	Kryptolebias_marmoratus
ENSACLG00000013636	-	90	81.071	ENSLBEG00000024418	-	99	76.159	Labrus_bergylta
ENSACLG00000013636	-	87	78.626	ENSLBEG00000006193	-	79	79.447	Labrus_bergylta
ENSACLG00000013636	-	90	84.444	ENSLBEG00000006979	-	99	79.181	Labrus_bergylta
ENSACLG00000013636	-	87	69.403	ENSLOCG00000002560	hnrnpc	88	70.817	Lepisosteus_oculatus
ENSACLG00000013636	-	88	51.481	ENSMNEG00000033288	RALYL	73	55.251	Macaca_nemestrina
ENSACLG00000013636	-	88	51.481	ENSMLEG00000038284	RALYL	73	55.251	Mandrillus_leucophaeus
ENSACLG00000013636	-	85	82.101	ENSMAMG00000008033	-	85	83.333	Mastacembelus_armatus
ENSACLG00000013636	-	90	90.493	ENSMAMG00000012236	-	92	90.141	Mastacembelus_armatus
ENSACLG00000013636	-	87	78.947	ENSMZEG00005024249	-	80	82.213	Maylandia_zebra
ENSACLG00000013636	-	96	96.864	ENSMZEG00005020460	-	100	99.673	Maylandia_zebra
ENSACLG00000013636	-	74	51.681	ENSMAUG00000015149	Ralyl	74	55.217	Mesocricetus_auratus
ENSACLG00000013636	-	90	48.611	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSACLG00000013636	-	74	51.681	ENSMOCG00000017371	Ralyl	74	55.217	Microtus_ochrogaster
ENSACLG00000013636	-	83	81.928	ENSMMOG00000019520	-	89	79.104	Mola_mola
ENSACLG00000013636	-	85	92.549	ENSMMOG00000021465	-	88	92.400	Mola_mola
ENSACLG00000013636	-	87	82.510	ENSMALG00000014623	-	79	82.143	Monopterus_albus
ENSACLG00000013636	-	88	81.293	ENSMALG00000007520	-	98	79.655	Monopterus_albus
ENSACLG00000013636	-	74	51.261	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSACLG00000013636	-	84	46.823	ENSMPUG00000010724	RALYL	74	54.348	Mustela_putorius_furo
ENSACLG00000013636	-	74	51.681	ENSNGAG00000013375	Ralyl	74	55.217	Nannospalax_galili
ENSACLG00000013636	-	93	94.915	ENSNBRG00000004912	-	99	97.987	Neolamprologus_brichardi
ENSACLG00000013636	-	87	79.323	ENSNBRG00000015676	-	95	68.027	Neolamprologus_brichardi
ENSACLG00000013636	-	88	51.481	ENSNLEG00000002702	RALYL	70	55.251	Nomascus_leucogenys
ENSACLG00000013636	-	59	50.259	ENSOPRG00000013650	-	98	48.000	Ochotona_princeps
ENSACLG00000013636	-	88	48.410	ENSODEG00000001012	RALYL	74	53.913	Octodon_degus
ENSACLG00000013636	-	87	79.323	ENSONIG00000018350	-	79	81.961	Oreochromis_niloticus
ENSACLG00000013636	-	93	95.608	ENSONIG00000007859	-	100	96.141	Oreochromis_niloticus
ENSACLG00000013636	-	84	78.927	ENSORLG00000003144	-	78	80.077	Oryzias_latipes
ENSACLG00000013636	-	92	75.974	ENSORLG00000009999	-	100	75.000	Oryzias_latipes
ENSACLG00000013636	-	92	75.649	ENSORLG00020018228	hnrnpc	100	74.675	Oryzias_latipes_hni
ENSACLG00000013636	-	92	75.974	ENSORLG00015019755	-	100	75.000	Oryzias_latipes_hsok
ENSACLG00000013636	-	84	78.927	ENSORLG00015009460	-	78	80.077	Oryzias_latipes_hsok
ENSACLG00000013636	-	92	75.728	ENSOMEG00000020488	-	100	75.081	Oryzias_melastigma
ENSACLG00000013636	-	84	81.890	ENSOMEG00000022665	-	79	82.677	Oryzias_melastigma
ENSACLG00000013636	-	88	51.481	ENSPPAG00000038705	RALYL	73	55.251	Pan_paniscus
ENSACLG00000013636	-	84	48.611	ENSPPRG00000018612	RALYL	73	58.182	Panthera_pardus
ENSACLG00000013636	-	84	48.611	ENSPTIG00000020331	RALYL	73	58.182	Panthera_tigris_altaica
ENSACLG00000013636	-	88	51.481	ENSPTRG00000020381	RALYL	73	55.251	Pan_troglodytes
ENSACLG00000013636	-	88	51.481	ENSPANG00000029305	RALYL	73	55.251	Papio_anubis
ENSACLG00000013636	-	89	78.746	ENSPKIG00000008592	-	87	80.435	Paramormyrops_kingsleyae
ENSACLG00000013636	-	89	78.596	ENSPKIG00000022837	-	86	81.091	Paramormyrops_kingsleyae
ENSACLG00000013636	-	74	51.261	ENSPSIG00000011135	RALYL	74	54.783	Pelodiscus_sinensis
ENSACLG00000013636	-	73	88.584	ENSPMGG00000013144	-	78	85.024	Periophthalmus_magnuspinnatus
ENSACLG00000013636	-	74	75.225	ENSPMGG00000017774	-	86	67.619	Periophthalmus_magnuspinnatus
ENSACLG00000013636	-	74	51.681	ENSPEMG00000016447	Ralyl	74	55.217	Peromyscus_maniculatus_bairdii
ENSACLG00000013636	-	70	52.863	ENSPMAG00000002407	RALYL	96	51.073	Petromyzon_marinus
ENSACLG00000013636	-	84	79.447	ENSPFOG00000002643	-	80	79.151	Poecilia_formosa
ENSACLG00000013636	-	95	88.070	ENSPFOG00000001583	-	100	86.688	Poecilia_formosa
ENSACLG00000013636	-	84	79.447	ENSPLAG00000000061	-	86	74.733	Poecilia_latipinna
ENSACLG00000013636	-	95	86.972	ENSPLAG00000015305	-	100	85.668	Poecilia_latipinna
ENSACLG00000013636	-	95	87.676	ENSPMEG00000004802	-	100	86.319	Poecilia_mexicana
ENSACLG00000013636	-	84	79.051	ENSPMEG00000016524	-	80	78.764	Poecilia_mexicana
ENSACLG00000013636	-	90	88.380	ENSPREG00000007928	-	93	88.380	Poecilia_reticulata
ENSACLG00000013636	-	84	78.656	ENSPREG00000001852	-	86	78.378	Poecilia_reticulata
ENSACLG00000013636	-	88	42.697	ENSPPYG00000018710	-	67	47.115	Pongo_abelii
ENSACLG00000013636	-	74	51.899	ENSPVAG00000010821	RALYL	78	52.361	Pteropus_vampyrus
ENSACLG00000013636	-	87	79.323	ENSPNYG00000003747	-	85	81.961	Pundamilia_nyererei
ENSACLG00000013636	-	97	98.616	ENSPNYG00000020293	-	99	98.616	Pundamilia_nyererei
ENSACLG00000013636	-	84	78.988	ENSPNAG00000019200	zgc:55733	79	76.763	Pygocentrus_nattereri
ENSACLG00000013636	-	81	83.128	ENSPNAG00000015686	hnrnpc	84	80.876	Pygocentrus_nattereri
ENSACLG00000013636	-	88	51.481	ENSRROG00000023925	RALYL	80	75.949	Rhinopithecus_roxellana
ENSACLG00000013636	-	86	76.046	ENSSFOG00015012015	-	80	85.646	Scleropages_formosus
ENSACLG00000013636	-	84	78.927	ENSSFOG00015012924	-	78	96.104	Scleropages_formosus
ENSACLG00000013636	-	86	78.626	ENSSMAG00000011147	-	77	85.167	Scophthalmus_maximus
ENSACLG00000013636	-	89	86.415	ENSSMAG00000013592	-	99	81.410	Scophthalmus_maximus
ENSACLG00000013636	-	87	81.818	ENSSDUG00000006730	-	80	80.632	Seriola_dumerili
ENSACLG00000013636	-	95	91.166	ENSSDUG00000001723	-	100	88.274	Seriola_dumerili
ENSACLG00000013636	-	93	92.446	ENSSLDG00000007454	-	87	91.321	Seriola_lalandi_dorsalis
ENSACLG00000013636	-	87	81.818	ENSSLDG00000007474	-	87	80.632	Seriola_lalandi_dorsalis
ENSACLG00000013636	-	87	80.303	ENSSPAG00000013996	-	79	81.423	Stegastes_partitus
ENSACLG00000013636	-	94	93.214	ENSSPAG00000023204	-	100	88.599	Stegastes_partitus
ENSACLG00000013636	-	72	52.361	ENSTGUG00000011689	RALYL	76	54.054	Taeniopygia_guttata
ENSACLG00000013636	-	85	85.039	ENSTRUG00000020158	-	82	84.400	Takifugu_rubripes
ENSACLG00000013636	-	84	76.078	ENSTNIG00000000334	-	93	73.643	Tetraodon_nigroviridis
ENSACLG00000013636	-	85	81.923	ENSTNIG00000007427	-	83	79.216	Tetraodon_nigroviridis
ENSACLG00000013636	-	72	48.085	ENSTBEG00000005551	RALYL	86	47.391	Tupaia_belangeri
ENSACLG00000013636	-	84	44.040	ENSTTRG00000015762	RALYL	74	52.778	Tursiops_truncatus
ENSACLG00000013636	-	84	44.948	ENSVPAG00000008501	RALYL	74	53.881	Vicugna_pacos
ENSACLG00000013636	-	88	81.887	ENSXCOG00000006552	-	81	81.275	Xiphophorus_couchianus
ENSACLG00000013636	-	52	87.730	ENSXCOG00000019434	-	69	87.037	Xiphophorus_couchianus
ENSACLG00000013636	-	95	70.764	ENSXMAG00000022849	-	95	69.767	Xiphophorus_maculatus
ENSACLG00000013636	-	95	85.915	ENSXMAG00000009333	-	100	84.691	Xiphophorus_maculatus