EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000015256 (Gene tree)
Gene ID: 113030946
Gene Symbol: larp1
Alias: wu:fb92d03|wu:fd15e07
Full Name: La ribonucleoprotein domain family member 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 52658 bases
Position: chr10:24409689-24462346
Accession: 113030946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000022620	La	PF05383.17	1.8e-20	1	1
ENSACLP00000022566	La	PF05383.17	1.9e-20	1	1
ENSACLP00000022722	La	PF05383.17	1.9e-20	1	1
ENSACLP00000022704	La	PF05383.17	2.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000023237	-	3093	-	ENSACLP00000022704	1030 (aa)	-	-
ENSACLT00000023256	-	2952	-	ENSACLP00000022722	983 (aa)	XP_026038542	UPI00064794B6
ENSACLT00000023152	-	3798	-	ENSACLP00000022620	1090 (aa)	XP_026038541	UPI000647CB14
ENSACLT00000023098	-	3870	-	ENSACLP00000022566	1114 (aa)	XP_026038534	UPI000329DDDB

Gene Model

Click here to download ENSACLG00000015256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000015256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000015256	larp1	95	53.119	ENSACLG00000011948	larp1b	90	53.191

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000015256	larp1	98	67.372	ENSG00000155506	LARP1	90	81.818	Homo_sapiens
ENSACLG00000015256	larp1	87	97.235	ENSAPOG00000020685	larp1	99	97.235	Acanthochromis_polyacanthus
ENSACLG00000015256	larp1	98	67.538	ENSAMEG00000016673	LARP1	99	68.405	Ailuropoda_melanoleuca
ENSACLG00000015256	larp1	100	83.242	ENSACIG00000012994	larp1	93	93.631	Amphilophus_citrinellus
ENSACLG00000015256	larp1	87	93.333	ENSAOCG00000007792	larp1	100	93.333	Amphiprion_ocellaris
ENSACLG00000015256	larp1	99	93.075	ENSAPEG00000022246	larp1	100	90.485	Amphiprion_percula
ENSACLG00000015256	larp1	98	92.141	ENSATEG00000013523	larp1	100	90.349	Anabas_testudineus
ENSACLG00000015256	larp1	92	70.299	ENSAPLG00000007559	LARP1	99	72.113	Anas_platyrhynchos
ENSACLG00000015256	larp1	98	68.969	ENSACAG00000004071	LARP1	97	72.299	Anolis_carolinensis
ENSACLG00000015256	larp1	98	66.867	ENSANAG00000029949	LARP1	99	65.714	Aotus_nancymaae
ENSACLG00000015256	larp1	96	80.359	ENSAMXG00000000859	larp1	98	76.714	Astyanax_mexicanus
ENSACLG00000015256	larp1	95	68.257	ENSBTAG00000008443	LARP1	99	63.209	Bos_taurus
ENSACLG00000015256	larp1	98	67.271	ENSCJAG00000004454	LARP1	99	63.693	Callithrix_jacchus
ENSACLG00000015256	larp1	98	67.638	ENSCAFG00000017639	LARP1	99	68.507	Canis_familiaris
ENSACLG00000015256	larp1	90	70.077	ENSCAFG00020023860	LARP1	99	69.836	Canis_lupus_dingo
ENSACLG00000015256	larp1	95	68.050	ENSCHIG00000014414	LARP1	99	61.820	Capra_hircus
ENSACLG00000015256	larp1	98	67.573	ENSTSYG00000013732	LARP1	98	66.119	Carlito_syrichta
ENSACLG00000015256	larp1	85	68.728	ENSCAPG00000013865	LARP1	86	68.092	Cavia_aperea
ENSACLG00000015256	larp1	96	68.524	ENSCPOG00000003377	LARP1	99	68.238	Cavia_porcellus
ENSACLG00000015256	larp1	98	67.170	ENSCCAG00000025201	LARP1	99	63.402	Cebus_capucinus
ENSACLG00000015256	larp1	98	67.069	ENSCATG00000030675	LARP1	99	61.552	Cercocebus_atys
ENSACLG00000015256	larp1	98	68.145	ENSCLAG00000012755	LARP1	99	67.042	Chinchilla_lanigera
ENSACLG00000015256	larp1	90	66.998	ENSCSAG00000010800	LARP1	98	67.257	Chlorocebus_sabaeus
ENSACLG00000015256	larp1	91	64.589	ENSCHOG00000012716	LARP1	91	64.589	Choloepus_hoffmanni
ENSACLG00000015256	larp1	99	70.889	ENSCPBG00000002173	LARP1	93	72.112	Chrysemys_picta_bellii
ENSACLG00000015256	larp1	98	67.472	ENSCANG00000037418	LARP1	92	68.238	Colobus_angolensis_palliatus
ENSACLG00000015256	larp1	98	67.203	ENSCGRG00001016913	Larp1	99	64.183	Cricetulus_griseus_chok1gshd
ENSACLG00000015256	larp1	95	64.921	ENSCGRG00000009916	Larp1	99	65.885	Cricetulus_griseus_crigri
ENSACLG00000015256	larp1	99	90.946	ENSCSEG00000016431	larp1	100	87.557	Cynoglossus_semilaevis
ENSACLG00000015256	larp1	98	88.302	ENSCVAG00000022687	larp1	100	86.326	Cyprinodon_variegatus
ENSACLG00000015256	larp1	99	71.853	ENSDARG00000101722	larp1	95	72.967	Danio_rerio
ENSACLG00000015256	larp1	98	67.170	ENSDNOG00000012073	LARP1	99	63.725	Dasypus_novemcinctus
ENSACLG00000015256	larp1	98	63.490	ENSDORG00000002897	Larp1	97	65.846	Dipodomys_ordii
ENSACLG00000015256	larp1	92	68.575	ENSETEG00000020251	LARP1	100	69.747	Echinops_telfairi
ENSACLG00000015256	larp1	98	67.236	ENSEASG00005001070	LARP1	99	63.434	Equus_asinus_asinus
ENSACLG00000015256	larp1	98	67.236	ENSECAG00000017002	LARP1	78	64.373	Equus_caballus
ENSACLG00000015256	larp1	93	64.831	ENSEEUG00000001065	LARP1	99	65.550	Erinaceus_europaeus
ENSACLG00000015256	larp1	98	81.161	ENSELUG00000019403	larp1	99	78.336	Esox_lucius
ENSACLG00000015256	larp1	98	67.337	ENSFCAG00000000592	LARP1	99	63.911	Felis_catus
ENSACLG00000015256	larp1	86	73.059	ENSFALG00000008335	LARP1	99	73.647	Ficedula_albicollis
ENSACLG00000015256	larp1	98	67.505	ENSFDAG00000021125	LARP1	99	68.270	Fukomys_damarensis
ENSACLG00000015256	larp1	63	79.143	ENSFHEG00000020307	larp1	97	78.571	Fundulus_heteroclitus
ENSACLG00000015256	larp1	99	70.041	ENSGALG00000040109	LARP1	97	71.575	Gallus_gallus
ENSACLG00000015256	larp1	99	70.151	ENSGAGG00000025113	LARP1	98	72.757	Gopherus_agassizii
ENSACLG00000015256	larp1	98	67.271	ENSGGOG00000006048	LARP1	94	67.339	Gorilla_gorilla
ENSACLG00000015256	larp1	100	99.102	ENSHBUG00000020762	larp1	100	99.102	Haplochromis_burtoni
ENSACLG00000015256	larp1	96	67.385	ENSHGLG00000006267	LARP1	99	62.956	Heterocephalus_glaber_female
ENSACLG00000015256	larp1	96	58.689	ENSHGLG00100003395	-	90	58.409	Heterocephalus_glaber_male
ENSACLG00000015256	larp1	98	67.236	ENSHGLG00100014230	-	99	67.996	Heterocephalus_glaber_male
ENSACLG00000015256	larp1	90	92.718	ENSHCOG00000010786	larp1	99	92.718	Hippocampus_comes
ENSACLG00000015256	larp1	96	74.632	ENSIPUG00000019105	Larp1	94	77.638	Ictalurus_punctatus
ENSACLG00000015256	larp1	98	64.919	ENSSTOG00000005678	LARP1	98	65.846	Ictidomys_tridecemlineatus
ENSACLG00000015256	larp1	98	63.498	ENSJJAG00000016950	Larp1	99	60.579	Jaculus_jaculus
ENSACLG00000015256	larp1	99	89.308	ENSKMAG00000018468	larp1	99	89.409	Kryptolebias_marmoratus
ENSACLG00000015256	larp1	99	88.450	ENSLBEG00000027172	larp1	100	86.250	Labrus_bergylta
ENSACLG00000015256	larp1	92	78.970	ENSLOCG00000012457	larp1	99	75.852	Lepisosteus_oculatus
ENSACLG00000015256	larp1	98	66.129	ENSLAFG00000008991	LARP1	99	62.916	Loxodonta_africana
ENSACLG00000015256	larp1	98	67.069	ENSMFAG00000031651	LARP1	92	67.861	Macaca_fascicularis
ENSACLG00000015256	larp1	98	64.646	ENSMMUG00000009411	LARP1	99	65.673	Macaca_mulatta
ENSACLG00000015256	larp1	91	69.063	ENSMNEG00000039294	LARP1	99	69.222	Macaca_nemestrina
ENSACLG00000015256	larp1	98	67.170	ENSMLEG00000035142	LARP1	92	67.963	Mandrillus_leucophaeus
ENSACLG00000015256	larp1	99	91.870	ENSMAMG00000021788	larp1	100	89.337	Mastacembelus_armatus
ENSACLG00000015256	larp1	100	100.000	ENSMZEG00005009345	larp1	100	100.000	Maylandia_zebra
ENSACLG00000015256	larp1	98	69.512	ENSMGAG00000005696	LARP1	99	71.118	Meleagris_gallopavo
ENSACLG00000015256	larp1	98	67.304	ENSMAUG00000001385	Larp1	99	64.331	Mesocricetus_auratus
ENSACLG00000015256	larp1	98	66.265	ENSMICG00000000837	LARP1	98	69.647	Microcebus_murinus
ENSACLG00000015256	larp1	98	67.304	ENSMOCG00000008920	Larp1	99	64.241	Microtus_ochrogaster
ENSACLG00000015256	larp1	94	69.634	ENSMMOG00000013364	larp1	99	71.810	Mola_mola
ENSACLG00000015256	larp1	98	67.034	ENSMODG00000008663	LARP1	98	68.298	Monodelphis_domestica
ENSACLG00000015256	larp1	99	91.650	ENSMALG00000017180	larp1	100	87.792	Monopterus_albus
ENSACLG00000015256	larp1	98	67.103	MGP_CAROLIEiJ_G0016383	Larp1	99	64.510	Mus_caroli
ENSACLG00000015256	larp1	98	67.203	ENSMUSG00000037331	Larp1	99	64.600	Mus_musculus
ENSACLG00000015256	larp1	98	67.304	MGP_PahariEiJ_G0017518	Larp1	99	64.542	Mus_pahari
ENSACLG00000015256	larp1	98	67.203	MGP_SPRETEiJ_G0017225	Larp1	99	64.600	Mus_spretus
ENSACLG00000015256	larp1	79	65.796	ENSMPUG00000013564	LARP1	99	61.456	Mustela_putorius_furo
ENSACLG00000015256	larp1	98	64.264	ENSMLUG00000002608	LARP1	99	65.275	Myotis_lucifugus
ENSACLG00000015256	larp1	98	65.641	ENSNGAG00000001098	Larp1	98	65.510	Nannospalax_galili
ENSACLG00000015256	larp1	96	91.180	ENSNBRG00000008963	larp1	98	93.686	Neolamprologus_brichardi
ENSACLG00000015256	larp1	98	66.532	ENSNLEG00000016588	LARP1	98	66.215	Nomascus_leucogenys
ENSACLG00000015256	larp1	91	67.579	ENSMEUG00000002957	LARP1	99	65.325	Notamacropus_eugenii
ENSACLG00000015256	larp1	98	67.137	ENSOPRG00000013014	LARP1	99	68.308	Ochotona_princeps
ENSACLG00000015256	larp1	98	67.339	ENSODEG00000010824	LARP1	99	68.340	Octodon_degus
ENSACLG00000015256	larp1	99	93.147	ENSONIG00000017308	larp1	100	93.088	Oreochromis_niloticus
ENSACLG00000015256	larp1	99	68.876	ENSOANG00000005096	LARP1	99	68.818	Ornithorhynchus_anatinus
ENSACLG00000015256	larp1	92	74.731	ENSOCUG00000013066	LARP1	92	75.067	Oryctolagus_cuniculus
ENSACLG00000015256	larp1	100	87.080	ENSORLG00000000824	larp1	100	84.312	Oryzias_latipes
ENSACLG00000015256	larp1	100	87.182	ENSORLG00020022241	larp1	100	84.312	Oryzias_latipes_hni
ENSACLG00000015256	larp1	100	85.554	ENSORLG00015007538	larp1	100	84.312	Oryzias_latipes_hsok
ENSACLG00000015256	larp1	99	85.743	ENSOMEG00000003134	larp1	100	83.303	Oryzias_melastigma
ENSACLG00000015256	larp1	98	67.372	ENSOGAG00000016750	LARP1	99	68.135	Otolemur_garnettii
ENSACLG00000015256	larp1	95	66.874	ENSOARG00000009893	LARP1	99	66.157	Ovis_aries
ENSACLG00000015256	larp1	98	67.271	ENSPPAG00000042993	LARP1	92	68.135	Pan_paniscus
ENSACLG00000015256	larp1	98	66.199	ENSPPRG00000009780	LARP1	93	66.530	Panthera_pardus
ENSACLG00000015256	larp1	98	66.298	ENSPTIG00000007013	LARP1	93	67.042	Panthera_tigris_altaica
ENSACLG00000015256	larp1	92	74.328	ENSPTRG00000017447	LARP1	92	74.663	Pan_troglodytes
ENSACLG00000015256	larp1	98	67.069	ENSPANG00000008080	LARP1	99	61.552	Papio_anubis
ENSACLG00000015256	larp1	96	70.359	ENSPKIG00000017153	-	99	68.544	Paramormyrops_kingsleyae
ENSACLG00000015256	larp1	95	81.497	ENSPKIG00000010096	larp1	99	77.156	Paramormyrops_kingsleyae
ENSACLG00000015256	larp1	94	82.143	ENSPMGG00000011599	larp1	98	79.360	Periophthalmus_magnuspinnatus
ENSACLG00000015256	larp1	98	65.333	ENSPEMG00000022523	Larp1	98	65.542	Peromyscus_maniculatus_bairdii
ENSACLG00000015256	larp1	95	69.729	ENSPCIG00000019242	LARP1	89	65.838	Phascolarctos_cinereus
ENSACLG00000015256	larp1	99	85.976	ENSPFOG00000005836	larp1	100	83.318	Poecilia_formosa
ENSACLG00000015256	larp1	99	85.671	ENSPLAG00000008936	larp1	100	83.865	Poecilia_latipinna
ENSACLG00000015256	larp1	99	85.874	ENSPMEG00000013656	larp1	100	83.229	Poecilia_mexicana
ENSACLG00000015256	larp1	99	85.569	ENSPREG00000005726	larp1	99	85.772	Poecilia_reticulata
ENSACLG00000015256	larp1	97	64.640	ENSPCAG00000006407	LARP1	98	65.567	Procavia_capensis
ENSACLG00000015256	larp1	98	60.322	ENSPCOG00000016949	LARP1	99	63.730	Propithecus_coquereli
ENSACLG00000015256	larp1	96	68.313	ENSPVAG00000002262	LARP1	99	63.588	Pteropus_vampyrus
ENSACLG00000015256	larp1	100	99.797	ENSPNYG00000007938	larp1	100	99.797	Pundamilia_nyererei
ENSACLG00000015256	larp1	98	77.583	ENSPNAG00000021427	larp1	99	75.929	Pygocentrus_nattereri
ENSACLG00000015256	larp1	98	64.753	ENSRNOG00000031544	Larp1	98	65.676	Rattus_norvegicus
ENSACLG00000015256	larp1	98	67.170	ENSRBIG00000038005	LARP1	92	67.963	Rhinopithecus_bieti
ENSACLG00000015256	larp1	98	67.170	ENSRROG00000034073	LARP1	99	69.256	Rhinopithecus_roxellana
ENSACLG00000015256	larp1	98	67.205	ENSSBOG00000019816	LARP1	99	65.744	Saimiri_boliviensis_boliviensis
ENSACLG00000015256	larp1	98	68.416	ENSSHAG00000011115	LARP1	99	69.579	Sarcophilus_harrisii
ENSACLG00000015256	larp1	95	78.439	ENSSFOG00015020304	larp1	93	78.747	Scleropages_formosus
ENSACLG00000015256	larp1	98	76.004	ENSSFOG00015018058	-	99	73.259	Scleropages_formosus
ENSACLG00000015256	larp1	93	85.728	ENSSMAG00000007468	larp1	98	85.728	Scophthalmus_maximus
ENSACLG00000015256	larp1	99	93.699	ENSSDUG00000000268	larp1	100	91.487	Seriola_dumerili
ENSACLG00000015256	larp1	91	86.222	ENSSLDG00000016505	larp1	99	90.292	Seriola_lalandi_dorsalis
ENSACLG00000015256	larp1	63	78.169	ENSSARG00000013907	-	88	78.521	Sorex_araneus
ENSACLG00000015256	larp1	99	70.113	ENSSPUG00000012179	-	99	66.815	Sphenodon_punctatus
ENSACLG00000015256	larp1	99	93.414	ENSSPAG00000003910	larp1	100	91.079	Stegastes_partitus
ENSACLG00000015256	larp1	96	67.765	ENSSSCG00000017069	LARP1	99	69.180	Sus_scrofa
ENSACLG00000015256	larp1	95	70.251	ENSTGUG00000000704	LARP1	100	71.672	Taeniopygia_guttata
ENSACLG00000015256	larp1	99	87.792	ENSTRUG00000009470	larp1	99	85.662	Takifugu_rubripes
ENSACLG00000015256	larp1	92	66.989	ENSTBEG00000003381	LARP1	99	67.798	Tupaia_belangeri
ENSACLG00000015256	larp1	97	66.734	ENSTTRG00000015934	LARP1	99	67.821	Tursiops_truncatus
ENSACLG00000015256	larp1	98	67.437	ENSUAMG00000019334	LARP1	99	63.644	Ursus_americanus
ENSACLG00000015256	larp1	95	66.391	ENSUMAG00000002934	LARP1	96	69.085	Ursus_maritimus
ENSACLG00000015256	larp1	90	70.077	ENSVVUG00000004644	LARP1	99	69.836	Vulpes_vulpes
ENSACLG00000015256	larp1	98	70.885	ENSXETG00000008413	larp1	93	71.125	Xenopus_tropicalis
ENSACLG00000015256	larp1	88	85.155	ENSXCOG00000004022	larp1	98	85.135	Xiphophorus_couchianus
ENSACLG00000015256	larp1	99	85.569	ENSXMAG00000018780	larp1	100	82.946	Xiphophorus_maculatus