EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000016902 (Gene tree)
Gene ID: 113024183
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 34670 bases
Position: chr6:20503229-20537898
Accession: 113024183
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000024855	RRM_1	PF00076.22	1.7e-40	1	3
ENSACLP00000024855	RRM_1	PF00076.22	1.7e-40	2	3
ENSACLP00000024855	RRM_1	PF00076.22	1.7e-40	3	3
ENSACLP00000024914	RRM_1	PF00076.22	1.8e-40	1	3
ENSACLP00000024914	RRM_1	PF00076.22	1.8e-40	2	3
ENSACLP00000024914	RRM_1	PF00076.22	1.8e-40	3	3
ENSACLP00000024839	RRM_1	PF00076.22	2.7e-40	1	3
ENSACLP00000024839	RRM_1	PF00076.22	2.7e-40	2	3
ENSACLP00000024839	RRM_1	PF00076.22	2.7e-40	3	3
ENSACLP00000024827	RRM_1	PF00076.22	3e-40	1	3
ENSACLP00000024827	RRM_1	PF00076.22	3e-40	2	3
ENSACLP00000024827	RRM_1	PF00076.22	3e-40	3	3
ENSACLP00000024878	RRM_1	PF00076.22	3e-40	1	3
ENSACLP00000024878	RRM_1	PF00076.22	3e-40	2	3
ENSACLP00000024878	RRM_1	PF00076.22	3e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000025424	-	2371	-	ENSACLP00000024827	616 (aa)	XP_026026812	UPI000329951A
ENSACLT00000025512	-	1826	-	ENSACLP00000024914	546 (aa)	XP_026026826	UPI000329999D
ENSACLT00000025476	-	2231	-	ENSACLP00000024878	616 (aa)	XP_026026812	UPI000329951A
ENSACLT00000025438	-	2347	-	ENSACLP00000024839	608 (aa)	XP_026026824	UPI000329BEBE
ENSACLT00000025453	-	2137	-	ENSACLP00000024855	538 (aa)	XP_026026827	UPI000329E234

Gene Model

Click here to download ENSACLG00000016902's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000016902's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000016902	rbm47	56	71.287	ENSACLG00000017428	a1cf	89	52.852
ENSACLG00000016902	rbm47	53	67.361	ENSACLG00000016153	rbm46	52	68.621
ENSACLG00000016902	rbm47	55	53.642	ENSACLG00000017401	syncripl	77	44.787
ENSACLG00000016902	rbm47	56	54.575	ENSACLG00000009513	hnrnpr	68	45.561
ENSACLG00000016902	rbm47	55	53.311	ENSACLG00000012281	syncrip	66	45.913

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000016902	rbm47	95	85.311	ENSG00000163694	RBM47	100	82.687	Homo_sapiens
ENSACLG00000016902	rbm47	100	94.344	ENSAPOG00000011062	rbm47	100	94.344	Acanthochromis_polyacanthus
ENSACLG00000016902	rbm47	94	84.789	ENSAMEG00000009672	RBM47	100	75.530	Ailuropoda_melanoleuca
ENSACLG00000016902	rbm47	100	94.079	ENSACIG00000011531	rbm47	100	94.079	Amphilophus_citrinellus
ENSACLG00000016902	rbm47	100	94.087	ENSAOCG00000022245	rbm47	100	94.087	Amphiprion_ocellaris
ENSACLG00000016902	rbm47	100	94.087	ENSAPEG00000018304	rbm47	100	94.087	Amphiprion_percula
ENSACLG00000016902	rbm47	100	95.090	ENSATEG00000018400	rbm47	100	95.090	Anabas_testudineus
ENSACLG00000016902	rbm47	100	82.663	ENSAPLG00000013974	RBM47	100	75.654	Anas_platyrhynchos
ENSACLG00000016902	rbm47	100	80.103	ENSACAG00000011833	RBM47	100	75.450	Anolis_carolinensis
ENSACLG00000016902	rbm47	100	81.395	ENSANAG00000029440	RBM47	100	82.429	Aotus_nancymaae
ENSACLG00000016902	rbm47	100	87.113	ENSAMXG00000021794	rbm47	100	87.371	Astyanax_mexicanus
ENSACLG00000016902	rbm47	100	81.186	ENSBTAG00000002356	RBM47	100	76.432	Bos_taurus
ENSACLG00000016902	rbm47	95	85.915	ENSCJAG00000019385	RBM47	100	82.429	Callithrix_jacchus
ENSACLG00000016902	rbm47	94	84.986	ENSCAFG00000015898	RBM47	100	75.574	Canis_familiaris
ENSACLG00000016902	rbm47	78	84.986	ENSCAFG00020010558	RBM47	94	81.137	Canis_lupus_dingo
ENSACLG00000016902	rbm47	100	81.186	ENSCHIG00000026214	RBM47	100	76.432	Capra_hircus
ENSACLG00000016902	rbm47	85	88.053	ENSTSYG00000033612	RBM47	93	88.053	Carlito_syrichta
ENSACLG00000016902	rbm47	100	73.834	ENSCAPG00000008426	RBM47	100	73.834	Cavia_aperea
ENSACLG00000016902	rbm47	100	81.654	ENSCPOG00000014100	RBM47	100	82.687	Cavia_porcellus
ENSACLG00000016902	rbm47	99	55.882	ENSCCAG00000024397	-	99	54.902	Cebus_capucinus
ENSACLG00000016902	rbm47	100	82.732	ENSCCAG00000030129	-	100	82.732	Cebus_capucinus
ENSACLG00000016902	rbm47	95	85.311	ENSCATG00000042064	RBM47	100	82.687	Cercocebus_atys
ENSACLG00000016902	rbm47	95	86.197	ENSCLAG00000001684	RBM47	100	82.687	Chinchilla_lanigera
ENSACLG00000016902	rbm47	94	85.311	ENSCSAG00000017060	RBM47	100	76.432	Chlorocebus_sabaeus
ENSACLG00000016902	rbm47	72	88.235	ENSCHOG00000011731	RBM47	88	76.149	Choloepus_hoffmanni
ENSACLG00000016902	rbm47	100	84.536	ENSCPBG00000013831	RBM47	100	77.977	Chrysemys_picta_bellii
ENSACLG00000016902	rbm47	95	86.197	ENSCANG00000019997	RBM47	100	82.732	Colobus_angolensis_palliatus
ENSACLG00000016902	rbm47	100	71.402	ENSCGRG00001020102	-	100	77.635	Cricetulus_griseus_chok1gshd
ENSACLG00000016902	rbm47	100	81.186	ENSCGRG00001000623	-	100	82.216	Cricetulus_griseus_chok1gshd
ENSACLG00000016902	rbm47	100	79.494	ENSCGRG00000007762	-	100	77.059	Cricetulus_griseus_crigri
ENSACLG00000016902	rbm47	100	75.835	ENSCGRG00000014760	-	100	77.378	Cricetulus_griseus_crigri
ENSACLG00000016902	rbm47	93	93.785	ENSCSEG00000004545	rbm47	100	88.033	Cynoglossus_semilaevis
ENSACLG00000016902	rbm47	100	92.545	ENSCVAG00000020144	rbm47	100	92.545	Cyprinodon_variegatus
ENSACLG00000016902	rbm47	99	87.212	ENSDARG00000061985	rbm47	100	86.616	Danio_rerio
ENSACLG00000016902	rbm47	94	86.798	ENSDNOG00000046854	RBM47	100	75.941	Dasypus_novemcinctus
ENSACLG00000016902	rbm47	100	81.330	ENSDORG00000010144	Rbm47	100	76.384	Dipodomys_ordii
ENSACLG00000016902	rbm47	100	79.487	ENSETEG00000009194	RBM47	100	76.509	Echinops_telfairi
ENSACLG00000016902	rbm47	95	57.072	ENSEBUG00000011912	rbm47	98	58.446	Eptatretus_burgeri
ENSACLG00000016902	rbm47	94	85.955	ENSEASG00005008443	RBM47	100	76.432	Equus_asinus_asinus
ENSACLG00000016902	rbm47	94	85.955	ENSECAG00000004400	RBM47	100	76.432	Equus_caballus
ENSACLG00000016902	rbm47	71	88.095	ENSEEUG00000001194	RBM47	75	81.405	Erinaceus_europaeus
ENSACLG00000016902	rbm47	100	88.579	ENSELUG00000006148	rbm47	100	88.579	Esox_lucius
ENSACLG00000016902	rbm47	94	84.789	ENSFCAG00000012399	RBM47	100	76.393	Felis_catus
ENSACLG00000016902	rbm47	100	83.763	ENSFALG00000002861	RBM47	100	78.352	Ficedula_albicollis
ENSACLG00000016902	rbm47	100	80.620	ENSFDAG00000016326	RBM47	100	80.620	Fukomys_damarensis
ENSACLG00000016902	rbm47	100	92.228	ENSFHEG00000007938	rbm47	100	89.303	Fundulus_heteroclitus
ENSACLG00000016902	rbm47	100	87.310	ENSGMOG00000014802	rbm47	100	87.310	Gadus_morhua
ENSACLG00000016902	rbm47	72	83.805	ENSGALG00000014267	RBM47	100	83.846	Gallus_gallus
ENSACLG00000016902	rbm47	72	89.351	ENSGAFG00000020571	rbm47	98	89.378	Gambusia_affinis
ENSACLG00000016902	rbm47	99	90.746	ENSGACG00000016223	rbm47	100	90.746	Gasterosteus_aculeatus
ENSACLG00000016902	rbm47	100	84.536	ENSGAGG00000020051	RBM47	100	77.977	Gopherus_agassizii
ENSACLG00000016902	rbm47	95	85.311	ENSGGOG00000001367	RBM47	100	82.687	Gorilla_gorilla
ENSACLG00000016902	rbm47	100	100.000	ENSHBUG00000003520	rbm47	100	100.000	Haplochromis_burtoni
ENSACLG00000016902	rbm47	100	61.481	ENSHGLG00000016914	RBM47	100	78.235	Heterocephalus_glaber_female
ENSACLG00000016902	rbm47	100	68.852	ENSHGLG00100003071	-	100	68.689	Heterocephalus_glaber_male
ENSACLG00000016902	rbm47	100	81.912	ENSHGLG00100014028	-	100	81.912	Heterocephalus_glaber_male
ENSACLG00000016902	rbm47	99	93.573	ENSHCOG00000002074	rbm47	99	93.573	Hippocampus_comes
ENSACLG00000016902	rbm47	100	88.402	ENSIPUG00000004743	rbm47	100	88.402	Ictalurus_punctatus
ENSACLG00000016902	rbm47	94	85.070	ENSSTOG00000004727	RBM47	100	82.687	Ictidomys_tridecemlineatus
ENSACLG00000016902	rbm47	94	86.761	ENSJJAG00000013823	Rbm47	100	76.105	Jaculus_jaculus
ENSACLG00000016902	rbm47	100	91.282	ENSKMAG00000000084	rbm47	100	92.051	Kryptolebias_marmoratus
ENSACLG00000016902	rbm47	100	92.545	ENSLBEG00000008436	rbm47	100	92.443	Labrus_bergylta
ENSACLG00000016902	rbm47	93	89.076	ENSLACG00000007196	RBM47	100	77.578	Latimeria_chalumnae
ENSACLG00000016902	rbm47	95	84.111	ENSLOCG00000012966	rbm47	95	80.033	Lepisosteus_oculatus
ENSACLG00000016902	rbm47	100	80.103	ENSLAFG00000011998	RBM47	100	76.393	Loxodonta_africana
ENSACLG00000016902	rbm47	95	85.311	ENSMFAG00000037967	RBM47	100	82.687	Macaca_fascicularis
ENSACLG00000016902	rbm47	94	85.311	ENSMMUG00000012036	RBM47	100	80.000	Macaca_mulatta
ENSACLG00000016902	rbm47	95	85.028	ENSMNEG00000040774	RBM47	100	82.990	Macaca_nemestrina
ENSACLG00000016902	rbm47	95	88.095	ENSMLEG00000041432	RBM47	100	83.792	Mandrillus_leucophaeus
ENSACLG00000016902	rbm47	100	95.596	ENSMAMG00000019143	rbm47	100	95.596	Mastacembelus_armatus
ENSACLG00000016902	rbm47	100	100.000	ENSMZEG00005023659	rbm47	100	100.000	Maylandia_zebra
ENSACLG00000016902	rbm47	100	83.763	ENSMGAG00000012226	RBM47	100	77.651	Meleagris_gallopavo
ENSACLG00000016902	rbm47	100	80.720	ENSMAUG00000006493	Rbm47	100	81.748	Mesocricetus_auratus
ENSACLG00000016902	rbm47	94	82.621	ENSMICG00000026417	RBM47	100	80.103	Microcebus_murinus
ENSACLG00000016902	rbm47	100	80.928	ENSMOCG00000021170	Rbm47	100	81.959	Microtus_ochrogaster
ENSACLG00000016902	rbm47	100	92.282	ENSMMOG00000007260	rbm47	100	94.560	Mola_mola
ENSACLG00000016902	rbm47	58	78.481	ENSMODG00000015426	-	98	78.481	Monodelphis_domestica
ENSACLG00000016902	rbm47	100	83.333	ENSMODG00000007003	RBM47	100	76.721	Monodelphis_domestica
ENSACLG00000016902	rbm47	100	78.811	ENSMODG00000020561	-	100	71.311	Monodelphis_domestica
ENSACLG00000016902	rbm47	100	93.540	ENSMALG00000005167	rbm47	100	93.540	Monopterus_albus
ENSACLG00000016902	rbm47	100	79.897	MGP_CAROLIEiJ_G0027258	Rbm47	100	80.928	Mus_caroli
ENSACLG00000016902	rbm47	100	79.897	ENSMUSG00000070780	Rbm47	100	80.928	Mus_musculus
ENSACLG00000016902	rbm47	100	80.155	MGP_PahariEiJ_G0017040	Rbm47	100	81.186	Mus_pahari
ENSACLG00000016902	rbm47	100	79.897	MGP_SPRETEiJ_G0028253	Rbm47	100	80.928	Mus_spretus
ENSACLG00000016902	rbm47	94	85.634	ENSMPUG00000006177	RBM47	94	76.066	Mustela_putorius_furo
ENSACLG00000016902	rbm47	100	82.005	ENSMLUG00000000889	RBM47	100	75.654	Myotis_lucifugus
ENSACLG00000016902	rbm47	100	82.216	ENSNGAG00000003325	Rbm47	100	75.817	Nannospalax_galili
ENSACLG00000016902	rbm47	100	99.343	ENSNBRG00000015092	rbm47	100	99.343	Neolamprologus_brichardi
ENSACLG00000016902	rbm47	95	85.311	ENSNLEG00000017151	RBM47	100	82.687	Nomascus_leucogenys
ENSACLG00000016902	rbm47	66	87.324	ENSMEUG00000009516	-	99	80.425	Notamacropus_eugenii
ENSACLG00000016902	rbm47	86	86.777	ENSOPRG00000016507	-	75	86.777	Ochotona_princeps
ENSACLG00000016902	rbm47	94	84.789	ENSODEG00000004873	RBM47	100	76.885	Octodon_degus
ENSACLG00000016902	rbm47	100	97.218	ENSONIG00000009061	rbm47	100	97.218	Oreochromis_niloticus
ENSACLG00000016902	rbm47	99	83.290	ENSOANG00000008978	RBM47	100	76.066	Ornithorhynchus_anatinus
ENSACLG00000016902	rbm47	100	80.620	ENSOCUG00000012034	RBM47	100	76.230	Oryctolagus_cuniculus
ENSACLG00000016902	rbm47	100	93.798	ENSORLG00000005847	rbm47	100	93.798	Oryzias_latipes
ENSACLG00000016902	rbm47	100	93.798	ENSORLG00020005154	rbm47	100	93.798	Oryzias_latipes_hni
ENSACLG00000016902	rbm47	100	94.057	ENSORLG00015000066	rbm47	100	94.057	Oryzias_latipes_hsok
ENSACLG00000016902	rbm47	100	93.782	ENSOMEG00000010730	rbm47	100	91.461	Oryzias_melastigma
ENSACLG00000016902	rbm47	94	85.634	ENSOGAG00000029367	-	100	76.393	Otolemur_garnettii
ENSACLG00000016902	rbm47	94	79.155	ENSOGAG00000025193	-	100	69.836	Otolemur_garnettii
ENSACLG00000016902	rbm47	100	70.103	ENSOARG00000012711	RBM47	100	68.740	Ovis_aries
ENSACLG00000016902	rbm47	94	85.311	ENSPPAG00000029763	RBM47	96	82.262	Pan_paniscus
ENSACLG00000016902	rbm47	95	85.634	ENSPPRG00000012873	RBM47	100	82.171	Panthera_pardus
ENSACLG00000016902	rbm47	84	75.442	ENSPTIG00000017046	RBM47	100	74.853	Panthera_tigris_altaica
ENSACLG00000016902	rbm47	95	85.311	ENSPTRG00000016006	RBM47	100	82.687	Pan_troglodytes
ENSACLG00000016902	rbm47	95	85.311	ENSPANG00000005980	RBM47	100	82.687	Papio_anubis
ENSACLG00000016902	rbm47	96	88.579	ENSPKIG00000005037	rbm47	100	85.492	Paramormyrops_kingsleyae
ENSACLG00000016902	rbm47	100	86.788	ENSPKIG00000013431	RBM47	98	86.788	Paramormyrops_kingsleyae
ENSACLG00000016902	rbm47	88	84.278	ENSPSIG00000017516	RBM47	97	79.779	Pelodiscus_sinensis
ENSACLG00000016902	rbm47	94	91.274	ENSPMGG00000018540	rbm47	100	87.993	Periophthalmus_magnuspinnatus
ENSACLG00000016902	rbm47	100	80.928	ENSPEMG00000011088	Rbm47	100	81.959	Peromyscus_maniculatus_bairdii
ENSACLG00000016902	rbm47	99	90.793	ENSPFOG00000007997	rbm47	100	88.889	Poecilia_formosa
ENSACLG00000016902	rbm47	99	90.537	ENSPLAG00000002072	rbm47	100	89.091	Poecilia_latipinna
ENSACLG00000016902	rbm47	100	90.488	ENSPMEG00000017492	rbm47	100	90.488	Poecilia_mexicana
ENSACLG00000016902	rbm47	100	90.680	ENSPREG00000008456	rbm47	100	90.488	Poecilia_reticulata
ENSACLG00000016902	rbm47	94	75.070	ENSPPYG00000014688	RBM47	98	69.178	Pongo_abelii
ENSACLG00000016902	rbm47	88	78.680	ENSPCAG00000011879	RBM47	81	81.796	Procavia_capensis
ENSACLG00000016902	rbm47	94	84.986	ENSPCOG00000023451	RBM47	100	81.395	Propithecus_coquereli
ENSACLG00000016902	rbm47	94	84.874	ENSPVAG00000003812	RBM47	100	76.307	Pteropus_vampyrus
ENSACLG00000016902	rbm47	100	99.509	ENSPNYG00000022868	rbm47	100	99.509	Pundamilia_nyererei
ENSACLG00000016902	rbm47	100	88.175	ENSPNAG00000007940	rbm47	100	88.175	Pygocentrus_nattereri
ENSACLG00000016902	rbm47	100	80.256	ENSRNOG00000002408	Rbm47	100	75.941	Rattus_norvegicus
ENSACLG00000016902	rbm47	95	86.236	ENSRBIG00000039601	RBM47	100	82.732	Rhinopithecus_bieti
ENSACLG00000016902	rbm47	95	86.236	ENSRROG00000044696	RBM47	100	82.732	Rhinopithecus_roxellana
ENSACLG00000016902	rbm47	100	72.623	ENSSBOG00000028475	RBM47	97	82.519	Saimiri_boliviensis_boliviensis
ENSACLG00000016902	rbm47	100	82.946	ENSSHAG00000017576	RBM47	100	82.946	Sarcophilus_harrisii
ENSACLG00000016902	rbm47	98	78.369	ENSSFOG00015024101	RBM47	99	82.258	Scleropages_formosus
ENSACLG00000016902	rbm47	100	85.530	ENSSFOG00015012445	rbm47	100	85.788	Scleropages_formosus
ENSACLG00000016902	rbm47	100	93.023	ENSSMAG00000009744	rbm47	100	93.165	Scophthalmus_maximus
ENSACLG00000016902	rbm47	100	94.148	ENSSDUG00000022684	rbm47	100	93.429	Seriola_dumerili
ENSACLG00000016902	rbm47	100	93.639	ENSSLDG00000003109	rbm47	100	93.639	Seriola_lalandi_dorsalis
ENSACLG00000016902	rbm47	85	78.091	ENSSARG00000001735	RBM47	75	80.260	Sorex_araneus
ENSACLG00000016902	rbm47	100	82.990	ENSSPUG00000007515	RBM47	100	82.990	Sphenodon_punctatus
ENSACLG00000016902	rbm47	100	94.602	ENSSPAG00000001257	rbm47	100	94.602	Stegastes_partitus
ENSACLG00000016902	rbm47	95	85.196	ENSSSCG00000008796	RBM47	100	76.105	Sus_scrofa
ENSACLG00000016902	rbm47	100	83.887	ENSTGUG00000008705	RBM47	100	78.827	Taeniopygia_guttata
ENSACLG00000016902	rbm47	100	87.664	ENSTRUG00000014050	rbm47	100	87.664	Takifugu_rubripes
ENSACLG00000016902	rbm47	100	90.640	ENSTNIG00000006127	rbm47	100	90.640	Tetraodon_nigroviridis
ENSACLG00000016902	rbm47	81	83.616	ENSTBEG00000001607	RBM47	76	80.362	Tupaia_belangeri
ENSACLG00000016902	rbm47	94	85.955	ENSTTRG00000002839	RBM47	100	76.105	Tursiops_truncatus
ENSACLG00000016902	rbm47	94	84.789	ENSUAMG00000021346	RBM47	100	76.230	Ursus_americanus
ENSACLG00000016902	rbm47	53	83.333	ENSVPAG00000000641	-	56	75.796	Vicugna_pacos
ENSACLG00000016902	rbm47	94	85.836	ENSVVUG00000014774	RBM47	100	75.738	Vulpes_vulpes
ENSACLG00000016902	rbm47	100	83.077	ENSXETG00000012802	rbm47	100	76.509	Xenopus_tropicalis
ENSACLG00000016902	rbm47	100	87.732	ENSXCOG00000000780	rbm47	100	89.351	Xiphophorus_couchianus
ENSACLG00000016902	rbm47	100	90.932	ENSXMAG00000009874	rbm47	100	90.932	Xiphophorus_maculatus