EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000017428 (Gene tree)
Gene ID: 113027926
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 16110 bases
Position: chr8:740748-756857
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000025638	DND1_DSRM	PF14709.7	2.1e-26	1	1
ENSACLP00000025638	RRM_1	PF00076.22	2.1e-41	1	3
ENSACLP00000025638	RRM_1	PF00076.22	2.1e-41	2	3
ENSACLP00000025638	RRM_1	PF00076.22	2.1e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000026249	-	1758	-	ENSACLP00000025638	585 (aa)	-	-

Gene Model

Click here to download ENSACLG00000017428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000017428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000017428	a1cf	50	54.266	ENSACLG00000017401	syncripl	54	53.584
ENSACLG00000017428	a1cf	89	52.852	ENSACLG00000016902	rbm47	56	71.287
ENSACLG00000017428	a1cf	91	64.236	ENSACLG00000016153	rbm46	70	64.236

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000017428	a1cf	100	76.119	ENSG00000148584	A1CF	100	89.109	Homo_sapiens
ENSACLG00000017428	a1cf	100	84.370	ENSAPOG00000008259	a1cf	100	83.529	Acanthochromis_polyacanthus
ENSACLG00000017428	a1cf	100	74.877	ENSAMEG00000000523	A1CF	100	73.235	Ailuropoda_melanoleuca
ENSACLG00000017428	a1cf	100	92.219	ENSACIG00000008632	a1cf	100	92.053	Amphilophus_citrinellus
ENSACLG00000017428	a1cf	100	86.723	ENSAOCG00000023744	a1cf	97	90.313	Amphiprion_ocellaris
ENSACLG00000017428	a1cf	100	85.572	ENSAPEG00000009537	a1cf	100	85.572	Amphiprion_percula
ENSACLG00000017428	a1cf	100	88.557	ENSATEG00000013720	a1cf	100	88.060	Anabas_testudineus
ENSACLG00000017428	a1cf	100	76.073	ENSAPLG00000002964	A1CF	100	74.257	Anas_platyrhynchos
ENSACLG00000017428	a1cf	100	77.090	ENSACAG00000015269	A1CF	100	75.879	Anolis_carolinensis
ENSACLG00000017428	a1cf	100	76.451	ENSANAG00000019974	A1CF	100	74.461	Aotus_nancymaae
ENSACLG00000017428	a1cf	100	73.906	ENSAMXG00000018180	a1cf	100	72.123	Astyanax_mexicanus
ENSACLG00000017428	a1cf	100	75.662	ENSBTAG00000021195	A1CF	97	77.840	Bos_taurus
ENSACLG00000017428	a1cf	100	75.286	ENSCJAG00000005045	A1CF	100	73.322	Callithrix_jacchus
ENSACLG00000017428	a1cf	100	75.822	ENSCAFG00000015581	A1CF	100	73.520	Canis_familiaris
ENSACLG00000017428	a1cf	100	75.822	ENSCAFG00020026421	A1CF	98	82.333	Canis_lupus_dingo
ENSACLG00000017428	a1cf	100	75.000	ENSCHIG00000020411	A1CF	100	73.529	Capra_hircus
ENSACLG00000017428	a1cf	94	75.661	ENSTSYG00000001755	A1CF	100	74.250	Carlito_syrichta
ENSACLG00000017428	a1cf	100	73.178	ENSCAPG00000017386	A1CF	95	75.399	Cavia_aperea
ENSACLG00000017428	a1cf	100	73.813	ENSCPOG00000009807	A1CF	100	72.340	Cavia_porcellus
ENSACLG00000017428	a1cf	100	75.410	ENSCCAG00000018168	A1CF	100	73.115	Cebus_capucinus
ENSACLG00000017428	a1cf	100	76.206	ENSCATG00000043715	A1CF	100	74.709	Cercocebus_atys
ENSACLG00000017428	a1cf	100	74.020	ENSCLAG00000010424	A1CF	100	72.549	Chinchilla_lanigera
ENSACLG00000017428	a1cf	100	74.877	ENSCSAG00000007032	A1CF	100	73.399	Chlorocebus_sabaeus
ENSACLG00000017428	a1cf	97	72.575	ENSCHOG00000009089	A1CF	98	70.903	Choloepus_hoffmanni
ENSACLG00000017428	a1cf	100	75.743	ENSCPBG00000026464	A1CF	100	73.762	Chrysemys_picta_bellii
ENSACLG00000017428	a1cf	100	75.369	ENSCANG00000038032	A1CF	100	73.892	Colobus_angolensis_palliatus
ENSACLG00000017428	a1cf	100	73.856	ENSCGRG00001017413	A1cf	100	72.222	Cricetulus_griseus_chok1gshd
ENSACLG00000017428	a1cf	100	73.856	ENSCGRG00000017332	A1cf	100	72.222	Cricetulus_griseus_crigri
ENSACLG00000017428	a1cf	100	82.630	ENSCSEG00000002361	a1cf	100	82.955	Cynoglossus_semilaevis
ENSACLG00000017428	a1cf	100	86.733	ENSCVAG00000010520	a1cf	100	87.231	Cyprinodon_variegatus
ENSACLG00000017428	a1cf	100	82.245	ENSDARG00000002968	a1cf	100	81.072	Danio_rerio
ENSACLG00000017428	a1cf	100	74.510	ENSDNOG00000002829	A1CF	100	72.386	Dasypus_novemcinctus
ENSACLG00000017428	a1cf	81	85.145	ENSETEG00000012527	A1CF	81	85.145	Echinops_telfairi
ENSACLG00000017428	a1cf	100	75.244	ENSEASG00005012924	A1CF	100	73.290	Equus_asinus_asinus
ENSACLG00000017428	a1cf	100	74.919	ENSECAG00000010424	A1CF	100	72.964	Equus_caballus
ENSACLG00000017428	a1cf	80	68.365	ENSEEUG00000000013	A1CF	97	66.594	Erinaceus_europaeus
ENSACLG00000017428	a1cf	100	82.030	ENSELUG00000003159	a1cf	100	81.198	Esox_lucius
ENSACLG00000017428	a1cf	100	75.707	ENSFCAG00000011179	A1CF	100	74.210	Felis_catus
ENSACLG00000017428	a1cf	100	77.592	ENSFALG00000013183	A1CF	100	75.920	Ficedula_albicollis
ENSACLG00000017428	a1cf	100	74.669	ENSFDAG00000019371	A1CF	100	73.179	Fukomys_damarensis
ENSACLG00000017428	a1cf	100	81.095	ENSFHEG00000019652	a1cf	96	92.188	Fundulus_heteroclitus
ENSACLG00000017428	a1cf	100	77.076	ENSGMOG00000018943	a1cf	100	75.415	Gadus_morhua
ENSACLG00000017428	a1cf	95	75.559	ENSGALG00000003765	A1CF	96	74.520	Gallus_gallus
ENSACLG00000017428	a1cf	100	78.913	ENSGAFG00000014868	a1cf	100	77.595	Gambusia_affinis
ENSACLG00000017428	a1cf	100	83.089	ENSGACG00000010241	a1cf	100	82.927	Gasterosteus_aculeatus
ENSACLG00000017428	a1cf	96	74.871	ENSGAGG00000016508	A1CF	98	72.806	Gopherus_agassizii
ENSACLG00000017428	a1cf	100	75.123	ENSGGOG00000009670	A1CF	100	72.995	Gorilla_gorilla
ENSACLG00000017428	a1cf	100	96.358	ENSHBUG00000021959	a1cf	100	96.358	Haplochromis_burtoni
ENSACLG00000017428	a1cf	100	73.693	ENSHGLG00000008955	A1CF	100	72.386	Heterocephalus_glaber_female
ENSACLG00000017428	a1cf	100	73.039	ENSHGLG00100000518	A1CF	100	71.732	Heterocephalus_glaber_male
ENSACLG00000017428	a1cf	100	74.757	ENSHCOG00000017669	a1cf	100	75.566	Hippocampus_comes
ENSACLG00000017428	a1cf	92	83.607	ENSIPUG00000010367	a1cf	96	82.815	Ictalurus_punctatus
ENSACLG00000017428	a1cf	100	84.466	ENSKMAG00000006568	a1cf	100	82.686	Kryptolebias_marmoratus
ENSACLG00000017428	a1cf	99	86.111	ENSLBEG00000020994	a1cf	99	84.967	Labrus_bergylta
ENSACLG00000017428	a1cf	100	79.698	ENSLACG00000008061	A1CF	100	77.517	Latimeria_chalumnae
ENSACLG00000017428	a1cf	100	80.331	ENSLOCG00000006302	a1cf	100	78.347	Lepisosteus_oculatus
ENSACLG00000017428	a1cf	100	74.510	ENSLAFG00000015462	A1CF	100	74.346	Loxodonta_africana
ENSACLG00000017428	a1cf	100	76.373	ENSMFAG00000035948	A1CF	100	74.875	Macaca_fascicularis
ENSACLG00000017428	a1cf	100	76.373	ENSMMUG00000007077	A1CF	100	74.875	Macaca_mulatta
ENSACLG00000017428	a1cf	100	76.206	ENSMNEG00000031454	A1CF	100	74.709	Macaca_nemestrina
ENSACLG00000017428	a1cf	100	75.205	ENSMLEG00000037223	A1CF	100	73.727	Mandrillus_leucophaeus
ENSACLG00000017428	a1cf	100	87.336	ENSMAMG00000010402	a1cf	100	85.362	Mastacembelus_armatus
ENSACLG00000017428	a1cf	100	93.046	ENSMZEG00005013245	a1cf	100	92.715	Maylandia_zebra
ENSACLG00000017428	a1cf	100	75.618	ENSMGAG00000001507	A1CF	100	74.135	Meleagris_gallopavo
ENSACLG00000017428	a1cf	100	73.366	ENSMAUG00000007422	A1cf	100	71.895	Mesocricetus_auratus
ENSACLG00000017428	a1cf	100	74.629	ENSMICG00000003377	A1CF	100	74.629	Microcebus_murinus
ENSACLG00000017428	a1cf	100	74.346	ENSMOCG00000021536	A1cf	100	72.712	Microtus_ochrogaster
ENSACLG00000017428	a1cf	100	79.762	ENSMMOG00000009422	a1cf	100	79.252	Mola_mola
ENSACLG00000017428	a1cf	91	79.291	ENSMODG00000016478	A1CF	97	77.612	Monodelphis_domestica
ENSACLG00000017428	a1cf	100	83.248	ENSMALG00000012992	a1cf	100	83.077	Monopterus_albus
ENSACLG00000017428	a1cf	100	74.834	MGP_CAROLIEiJ_G0022873	A1cf	100	73.344	Mus_caroli
ENSACLG00000017428	a1cf	100	74.834	ENSMUSG00000052595	A1cf	99	81.558	Mus_musculus
ENSACLG00000017428	a1cf	100	75.000	MGP_PahariEiJ_G0014366	A1cf	100	72.351	Mus_pahari
ENSACLG00000017428	a1cf	100	75.083	MGP_SPRETEiJ_G0023792	A1cf	100	73.422	Mus_spretus
ENSACLG00000017428	a1cf	100	68.966	ENSMPUG00000016971	A1CF	100	67.323	Mustela_putorius_furo
ENSACLG00000017428	a1cf	100	74.837	ENSMLUG00000016071	A1CF	100	73.529	Myotis_lucifugus
ENSACLG00000017428	a1cf	100	74.346	ENSNGAG00000015136	A1cf	100	72.549	Nannospalax_galili
ENSACLG00000017428	a1cf	100	96.026	ENSNBRG00000001712	a1cf	100	96.026	Neolamprologus_brichardi
ENSACLG00000017428	a1cf	100	75.163	ENSNLEG00000012028	A1CF	100	73.366	Nomascus_leucogenys
ENSACLG00000017428	a1cf	94	76.325	ENSMEUG00000015909	A1CF	100	74.513	Notamacropus_eugenii
ENSACLG00000017428	a1cf	91	68.333	ENSOPRG00000010667	A1CF	97	66.239	Ochotona_princeps
ENSACLG00000017428	a1cf	100	95.530	ENSONIG00000019105	a1cf	100	95.530	Oreochromis_niloticus
ENSACLG00000017428	a1cf	81	77.215	ENSOANG00000007360	A1CF	99	75.949	Ornithorhynchus_anatinus
ENSACLG00000017428	a1cf	100	74.711	ENSOCUG00000011587	A1CF	100	73.388	Oryctolagus_cuniculus
ENSACLG00000017428	a1cf	100	85.762	ENSORLG00000013342	a1cf	100	84.422	Oryzias_latipes
ENSACLG00000017428	a1cf	100	83.850	ENSORLG00020000586	a1cf	100	82.708	Oryzias_latipes_hni
ENSACLG00000017428	a1cf	100	83.850	ENSORLG00015018569	a1cf	100	82.708	Oryzias_latipes_hsok
ENSACLG00000017428	a1cf	100	84.679	ENSOMEG00000013531	a1cf	100	83.361	Oryzias_melastigma
ENSACLG00000017428	a1cf	100	73.399	ENSOGAG00000012884	A1CF	100	73.071	Otolemur_garnettii
ENSACLG00000017428	a1cf	100	74.673	ENSOARG00000013695	A1CF	100	73.366	Ovis_aries
ENSACLG00000017428	a1cf	97	73.986	ENSPPAG00000028115	A1CF	99	77.014	Pan_paniscus
ENSACLG00000017428	a1cf	100	74.713	ENSPPRG00000012180	A1CF	100	73.235	Panthera_pardus
ENSACLG00000017428	a1cf	100	74.713	ENSPTIG00000021223	A1CF	100	73.235	Panthera_tigris_altaica
ENSACLG00000017428	a1cf	100	76.119	ENSPTRG00000002508	A1CF	100	73.964	Pan_troglodytes
ENSACLG00000017428	a1cf	100	76.373	ENSPANG00000021988	A1CF	100	74.875	Papio_anubis
ENSACLG00000017428	a1cf	100	79.276	ENSPKIG00000025176	a1cf	100	78.454	Paramormyrops_kingsleyae
ENSACLG00000017428	a1cf	100	76.421	ENSPSIG00000010318	A1CF	100	74.916	Pelodiscus_sinensis
ENSACLG00000017428	a1cf	98	71.672	ENSPMGG00000013359	a1cf	99	72.959	Periophthalmus_magnuspinnatus
ENSACLG00000017428	a1cf	100	74.837	ENSPEMG00000015021	A1cf	100	72.386	Peromyscus_maniculatus_bairdii
ENSACLG00000017428	a1cf	100	75.292	ENSPCIG00000002175	A1CF	100	74.791	Phascolarctos_cinereus
ENSACLG00000017428	a1cf	100	84.065	ENSPFOG00000007437	-	100	84.878	Poecilia_formosa
ENSACLG00000017428	a1cf	100	84.065	ENSPFOG00000006683	a1cf	100	84.878	Poecilia_formosa
ENSACLG00000017428	a1cf	100	85.338	ENSPLAG00000000026	a1cf	100	86.161	Poecilia_latipinna
ENSACLG00000017428	a1cf	100	85.338	ENSPLAG00000001210	-	100	86.161	Poecilia_latipinna
ENSACLG00000017428	a1cf	100	77.649	ENSPMEG00000000921	a1cf	100	78.311	Poecilia_mexicana
ENSACLG00000017428	a1cf	100	76.634	ENSPMEG00000015529	-	100	77.288	Poecilia_mexicana
ENSACLG00000017428	a1cf	100	84.065	ENSPREG00000016298	a1cf	100	84.553	Poecilia_reticulata
ENSACLG00000017428	a1cf	100	76.159	ENSPPYG00000002819	A1CF	100	74.338	Pongo_abelii
ENSACLG00000017428	a1cf	79	60.417	ENSPCAG00000006463	A1CF	68	72.222	Procavia_capensis
ENSACLG00000017428	a1cf	100	73.573	ENSPCOG00000024172	A1CF	100	73.736	Propithecus_coquereli
ENSACLG00000017428	a1cf	100	95.098	ENSPNYG00000017944	a1cf	100	95.098	Pundamilia_nyererei
ENSACLG00000017428	a1cf	100	82.401	ENSPNAG00000007704	a1cf	100	81.743	Pygocentrus_nattereri
ENSACLG00000017428	a1cf	100	75.662	ENSRNOG00000033195	A1cf	100	74.172	Rattus_norvegicus
ENSACLG00000017428	a1cf	100	70.049	ENSRBIG00000042892	A1CF	100	72.481	Rhinopithecus_bieti
ENSACLG00000017428	a1cf	100	75.369	ENSRROG00000041398	A1CF	100	73.892	Rhinopithecus_roxellana
ENSACLG00000017428	a1cf	100	75.123	ENSSBOG00000021930	A1CF	100	73.443	Saimiri_boliviensis_boliviensis
ENSACLG00000017428	a1cf	100	75.874	ENSSHAG00000005096	A1CF	100	73.710	Sarcophilus_harrisii
ENSACLG00000017428	a1cf	100	82.043	ENSSFOG00015011774	a1cf	100	81.219	Scleropages_formosus
ENSACLG00000017428	a1cf	100	86.297	ENSSMAG00000013271	a1cf	100	85.155	Scophthalmus_maximus
ENSACLG00000017428	a1cf	100	86.579	ENSSDUG00000013930	a1cf	100	86.416	Seriola_dumerili
ENSACLG00000017428	a1cf	100	81.333	ENSSLDG00000004290	a1cf	100	81.833	Seriola_lalandi_dorsalis
ENSACLG00000017428	a1cf	95	68.412	ENSSARG00000005940	A1CF	95	67.714	Sorex_araneus
ENSACLG00000017428	a1cf	97	73.630	ENSSPUG00000006797	A1CF	95	72.174	Sphenodon_punctatus
ENSACLG00000017428	a1cf	100	75.327	ENSSSCG00000010431	A1CF	100	74.183	Sus_scrofa
ENSACLG00000017428	a1cf	100	75.733	ENSTGUG00000005090	A1CF	100	74.267	Taeniopygia_guttata
ENSACLG00000017428	a1cf	100	83.442	ENSTRUG00000001982	a1cf	100	81.656	Takifugu_rubripes
ENSACLG00000017428	a1cf	100	82.820	ENSTNIG00000003580	a1cf	100	81.361	Tetraodon_nigroviridis
ENSACLG00000017428	a1cf	97	70.598	ENSTTRG00000013190	A1CF	95	69.060	Tursiops_truncatus
ENSACLG00000017428	a1cf	100	75.707	ENSUAMG00000020065	A1CF	100	74.210	Ursus_americanus
ENSACLG00000017428	a1cf	100	74.794	ENSUMAG00000011162	A1CF	100	73.147	Ursus_maritimus
ENSACLG00000017428	a1cf	86	74.102	ENSVPAG00000006130	A1CF	86	71.834	Vicugna_pacos
ENSACLG00000017428	a1cf	100	77.000	ENSVVUG00000002504	A1CF	97	77.840	Vulpes_vulpes
ENSACLG00000017428	a1cf	100	70.978	ENSXETG00000006611	a1cf	100	70.315	Xenopus_tropicalis
ENSACLG00000017428	a1cf	100	86.656	ENSXCOG00000003302	a1cf	100	85.997	Xiphophorus_couchianus
ENSACLG00000017428	a1cf	100	85.528	ENSXMAG00000016703	a1cf	100	84.878	Xiphophorus_maculatus