EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000019514 (Gene tree)
Gene ID: 113022858
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 9813 bases
Position: chr5:29089041-29098853
Accession: 113022858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000028755	RRM_1	PF00076.22	3.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000029432	-	2779	-	ENSACLP00000028755	244 (aa)	XP_026024530	UPI0003297CF7

Gene Model

Click here to download ENSACLG00000019514's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000019514's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000019514	-	63	70.625	ENSACLG00000004207	rbm24b	100	60.569
ENSACLG00000019514	-	95	59.184	ENSACLG00000016929	rbm24a	100	60.408

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000019514	-	92	66.810	ENSG00000132819	RBM38	94	87.288	Homo_sapiens
ENSACLG00000019514	-	100	91.393	ENSAPOG00000009939	-	100	91.393	Acanthochromis_polyacanthus
ENSACLG00000019514	-	100	64.567	ENSAPOG00000003301	rbm38	98	64.567	Acanthochromis_polyacanthus
ENSACLG00000019514	-	100	97.541	ENSACIG00000012502	-	100	97.541	Amphilophus_citrinellus
ENSACLG00000019514	-	100	64.143	ENSACIG00000000010	rbm38	98	64.143	Amphilophus_citrinellus
ENSACLG00000019514	-	97	90.295	ENSAOCG00000012559	RBM38	100	90.295	Amphiprion_ocellaris
ENSACLG00000019514	-	100	64.567	ENSAOCG00000013497	-	98	64.567	Amphiprion_ocellaris
ENSACLG00000019514	-	100	90.164	ENSAPEG00000023581	-	100	90.164	Amphiprion_percula
ENSACLG00000019514	-	100	64.567	ENSAPEG00000013137	rbm38	98	64.567	Amphiprion_percula
ENSACLG00000019514	-	100	93.443	ENSATEG00000016710	-	100	93.443	Anabas_testudineus
ENSACLG00000019514	-	100	63.636	ENSATEG00000016366	rbm38	98	63.636	Anabas_testudineus
ENSACLG00000019514	-	95	68.511	ENSACAG00000016238	RBM38	90	67.521	Anolis_carolinensis
ENSACLG00000019514	-	92	67.672	ENSANAG00000031959	RBM38	78	94.681	Aotus_nancymaae
ENSACLG00000019514	-	100	79.098	ENSAMXG00000015601	-	100	79.098	Astyanax_mexicanus
ENSACLG00000019514	-	96	65.812	ENSAMXG00000038120	rbm38	97	65.812	Astyanax_mexicanus
ENSACLG00000019514	-	92	66.234	ENSBTAG00000008105	RBM38	89	66.087	Bos_taurus
ENSACLG00000019514	-	52	63.566	WBGene00006321	sup-12	63	78.947	Caenorhabditis_elegans
ENSACLG00000019514	-	92	67.672	ENSCJAG00000019139	RBM38	78	94.681	Callithrix_jacchus
ENSACLG00000019514	-	92	67.532	ENSCAFG00020021943	RBM38	89	67.532	Canis_lupus_dingo
ENSACLG00000019514	-	92	65.801	ENSCHIG00000002609	RBM38	89	65.652	Capra_hircus
ENSACLG00000019514	-	92	66.379	ENSCPOG00000012781	RBM38	89	66.234	Cavia_porcellus
ENSACLG00000019514	-	92	67.672	ENSCCAG00000036872	RBM38	78	94.681	Cebus_capucinus
ENSACLG00000019514	-	92	66.810	ENSCATG00000032133	RBM38	78	94.681	Cercocebus_atys
ENSACLG00000019514	-	92	65.948	ENSCLAG00000005906	RBM38	92	65.368	Chinchilla_lanigera
ENSACLG00000019514	-	92	66.810	ENSCSAG00000015503	RBM38	89	66.667	Chlorocebus_sabaeus
ENSACLG00000019514	-	95	69.362	ENSCPBG00000024059	RBM38	100	67.949	Chrysemys_picta_bellii
ENSACLG00000019514	-	60	62.179	ENSCING00000025102	-	66	62.179	Ciona_intestinalis
ENSACLG00000019514	-	61	63.057	ENSCSAVG00000001132	-	57	62.987	Ciona_savignyi
ENSACLG00000019514	-	95	51.271	ENSCANG00000030105	-	80	50.000	Colobus_angolensis_palliatus
ENSACLG00000019514	-	92	64.655	ENSCGRG00001012928	Rbm38	89	64.069	Cricetulus_griseus_chok1gshd
ENSACLG00000019514	-	82	59.804	ENSCSEG00000020943	rbm38	63	64.062	Cynoglossus_semilaevis
ENSACLG00000019514	-	100	89.344	ENSCSEG00000004701	-	100	89.344	Cynoglossus_semilaevis
ENSACLG00000019514	-	100	88.115	ENSCVAG00000005472	-	100	88.115	Cyprinodon_variegatus
ENSACLG00000019514	-	99	59.438	ENSCVAG00000015952	rbm38	98	61.811	Cyprinodon_variegatus
ENSACLG00000019514	-	99	71.255	ENSDARG00000058818	rbm38	100	71.255	Danio_rerio
ENSACLG00000019514	-	92	66.376	ENSDNOG00000032004	RBM38	98	65.789	Dasypus_novemcinctus
ENSACLG00000019514	-	92	65.801	ENSECAG00000007700	RBM38	89	65.217	Equus_caballus
ENSACLG00000019514	-	92	64.807	ENSEEUG00000013489	RBM38	89	65.929	Erinaceus_europaeus
ENSACLG00000019514	-	90	63.755	ENSELUG00000000585	-	98	63.319	Esox_lucius
ENSACLG00000019514	-	100	80.723	ENSELUG00000005849	-	100	80.723	Esox_lucius
ENSACLG00000019514	-	92	67.100	ENSFCAG00000042916	RBM38	84	87.500	Felis_catus
ENSACLG00000019514	-	73	74.033	ENSFALG00000010805	RBM38	92	72.626	Ficedula_albicollis
ENSACLG00000019514	-	100	61.417	ENSFHEG00000017748	rbm38	98	61.417	Fundulus_heteroclitus
ENSACLG00000019514	-	100	83.197	ENSFHEG00000006160	-	100	84.677	Fundulus_heteroclitus
ENSACLG00000019514	-	75	87.500	ENSGMOG00000016655	-	98	85.326	Gadus_morhua
ENSACLG00000019514	-	95	65.957	ENSGALG00000026081	RBM38	100	67.094	Gallus_gallus
ENSACLG00000019514	-	95	65.948	ENSGACG00000015224	rbm38	100	65.948	Gasterosteus_aculeatus
ENSACLG00000019514	-	94	84.348	ENSGACG00000009873	-	100	84.348	Gasterosteus_aculeatus
ENSACLG00000019514	-	95	69.787	ENSGAGG00000001187	RBM38	100	67.949	Gopherus_agassizii
ENSACLG00000019514	-	100	100.000	ENSHBUG00000011778	-	100	100.000	Haplochromis_burtoni
ENSACLG00000019514	-	100	64.143	ENSHBUG00000012058	rbm38	98	64.143	Haplochromis_burtoni
ENSACLG00000019514	-	92	63.203	ENSHGLG00000015077	RBM38	89	65.368	Heterocephalus_glaber_female
ENSACLG00000019514	-	84	91.262	ENSHCOG00000005622	-	59	91.262	Hippocampus_comes
ENSACLG00000019514	-	80	56.122	ENSHCOG00000019040	rbm38	78	56.122	Hippocampus_comes
ENSACLG00000019514	-	100	72.245	ENSIPUG00000019349	-	100	72.245	Ictalurus_punctatus
ENSACLG00000019514	-	92	59.657	ENSKMAG00000012402	rbm38	98	59.657	Kryptolebias_marmoratus
ENSACLG00000019514	-	100	63.889	ENSLBEG00000018878	rbm38	98	63.889	Labrus_bergylta
ENSACLG00000019514	-	100	89.919	ENSLBEG00000016163	RBM38	100	89.919	Labrus_bergylta
ENSACLG00000019514	-	100	74.590	ENSLOCG00000003456	rbm38	100	74.590	Lepisosteus_oculatus
ENSACLG00000019514	-	92	66.810	ENSMFAG00000043808	RBM38	78	94.681	Macaca_fascicularis
ENSACLG00000019514	-	92	66.810	ENSMMUG00000031391	RBM38	78	94.681	Macaca_mulatta
ENSACLG00000019514	-	92	66.810	ENSMNEG00000034683	RBM38	78	94.681	Macaca_nemestrina
ENSACLG00000019514	-	100	66.135	ENSMAMG00000024135	rbm38	98	64.940	Mastacembelus_armatus
ENSACLG00000019514	-	100	90.574	ENSMAMG00000020499	RBM38	100	90.574	Mastacembelus_armatus
ENSACLG00000019514	-	100	100.000	ENSMZEG00005000849	-	100	100.000	Maylandia_zebra
ENSACLG00000019514	-	100	64.143	ENSMZEG00005026036	rbm38	98	64.143	Maylandia_zebra
ENSACLG00000019514	-	92	66.379	ENSMAUG00000021211	Rbm38	89	65.368	Mesocricetus_auratus
ENSACLG00000019514	-	92	67.811	ENSMICG00000038011	RBM38	98	67.241	Microcebus_murinus
ENSACLG00000019514	-	97	63.934	ENSMOCG00000008715	Rbm38	94	62.963	Microtus_ochrogaster
ENSACLG00000019514	-	100	92.213	ENSMMOG00000020051	-	100	92.213	Mola_mola
ENSACLG00000019514	-	95	65.957	ENSMODG00000016458	RBM38	92	65.823	Monodelphis_domestica
ENSACLG00000019514	-	77	96.296	ENSMALG00000004680	RBM38	72	96.296	Monopterus_albus
ENSACLG00000019514	-	69	71.176	ENSMALG00000022327	rbm38	98	56.800	Monopterus_albus
ENSACLG00000019514	-	97	61.317	MGP_CAROLIEiJ_G0024745	Rbm38	94	63.786	Mus_caroli
ENSACLG00000019514	-	97	61.317	ENSMUSG00000027510	Rbm38	94	63.786	Mus_musculus
ENSACLG00000019514	-	92	63.362	MGP_PahariEiJ_G0026186	Rbm38	94	63.374	Mus_pahari
ENSACLG00000019514	-	97	61.317	MGP_SPRETEiJ_G0025665	Rbm38	94	63.786	Mus_spretus
ENSACLG00000019514	-	72	76.374	ENSMPUG00000006518	RBM38	92	75.000	Mustela_putorius_furo
ENSACLG00000019514	-	92	66.667	ENSMLUG00000011140	RBM38	98	65.652	Myotis_lucifugus
ENSACLG00000019514	-	100	99.590	ENSNBRG00000022545	-	100	99.590	Neolamprologus_brichardi
ENSACLG00000019514	-	100	64.542	ENSNBRG00000022685	rbm38	98	64.542	Neolamprologus_brichardi
ENSACLG00000019514	-	92	65.948	ENSODEG00000007980	RBM38	89	65.801	Octodon_degus
ENSACLG00000019514	-	99	99.588	ENSONIG00000020324	-	100	99.588	Oreochromis_niloticus
ENSACLG00000019514	-	99	64.400	ENSONIG00000017073	rbm38	100	64.400	Oreochromis_niloticus
ENSACLG00000019514	-	95	66.383	ENSOANG00000009259	RBM38	83	65.385	Ornithorhynchus_anatinus
ENSACLG00000019514	-	100	57.540	ENSORLG00000012154	rbm38	98	59.216	Oryzias_latipes
ENSACLG00000019514	-	100	89.024	ENSORLG00000027180	-	100	90.244	Oryzias_latipes
ENSACLG00000019514	-	100	89.024	ENSORLG00020020751	-	100	90.244	Oryzias_latipes_hni
ENSACLG00000019514	-	100	59.216	ENSORLG00020017871	rbm38	98	59.216	Oryzias_latipes_hni
ENSACLG00000019514	-	100	90.204	ENSORLG00015017040	-	100	91.020	Oryzias_latipes_hsok
ENSACLG00000019514	-	100	59.216	ENSORLG00015012606	rbm38	98	59.216	Oryzias_latipes_hsok
ENSACLG00000019514	-	99	60.870	ENSOMEG00000006805	rbm38	98	60.870	Oryzias_melastigma
ENSACLG00000019514	-	100	90.574	ENSOMEG00000023912	-	100	90.574	Oryzias_melastigma
ENSACLG00000019514	-	92	67.241	ENSOGAG00000029136	RBM38	88	67.100	Otolemur_garnettii
ENSACLG00000019514	-	92	67.100	ENSPPRG00000009507	RBM38	84	87.500	Panthera_pardus
ENSACLG00000019514	-	73	75.676	ENSPTRG00000013661	RBM38	78	94.681	Pan_troglodytes
ENSACLG00000019514	-	52	85.714	ENSPTRG00000045845	-	68	85.714	Pan_troglodytes
ENSACLG00000019514	-	92	54.545	ENSPANG00000033127	-	91	53.913	Papio_anubis
ENSACLG00000019514	-	92	66.810	ENSPANG00000020919	-	78	94.681	Papio_anubis
ENSACLG00000019514	-	100	73.279	ENSPKIG00000018122	-	95	91.892	Paramormyrops_kingsleyae
ENSACLG00000019514	-	100	69.478	ENSPKIG00000025417	rbm38	100	71.200	Paramormyrops_kingsleyae
ENSACLG00000019514	-	96	67.364	ENSPSIG00000011649	RBM38	94	65.546	Pelodiscus_sinensis
ENSACLG00000019514	-	99	62.000	ENSPMGG00000011343	rbm38	98	62.000	Periophthalmus_magnuspinnatus
ENSACLG00000019514	-	100	83.468	ENSPMGG00000017094	-	100	85.081	Periophthalmus_magnuspinnatus
ENSACLG00000019514	-	95	65.966	ENSPCIG00000013648	RBM38	92	64.135	Phascolarctos_cinereus
ENSACLG00000019514	-	100	57.480	ENSPFOG00000011658	rbm38	98	60.700	Poecilia_formosa
ENSACLG00000019514	-	100	87.805	ENSPLAG00000002500	-	100	87.805	Poecilia_latipinna
ENSACLG00000019514	-	100	58.039	ENSPLAG00000005218	rbm38	98	60.700	Poecilia_latipinna
ENSACLG00000019514	-	100	57.480	ENSPMEG00000015770	rbm38	98	59.690	Poecilia_mexicana
ENSACLG00000019514	-	100	57.480	ENSPREG00000007398	rbm38	98	60.700	Poecilia_reticulata
ENSACLG00000019514	-	92	66.953	ENSPCOG00000026201	RBM38	77	94.681	Propithecus_coquereli
ENSACLG00000019514	-	70	85.484	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSACLG00000019514	-	100	100.000	ENSPNYG00000019727	-	100	100.000	Pundamilia_nyererei
ENSACLG00000019514	-	100	63.745	ENSPNYG00000021373	rbm38	98	63.745	Pundamilia_nyererei
ENSACLG00000019514	-	86	76.526	ENSPNAG00000010596	rbm38	88	76.526	Pygocentrus_nattereri
ENSACLG00000019514	-	100	77.049	ENSPNAG00000015123	-	98	82.963	Pygocentrus_nattereri
ENSACLG00000019514	-	97	64.344	ENSRNOG00000006420	Rbm38	94	64.198	Rattus_norvegicus
ENSACLG00000019514	-	95	54.468	ENSRROG00000036388	-	89	53.617	Rhinopithecus_roxellana
ENSACLG00000019514	-	92	67.241	ENSSBOG00000031053	RBM38	92	91.000	Saimiri_boliviensis_boliviensis
ENSACLG00000019514	-	100	71.371	ENSSFOG00015004453	rbm38	100	74.089	Scleropages_formosus
ENSACLG00000019514	-	100	91.803	ENSSDUG00000021082	RBM38	100	91.803	Seriola_dumerili
ENSACLG00000019514	-	100	65.490	ENSSDUG00000022611	rbm38	98	65.490	Seriola_dumerili
ENSACLG00000019514	-	100	65.490	ENSSLDG00000010845	rbm38	98	65.490	Seriola_lalandi_dorsalis
ENSACLG00000019514	-	100	92.623	ENSSLDG00000011778	RBM38	100	92.623	Seriola_lalandi_dorsalis
ENSACLG00000019514	-	100	63.922	ENSSPAG00000011113	rbm38	98	63.922	Stegastes_partitus
ENSACLG00000019514	-	100	91.803	ENSSPAG00000020989	RBM38	100	91.803	Stegastes_partitus
ENSACLG00000019514	-	92	66.234	ENSSSCG00000007504	RBM38	89	66.087	Sus_scrofa
ENSACLG00000019514	-	100	88.163	ENSTRUG00000019869	-	100	88.163	Takifugu_rubripes
ENSACLG00000019514	-	96	63.750	ENSTRUG00000024954	rbm38	94	65.833	Takifugu_rubripes
ENSACLG00000019514	-	95	87.013	ENSTNIG00000007093	-	100	87.013	Tetraodon_nigroviridis
ENSACLG00000019514	-	92	67.672	ENSUAMG00000019780	RBM38	89	67.672	Ursus_americanus
ENSACLG00000019514	-	92	67.532	ENSVVUG00000017246	RBM38	89	67.532	Vulpes_vulpes
ENSACLG00000019514	-	95	65.106	ENSXETG00000011268	rbm38	99	64.135	Xenopus_tropicalis
ENSACLG00000019514	-	71	77.528	ENSXCOG00000017324	-	68	83.974	Xiphophorus_couchianus
ENSACLG00000019514	-	100	58.964	ENSXMAG00000023662	rbm38	98	62.205	Xiphophorus_maculatus